LOC110486051 (LOC106584925)


Basic Information

Item Value
gene id LOC110486051
gene name LOC106584925
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25362829 ~ 25376936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557366.2
GACAATACGCCTTTTGCGTGTAGTTCACCATGaaacccaaagaagaagaaaaaggaagTAGGAAGATTTGGAGACTAGTTTGTTTTGGCTATGAACATTCCTTGCGGATTCAAGACTTACTGACTGGACGGAATAGGCCGACTACCCACCTCACTCTGTCGAAAATGTCTAAACTACAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACGGCAGCTGCCCTGGATATTTTCGCGGCAGTTGAGAAAACGGTGGCAGAGTACAAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCGAAGATACAACTAAGTAGAATTGactccctgcagctctctcttgctgtctctgaaGAGGTTCCCTTTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCACGAGACTGGGGCAGGAGGATCCAGAGCCCAcacagattaaagaggaacaggaggaactcTGTACCAGTCAGGAGAAAGAGAAGCTTCAAGGGATGGAGGCTGATATCATAGAGTTCAAATTCACTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACACACTTCAGTCCTTGACTCTTCCCCAAACCCAGACTGTGGAGAACAGAGATAGTGACTCTAAACTAGTGGATCTCAAACCTTTTGGCAATGTGACCCACCTAAATAATCAAAACAATGACTCCAGCCACACCACGTCTATAAAAAATCAACGCTGCCGTGACTGTGGTGAAACATTTGCTCTGAAAGCTGACCTGCAGAGGCATTTGACTCTCACTAAGATGAGACCCAGGGAATGCAGATTCTGCAAAAAACAGTACAACTCCACCTGTAAACTGAAGGCCCATGTTCGACTCTGTCACGTGGATAAACCCTGCTCAATTTGTGGCAAGACCTTCAAATACAAAGGGGCTCTGTCCAGGCACATGAGGACTCatacaggagagacaggagagaaaccatttagtTGTGGTGACTGCGGGAAAAGCTTCAAACGCAAGCAGCATCTAACCAACCATGTACGgactcacacaggggagaaaccattcAGCTGTGGAGACTGTGGTAAAAGCTTCATTCAGAAGGGACATCTAACCGAGCATATTCGAACccatacaggagagaaaccatttagctgtggtgactgtgggaaaaAAAGCTTTAATCAGAAGTGGCTCCTAACCGAACATATACGgactcacacaggggagaaaccatttAACTGTAGTGACTGCGGGAAAAGCTTTAGTTACAAGGGAGACTTAAGGAGGCATATgctgactcacacaggagagaaaccatttagctgtggtgactgCGGAAGATGTTTCAATCATAAGGGGCACCTAAGGAAGCATATATTGACTCACACAGGAGtgaaaccatttagctgtggtgactgCGGGAAAAGCTTCAATCAGAAGGCAGCCCTAAAGACACACATACTGACTCACACAGGAGtgaaaccatttagctgtgggGATTGCGGGAAAAGCTTCTATCAGAAGGGACACCTAAATGAACATATTcggactcacacaggagagaaacaacaTGTCTGCTCAGTATGTGGTAAAGGATTCACGCAGAAGGCTCACCTGGTGAGGCATGTAAACAACGTCCACAAAGAAAGAAAACAGGACGAAAACAGGAAATAAGAAAGAAATTAGGAGAAAGATCTGTCAGATGGTGGGAATAAAAAGGCAGGATGTGGACAGGACAACACTCCTAGGAAAACACAAAGAAAAGCTAAATAAGTGTGGGTCATTCATGCTGTAGGTTTCAGATAAATGGAGGAATGACATTCTGTGGGCCTACAATTGGGGTAAGTGTAGCGACCATAGTGCCACCACTACCAACCTTGTTAGCTGAATGGTTTTGGACCTCTGGTGTAATATTTGAGGGGTTTGACTGATCGTCGCAGGAACTGGGGTTTGAGTCCTGgtattttcttcatttttttttaccatgtcATTCTTAATCCAGCCCTGCCCTAGGTCTTTGGTGGCTCAGATTGCTCACCTTGCTAAAGATATTGTTCTAAACGGTTTGATTTGTCTTCCTAATCATGTTTCTTTAActtttaaatatatattatttataacCACAGTAAGGAAAGGTGATAGATAGCCTATGGATATTTTTGCTCTGAACTTGCCACCCAAAGCAGTTTTAGTCAGGGGCCATATTTAAGTCCTGTTTTAGGCCTCTCAAATATGTACAAATACATCGTACAAGGGAGCATATGTATTCCATTCTCTGTATAGTGAACAGAAGATTGCTGTTCAAGGTCATGTATATTAAAATGTAGAGGAAAATAAAGTGCTTACTAAATGTTTATGGAGTGCTGAACTTGCCGAATAAAGATACCCTGTTAATTCTG
>TU1320313
TATGAACATTCCTTGCGGATTCAAGACTTACTGACTGGACGGAATAGGCCGACTACCCACCTCACTCTGTCGAAAATGTCTAAACTACAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACGGCAGCTGCCCTGGATATTTTCGCGGCAGTTGAGAAAACGGTGGCAGAGTACAAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCGAAGATACAACTAAGTAGAATTGGTTAGTATGTAGCTAGTAGATATCTACCAGGGGATCTAGGGTTATGTACTTATGTAAGGGATAAACGCCCGACAATTTTTCCCAAGCTGGTAATGTACAGAACTCAGGCCTTTATCCCGCTTATATACCACAGTTGCCAAATAAAACAATACTAAAGTCCACTTACC
>TU1320298
