LOC110486054 (LOC106564778)


Basic Information

Item Value
gene id LOC110486054
gene name LOC106564778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25441115 ~ 25455367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557370.2
ggaccctgcttagcttcagaagcaagccagcagtgggatgcagggtggtatgctgctggcaaattAAATCAATTGGAGCTGATTTACTGGTGTTTTTAGTATtgtatgtccaacaatgaaaaacaTTTAAATTCGTTAATATAAAAAATtgtaatataaataatataatatacgTCGGGAcgcgggccgccagttggggagcCCTGAGTATGGGCTAGCTAGCAGAAGGCAAGTGATGGAGAGAAGGCCAGCCTCAGTTGGACCGATTGCGTTAGCTACCCATACTGAGCCCATACGTATGTGTATTTATTCATTTTCAGGCGTACAACTTTAAGTCCGTTATATTCTTACAGCGTGGGTTAGCGTTAGCTTGTTCATTCTCGTGATGGATGCGCAAATATCAGGCGGGACCGGTGTTGGTACAACCGCTAACGTTAGATCAAATTTGCCTAGCGTTAGATCAAATTTGCAAGGACCCAGTTCAGGTAACGGGAGAAGGATGACGTCCAAAAAAACGCGTTCAAAAAAGGGGAAAAGAAGAAAGAGACGGAGGAGTAAAAAGACGAAGACCAACAAAACACCACCATATTTACCACCGGAGgCTGAAGAAGGAAACATTGAATATAAGCTGAAGTTGGTGAACCCCACACAATACCGATTTGAACACCTGGCCACCCAGCTAAAATGGCGTCTTCAAGAGGGACGGGGCGAGGCAGTGTATCAGATTGGGGTGGAAGACAATGGTCTGCTTGTCGGACTGTCAGAGGGAGACATGAGAGCCTCGCTGAAGACCCTACGGAGGATGGCAGAGAAGGTTGGTGCTGACATCACACTTCTACGGGAAAGAGAGGTGGATTACGACTCAGACAGAAACTGCCGGAAAATCTCAGAGGTTCTTGTCCGAAAAGTTCCAGACGACCAACAGTTCTTGGACCTGCGTGTGGCGGTACTGGGAAACGTGGACTCAGGGAAGTCCACGCTGTTGGGCGTGCTGACTCAAGGCGAGCTGGACAACGGGCGAGGCCGGGCACGCCTCAACCTCTTCAGACACCTTCATGAGATCCAAACGGGCAGGACATCAAGCATCAGCTTTGAGATTTTGGGCTTCAATAGCAAAGGGGAGGTGGTGAACTACAGTGACTCCCGTACAGCCGAGGAGATTTGCGAGAGCTCTTCTAAGATGATCACCTTCATTGACCTGGCCGGCCACCACAAGTACCTGAAAACCACAATTTTTGGCCTCACCAGCTACTGCCCAGACTTCGCCATGCTGGTGGTCAGCGCCAACACAGGCATAGCTGGCACCACCCGCGAGCACCTGGGCCTGGCCATGGCACTAAAGGTGCCCATCTTTATTGTGGTCAGCAAGGTGGACTTGTGTGCCAAAGGAACAGTGGAGCGCACAGTACGCCAGCTGGAGCATGTCCTCAAGCTGCCCGGCTGTAACAAAGTGCCGATGGTGGTGGCCAGCCCAGACGACGCTGTCACAGCCGCCCAGCAGTTCGCTCAGTCCTCCAGCATCACACCCATCTTCACCCTGTCCAGCGTGTCTGGAGAGAGTCTGGCCCTGCTTAAGGTCTTCTTCAACATCCTGCCTCCTCTCAGCAACAGCAAGGAGCAGGAGGAGCTCATGCAGCAACTCACTGAGTTCCAGGTAGATGAGATCTATACCGTGCCAGATGTGGGGACAGTGGTGGGAGGAACTCTCTACAGTGGGGTGTGTCGCGAGGGGGAGAGGCTGGTGGTTGGCCCTACGGACGAGGGCCGTTTCCTGAGGCTGAAGGTGGGCAGCATCCATAGGAACCGCTCGGCATGCAGGGTGCTGAGAGCCGGCCAAGCCGCCACACTGGCCCTCGGCAACTTTGACCGCTCGCTGCTCCGCAAGGGTATGGTGATGGTCAGCCCGAAGATGAACCCCACCATCTGCTGGCAGTTTGAGGCGGCCATCGTCCTTCTCTTCCACGCCAAAACATTCCGTCGGGGCTTCCAAGTGACTGTGCACGTGGGGAACGTAAGACAGACGGCTACCGTGGAGTGCCTGCATGGAAAAGAGGAGCTGCGCACAGGAGAGAGGGCTGTGGTCTGCTTTCGCTTCATTAAACACCCCGAGTACCTCCGCATGGGCGCCAAGCTGCTCTTCAGGGAGGGCGTGACCAAGGGCATCGGCCATGTCACCAGCCTCCTGCCTGAGTCACATGACCAGAACCAGATCCATGACCAGAaccagagggagatagagaaatagagaggaggagaaaggagggaaggagaggaaattATAAGCTCTCCTGAACATGTATCCCCCTCTCAGAGTAAGTTTGTGTGAACTGCCGGCGCCGGACGTCATCCCAGTAGATTGTTATTGAACCACACACTAGTATTTTAATCCCCATTTGTGTGTATCTAAGTGTGTCTGTACTGTACTTTCCACATCTGCCCTTTGTGCCATGTAGAGATGTGAAGCCCTATTGAAACACTTGATATTTCTCAGTGGTGGATTCTGGAACGAATGCTTTGATGAGTGTGGGTAGAGGCAACGGTCGGTGTCTTAAATCAAAGTCTGGTGACCTCGCCGAAGGCAGGCAAAGCTTTCATCTAATCTGCTGTGGATTGCTTGAAGGAACCATTCCCGTCCCTCTCTTGGTCATTTCATAACAGATGCAATAGATCAAATGCCTGCTCTCCCTGTTTTACTATACTGGACAATGTGGAACGTACTCAGCATACCCATCCGTTGGAGGTTTAAAGGGATAGTTGGCTTTTTAAAAGTATTAGGTCATTGTGGACTTACTTAGGCAggatttcccaaactctgtcctgggcCCCACTCCCCTTGGTGCaagttttggtttttgccctagcaatACAATTAACCAACTCACcttcaagctttgatcatttcaatcagctgtgtagtgttagggcaaaaaaacAAAGCGTGTACCCAGGGgcggccccaggaccgagtttgggaaaccctgacctAAGGCGTTGTCGTTTTTAAGTTTGTTAGCTTGTTATTTACCAACATCCAGAATGGCTAGCATGTAGCAATGCTAGTGTAAACAGGTTGTATCAGTTAGCATTGCTTTCAAAAGCATGAGCAAAGCAGGGGAGTTGACCAGTGGTGGTCCTGTCTGCAAATGAAAGAGCTCTTTTACCATGCTTTTGAATGAAAGTTTCCTTATTATGTGGTTTACTCTGCACTTCATTCGTCTTGGTTAGTATTAATGAAAAGTAGACTACGTGCCGCCCATTTTGGTGGCGCAAGTGGCACTAGCACCAACCGTAAATGCTGCCATGCTAATTTTCCAAATGTCAAATTCAACTAAGTCTGTAGGGCAGCAGTAATGTGTGAGGGTTGACAATGAGCAGAGTCAAGACTCTTGGCGTAGTCAAGAGACTGTTGGATTGCAAACCCGTTCTGAAAGAAATGCAGGGGCAAGTATTTTAAGTGATGTGATGTAGCGACACGGCTTTTTTTTCATGGTAGCGGACACTGCTTTTGTAACCCTGTTATAATGTCAACCCATTGAACCCAATGCTACAGGTTAGCAATGGGTAACCTAAACAGGTTTAAACTATTTATACTGTGTCATAGCTTCAGGCTCATCTGTGTACAAGGGAGCTTTGTGCAGCCAGATACCCATGTGGAGTCTGCATGCTTAATAGGGACTTGTGAAAATCTTGTCAGACAAAATGGACTCCTAAATTACAAATATTTATGGAACTCTTGACTTTATCCCTTATCCTTCACGGGGTTGTGTGCAATTATAACTAAAGCATTGAATGTACTGTACCTGAACTTCTAAATACCATATTGAAGCACTAAAATTGTAGTGGGAGATGTCGATTTTGCACTTTGTATTTTTTTGAAATAGCTTctgcatgtttgtgtgcatgccaGATGTTACCGAATCTAGTCCGGGAGAGCTTTAAGGTGTCCAGTAGTGAAACACGGGATTCAATTTATCATGGTGTTGATGCATATTGAGGTCTTGGTGACCACAGATGTATGCTGTTTATTCAAGTATCAGCTGATCTTTACAGTATCTTCAAATGTTTACTGTCATAGGAAATATACCAATTTAGTACAGAAAGCATGCAGAGCACTTTTCTTTTAGATGATATATTCAAATATTACAGGTATTATTAGCTTCTATTCGGTTGAGACAAGTGGCACGTTTGCAGTATGTGTATGTATTGCATCAAGGTTGTGTAAATATTAAACATGTTTTATCATGACGTCCATAGAAACATCAAAAGACAAA
>XM_036942373.1
tagctgcaGCTTGCTATCAAGTTAatgttagttggctagctagcgatATTATCCAATGCTAGGCTAGCCAGAGCCTAGCTTTTTACAAATTCTGACATTATTTTAGCTAGCTTCTGGCAGATGCTGTCGTCTGAGCTTTTTCCATGgCTGAAGAAGGAAACATTGAATATAAGCTGAAGTTGGTGAACCCCACACAATACCGATTTGAACACCTGGCCACCCAGCTAAAATGGCGTCTTCAAGAGGGACGGGGCGAGGCAGTGTATCAGATTGGGGTGGAAGACAATGGTCTGCTTGTCGGACTGTCAGAGGGAGACATGAGAGCCTCGCTGAAGACCCTACGGAGGATGGCAGAGAAGGTTGGTGCTGACATCACACTTCTACGGGAAAGAGAGGTGGATTACGACTCAGACAGAAACTGCCGGAAAATCTCAGAGGTTCTTGTCCGAAAAGTTCCAGACGACCAACAGTTCTTGGACCTGCGTGTGGCGGTACTGGGAAACGTGGACTCAGGGAAGTCCACGCTGTTGGGCGTGCTGACTCAAGGCGAGCTGGACAACGGGCGAGGCCGGGCACGCCTCAACCTCTTCAGACACCTTCATGAGATCCAAACGGGCAGGACATCAAGCATCAGCTTTGAGATTTTGGGCTTCAATAGCAAAGGGGAGGTGGTGAACTACAGTGACTCCCGTACAGCCGAGGAGATTTGCGAGAGCTCTTCTAAGATGATCACCTTCATTGACCTGGCCGGCCACCACAAGTACCTGAAAACCACAATTTTTGGCCTCACCAGCTACTGCCCAGACTTCGCCATGCTGGTGGTCAGCGCCAACACAGGCATAGCTGGCACCACCCGCGAGCACCTGGGCCTGGCCATGGCACTAAAGGTGCCCATCTTTATTGTGGTCAGCAAGGTGGACTTGTGTGCCAAAGGAACAGTGGAGCGCACAGTACGCCAGCTGGAGCATGTCCTCAAGCTGCCCGGCTGTAACAAAGTGCCGATGGTGGTGGCCAGCCCAGACGACGCTGTCACAGCCGCCCAGCAGTTCGCTCAGTCCTCCAGCATCACACCCATCTTCACCCTGTCCAGCGTGTCTGGAGAGAGTCTGGCCCTGCTTAAGGTCTTCTTCAACATCCTGCCTCCTCTCAGCAACAGCAAGGAGCAGGAGGAGCTCATGCAGCAACTCACTGAGTTCCAGGTAGATGAGATCTATACCGTGCCAGATGTGGGGACAGTGGTGGGAGGAACTCTCTACAGTGGGGTGTGTCGCGAGGGGGAGAGGCTGGTGGTTGGCCCTACGGACGAGGGCCGTTTCCTGAGGCTGAAGGTGGGCAGCATCCATAGGAACCGCTCGGCATGCAGGGTGCTGAGAGCCGGCCAAGCCGCCACACTGGCCCTCGGCAACTTTGACCGCTCGCTGCTCCGCAAGGGTATGGTGATGGTCAGCCCGAAGATGAACCCCACCATCTGCTGGCAGTTTGAGGCGGCCATCGTCCTTCTCTTCCACGCCAAAACATTCCGTCGGGGCTTCCAAGTGACTGTGCACGTGGGGAACGTAAGACAGACGGCTACCGTGGAGTGCCTGCATGGAAAAGAGGAGCTGCGCACAGGAGAGAGGGCTGTGGTCTGCTTTCGCTTCATTAAACACCCCGAGTACCTCCGCATGGGCGCCAAGCTGCTCTTCAGGGAGGGCGTGACCAAGGGCATCGGCCATGTCACCAGCCTCCTGCCTGAGTCACATGACCAGAACCAGATCCATGACCAGAaccagagggagatagagaaatagagaggaggagaaaggagggaaggagaggaaattATAAGCTCTCCTGAACATGTATCCCCCTCTCAGAGTAAGTTTGTGTGAACTGCCGGCGCCGGACGTCATCCCAGTAGATTGTTATTGAACCACACACTAGTATTTTAATCCCCATTTGTGTGTATCTAAGTGTGTCTGTACTGTACTTTCCACATCTGCCCTTTGTGCCATGTAGAGATGTGAAGCCCTATTGAAACACTTGATATTTCTCAGTGGTGGATTCTGGAACGAATGCTTTGATGAGTGTGGGTAGAGGCAACGGTCGGTGTCTTAAATCAAAGTCTGGTGACCTCGCCGAAGGCAGGCAAAGCTTTCATCTAATCTGCTGTGGATTGCTTGAAGGAACCATTCCCGTCCCTCTCTTGGTCATTTCATAACAGATGCAATAGATCAAATGCCTGCTCTCCCTGTTTTACTATACTGGACAATGTGGAACGTACTCAGCATACCCATCCGTTGGAGGTTTAAAGGGATAGTTGGCTTTTTAAAAGTATTAGGTCATTGTGGACTTACTTAGGCAggatttcccaaactctgtcctgggcCCCACTCCCCTTGGTGCaagttttggtttttgccctagcaatACAATTAACCAACTCACcttcaagctttgatcatttcaatcagctgtgtagtgttagggcaaaaaaacAAAGCGTGTACCCAGGGgcggccccaggaccgagtttgggaaaccctgacctAAGGCGTTGTCGTTTTTAAGTTTGTTAGCTTGTTATTTACCAACATCCAGAATGGCTAGCATGTAGCAATGCTAGTGTAAACAGGTTGTATCAGTTAGCATTGCTTTCAAAAGCATGAGCAAAGCAGGGGAGTTGACCAGTGGTGGTCCTGTCTGCAAATGAAAGAGCTCTTTTACCATGCTTTTGAATGAAAGTTTCCTTATTATGTGGTTTACTCTGCACTTCATTCGTCTTGGTTAGTATTAATGAAAAGTAGACTACGTGCCGCCCATTTTGGTGGCGCAAGTGGCACTAGCACCAACCGTAAATGCTGCCATGCTAATTTTCCAAATGTCAAATTCAACTAAGTCTGTAGGGCAGCAGTAATGTGTGAGGGTTGACAATGAGCAGAGTCAAGACTCTTGGCGTAGTCAAGAGACTGTTGGATTGCAAACCCGTTCTGAAAGAAATGCAGGGGCAAGTATTTTAAGTGATGTGATGTAGCGACACGGCTTTTTTTTCATGGTAGCGGACACTGCTTTTGTAACCCTGTTATAATGTCAACCCATTGAACCCAATGCTACAGGTTAGCAATGGGTAACCTAAACAGGTTTAAACTATTTATACTGTGTCATAGCTTCAGGCTCATCTGTGTACAAGGGAGCTTTGTGCAGCCAGATACCCATGTGGAGTCTGCATGCTTAATAGGGACTTGTGAAAATCTTGTCAGACAAAATGGACTCCTAAATTACAAATATTTATGGAACTCTTGACTTTATCCCTTATCCTTCACGGGGTTGTGTGCAATTATAACTAAAGCATTGAATGTACTGTACCTGAACTTCTAAATACCATATTGAAGCACTAAAATTGTAGTGGGAGATGTCGATTTTGCACTTTGTATTTTTTTGAAATAGCTTctgcatgtttgtgtgcatgccaGATGTTACCGAATCTAGTCCGGGAGAGCTTTAAGGTGTCCAGTAGTGAAACACGGGATTCAATTTATCATGGTGTTGATGCATATTGAGGTCTTGGTGACCACAGATGTATGCTGTTTATTCAAGTATCAGCTGATCTTTACAGTATCTTCAAATGTTTACTGTCATAGGAAATATACCAATTTAGTACAGAAAGCATGCAGAGCACTTTTCTTTTAGATGATATATTCAAATATTACAGGTATTATTAGCTTCTATTCGGTTGAGACAAGTGGCACGTTTGCAGTATGTGTATGTATTGCATCAAGGTTGTGTAAATATTAAACATGTTTTATCATGACGTCCATAGAAACATCAAAAGACAAA