CTCACACAGGAGtgaaaccatttagctgtggtgactgCGGGAAAAGCTTCAATCAGAAGGCAGCCCTAAAGACACACATACTGACTCACACAGGAGtgaaaccatttagctgtgggGATTGCGGGAAAAGCTTCTATCAGAAGGGACACCTAAATGAACATATTcggactcacacaggagagaaacaacaTGTCTGCTCAGTATGTGGTAAAGGATTCACGCAGAAGGCTCACCTGGTGAGGCATGTAAACAACGTCCACAAAGAAAGAAAACAGGACGAAAACAGGAAATAAGAAAGAAATTAGGAGAAAGATCTGTCAGATGGTGGGAATAAAAAGGCAGGATGTGGACAGGACAACACTCCTAGGAAAACACAAAGAAAAGCTAAATAAGTGTGGGTCATTCATGCTGTAGGTTTCAGATAAATGGAGGAATGACATTCTGTGGGCCTACAATTGGGGTAAGTGTAGCGACCATAGTGCCACCACTACCAACCTTGTTAGCTGAATGGTTTTGGACCTCTGGTGTAATATTTGAGGGGTTTGACTGATCGTCGCAGGAACTGGGGTTTGAGTCCTGgtattttcttcatttttttttaccatgtcATTCTTAATCCAGCCCTGCCCTAGGTCTTTGGTGGCTCAGATTGCTCACCTTGCTAAAGATATTGTTCTAAACGGTTTGATTTGTCTTCCTAATCATGTTTCTTTAActtttaaatatatattatttataacCACAGTAAGGAAAGGTGATAGATAGCCTATGGATATTTTTGCTCTGAACTTGCCACCCAAAGCAGTTTTAGTCAGGGGCCATATTTAAGTCCTGTTTTAGGCCTCTCAAATATGTACAAATACATCGTACAAGGGAGCATATGTATTCCATTCTCTGTATAGTGAACAGAAGATTGCTGTTCAAGGTCATGTATATTAAAATGTAGAGGAAAATAAAGTGCTTACTAAA
>TU1320299
CTCACACAGGAGtgaaaccatttagctgtggtgactgCGGGAAAAGCTTCAATCAGAAGGCAGCCCTAAAGACACACATACTGACTCACACAGGAGtgaaaccatttagctgtgggGATTGCGGGAAAAGCTTCTATCAGAAGGGACACCTAAATGAACATATTcggactcacacaggagagaaacaacaTGTCTGCTCAGTATGTGGTAAAGGATTCACGCAGAAGGCTCACCTGGTGAGGCATGTAAACAACGTCCACAAAGAAAGAAAACAGGACGAAAACAGGAAATAA
>TU1320300
ATTCTTAATCCAGCCCTGCCCTAGGTCTTTGGTGGCTCAGATTGCTCACCTTGCTAAAGATATTGTTCTAAACGGTTTGATTTGTCTTCCTAATCATGTTTCTTTAActtttaaatatatattatttataacCACAGTAAGGAAAGGTGATAGATAGCCTATGGATATTTTTGCTCTGAACTTGCCACCCAAAGCAGTTTTAGTCAGGGGCCATATTTAAGTCCTGTTTTAGGCCTCTCAAATATGTACAAATACATCGTACAAGGGAGCATATGTATTCCATTCTCTGTATAGTGAACAGAAGATTGCTGTTCAAGGTCATGTATATTAAAATGTAGAGGAAAATAAAGTGCTTACTAAA
>TU1320301
ATTCTTAATCCAGCCCTGCCCTAGGTCTTTGGTGGCTCAGATTGCTCACCTTGCTAAAGATATTGTTCTAAACGGTTTGATTTGTCTTCCTAATCATGTTTCTTTAActtttaaatatatattatttataacCACAGTAAGGAAAGGTGATAGATAGCCTATGGATATTTTTGCTCTGAACTTGCCACCCAAAGCAGTTTTAGTCAGGGGCCATATTTAAGTCCTGTTTTAGGCCTCTCAAATATGTACAAATACATCGTACAAGGGAGCATATGTATTCCATTCTCTGTATAGTGAACAGAAGATTGCTGTTCAAGGTCATGTATATTAAAATGTAGAGGAAAATAAAGTGCTTACTAAATGTTTATGGAGTGCTGAACTTGCCGAATAAAGATACCCTGTTAATTCTGTCCATTTTAGGGAGCCTAAAACATGATATACTCTAAAGCATTTGTCTAATTCAATTTGTGCAATCAAAACTGTTTTTACTATTATCCATGAGTGCTTTAGCTATGCAAAGGTATTCCTGTGATGAACATTACAGCAACAATTTGATATAGACTTAATTGTATCTGATTTCAAAGGCAGAAGCAAACCAAAAAAGCAAGGGTAAATGGGAATGTGTGAAAACAGGGTGAGAGTTGTGCTACTTTCAAAAACACAAATGCTGTTTATTACGTGCCACATCGGGCTTGTTGTTTGGGGGCTTACGGTAATTCTGTAAAATTACCTGTGAGACaatgtcttttaaaaaaaaaaaaatgcctgcCATGTAGCCTGCCAGTAATTGCATTGAATCAAATTAATCAGATGCATGATTAGTTAAGTCCGGGGTTCAAAATAGTTAAAAAATAATGACTCGATGTACCTaatgttgaagtcggaagtttacatacttaggttggagtcattaaaactcattattcaaccactccacaaccaaactatatttttggcaagtcggttaggacatctactttttccaacaattgtttacagacagattatttcacttataattcactgtatcacaattccactgggtcagaagtttacatacactaagttgactgtacatttaaacagcttggaaaattccataaaatgatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggaagtatttcgaggcctaccttcaaactcagtgcttctttgcttgacctcgtgggaaaatcaaaaaaaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557366.2 False 2383 mRNA 0.44 2 25362829 25376101
TU1320313 False 408 lncRNA 0.44 1 25362918 25363325
TU1320298 False 969 lncRNA 0.41 1 25375084 25376052
TU1320299 False 293 lncRNA 0.45 1 25375084 25375376
TU1320300 False 361 lncRNA 0.35 1 25375692 25376052
TU1320301 True 1245 lncRNA 0.36 1 25375692 25376936

Neighbor

gene id symbol gene type direction distance location
LOC110486047 tmem63b coding upstream 43618 25220536 ~ 25319211 (+)
LOC110486045 s5a2 coding upstream 174445 25168165 ~ 25188384 (+)
LOC110486044 LOC106586224 coding upstream 218866 25141199 ~ 25143963 (+)
LOC118938245 NA coding upstream 258099 25093545 ~ 25104730 (+)
ifm3 ifm3 coding upstream 260177 25101524 ~ 25102652 (+)
LOC118938060 NA coding downstream 14395 25390496 ~ 25392938 (+)
LOC110486052 LOC106584902 coding downstream 20030 25396131 ~ 25404252 (+)
LOC110486053 polr3f coding downstream 34768 25410869 ~ 25419361 (+)
LOC110486054 LOC106564778 coding downstream 65014 25441115 ~ 25455367 (+)
LOC110486056 LOC106584953 coding downstream 123699 25499800 ~ 25607402 (+)
G1157746 NA non-coding upstream 7296 25355307 ~ 25355533 (+)
G1157667 NA non-coding upstream 39998 25322227 ~ 25322831 (+)
G1157653 NA non-coding upstream 156126 25206463 ~ 25206703 (+)
G1157643 NA non-coding upstream 166183 25196345 ~ 25196646 (+)
G1157744 NA non-coding downstream 1028 25377129 ~ 25377837 (+)
G1157758 NA non-coding downstream 3672 25379773 ~ 25380095 (+)
G1157759 NA non-coding downstream 7950 25384051 ~ 25384366 (+)
G1157761 NA non-coding downstream 9487 25385588 ~ 25386367 (+)
G1157292 NA other upstream 257691 25082584 ~ 25105138 (+)
G1157117 NA other upstream 598483 24764102 ~ 24764346 (+)
G1156247 NA other upstream 1033866 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1358861 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1763826 23595876 ~ 23608606 (+)
G1157952 LOC106584892 other downstream 86826 25462927 ~ 25463458 (+)
G1157972 NA other downstream 97021 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 480531 25813029 ~ 25872772 (+)
G1158563 NA other downstream 734395 26110496 ~ 26115864 (+)

Expression


Co-expression Network