Function

NR:

description
GTP-binding protein 2-like

GO: NA

KEGG:

id description
K24888 GTPBP2; GTP-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557370.2 False 4271 mRNA 0.48 12 25441115 25455367
XM_036942373.1 True 3816 mRNA 0.48 12 25441745 25455367

Neighbor

gene id symbol gene type direction distance location
LOC110486053 polr3f coding upstream 21754 25410869 ~ 25419361 (+)
LOC110486052 LOC106584902 coding upstream 36863 25396131 ~ 25404252 (+)
LOC118938060 NA coding upstream 48177 25390496 ~ 25392938 (+)
LOC110486051 LOC106584925 coding upstream 65014 25362829 ~ 25376936 (+)
LOC110486047 tmem63b coding upstream 121904 25220536 ~ 25319211 (+)
LOC110486056 LOC106584953 coding downstream 44433 25499800 ~ 25607402 (+)
LOC118938061 NA coding downstream 356511 25784839 ~ 25866420 (+)
LOC110516919 NA coding downstream 389916 25845283 ~ 25849666 (+)
LOC110516920 LOC106578598 coding downstream 400969 25813029 ~ 25872772 (+)
LOC110487413 NA coding downstream 511240 25966607 ~ 25970529 (+)
G1157941 NA non-coding upstream 2557 25438355 ~ 25438558 (+)
G1157940 NA non-coding upstream 2819 25438052 ~ 25438296 (+)
G1157783 NA non-coding upstream 8858 25431815 ~ 25432257 (+)
G1157788 NA non-coding upstream 11136 25429531 ~ 25429979 (+)
G1157785 NA non-coding upstream 15792 25424989 ~ 25425323 (+)
G1157951 LOC106584892 non-coding downstream 6802 25462169 ~ 25462676 (+)
G1157953 NA non-coding downstream 8094 25463461 ~ 25463682 (+)
G1158071 NA non-coding downstream 177822 25633189 ~ 25649000 (+)
G1158114 NA non-coding downstream 248632 25703999 ~ 25704303 (+)
G1158302 NA non-coding downstream 274569 25729936 ~ 25730186 (+)
G1157292 NA other upstream 335977 25082584 ~ 25105138 (+)
G1157117 NA other upstream 676769 24764102 ~ 24764346 (+)
G1156247 NA other upstream 1112152 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1437147 23998646 ~ 24003968 (+)
G1157952 LOC106584892 other downstream 7560 25462927 ~ 25463458 (+)
G1157972 NA other downstream 17755 25473122 ~ 25473978 (+)
G1158563 NA other downstream 655129 26110496 ~ 26115864 (+)
G1158612 LOC106586052 other downstream 708432 26163799 ~ 26217394 (+)

Expression


Co-expression Network