LOC118938446 (LOC106595012)


Basic Information

Item Value
gene id LOC118938446
gene name LOC106595012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26044982 ~ 26048058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035721.1
tcatagctttagcctggattcacctagtctttctaagtcatggaaggagcagctgttcttaatgttttgtctacccAGTGTaaagcactacagataatcaagtgctatttgcatgtgatgcatttgttCTGTTGTTTACAGGATGATGTGTATCTTATAGAGCGTGGCTTTAAGGGAATAGTATGGTCACAGGTAGATAAAAAAGAATGTGAAAAATTAACAGAGAAAATGTATATCAACACACTACCTATTCATAAAAGTATTTATTAATCATCTACATATTCATATTGAGCTTCTACGTCTGTGTACAGGAACGTATTATTTGGAAGAGAAAATGTATCAGCTTATTGTTAAATAATTATGACGTTCTTTCCAATACAAAAAGTGTAGTaactattgtttccaaactgcgttacccactccagacAGCAGATGGCGACGAGCATCTTTCAGTTGACTCTTCTTTcgtgacgtataatggactggacTGGACACTTCGTCAGGAACAACAAGGCGCCAACTCTTTCAACCAcgtcggtagcttgctagccaacataaaactgaaagattgacgttttagaccatgttaatgtacattatctaatctcagtgttttaaacGATTTTCGGTTGACGTATCAACTGGTTCAATTTGCAAACGTGTTAAAGATTGATActgagcctagcactaggctagacgctaatgctagctagctaacatccctgaccatgagctcactaaACTACTCCTCCCTTGCTAATGAAGAGGGGTTCGGCTGTTTGGAGAAATCATTTTTCAGAattaaaaaggaggaagaggaggctgttatagtgaaagaagagaaagatccgtttagagaggaagaggatgctatCTCAATAAAGGTGAAGAAGGAAGACGTTTTGGCAGTGAaaggaggagacagaatatcagattaacaccagagagacacatgactatcgtggatcctctgggaagcctcaacaacatcctgatgctgacgaggaagagaagagtctctccagatcagaacaccagatggacaacactagcccttcctccctcccggagtccccgTGTCATGCCTCTCCTGttagcaccttactgctgggtatgaagaggttgtctgtgctgctggtggactgcaggaaaacaacggggctgagtggaactgtgggaggaggagaagagaggaaaggatcagatttgactcaaagtaagtgctgtagttcagTTTGAACAAATAAATAGATATATTCattggtatctgttaccaggacaaccagcactGTTCTGTTCGTTTtcaggaagatagactggtgaatatggatgttatgaatatcataacactgaaaaaggattctgccaatgaaaagagagaaagcagtagaccatataaaaccttgatgaaagttagatttagagagaaagtttcaagatgatccattgtaaggtgcttgttttacaTAAATGTTTTCTCaaaacattatggatgttacattgcctgtcccagtcaacccCCCTATCTTTACTAGACTGTAGAACAGGCAAACCAAACTCAAGACACTGTTAATTAATTAACTAATACTGGAGGAAAGCTGTGATCAGGCTGCCTactcaagagaaagcttcaaactgtaaccagtgcctgcaacctggttcaggttatcaatcaacctaccagggtagttacaaacagtacAGAAATTGAATCAACATATtttgatcatatctttactattgctgcagaaatgtgtttgaaAGCAGTATTCAAATTCATCGGATgttgtgatcacaatatagtagtcatatctaggaaaaccaaagttccaaaaggCTAGGCCTAGTGTTctatataagaggtcatacaattgtttgtggtgattcctatgttgttgatgttattaGGTTGTTTTTTTTCACAGTAAATAACTCACgaacactagagaagctttaaccaagtttaataattcccaaaggttctgtacatCTGTAATTCAGACAACCCAACATTTGTTCCATCCAGATATATATCCCACttaagacactcctccttctctccaatccttacatcttatggttccACAGGAAGAGAGTAAAGAGGGTAACAGGATACCAGACCTTTATCTCCCTGATGAGAAtctgtcctgacctcaacccctccttcatctAATCCACAGATGTTCATCTGTCTCCCCTGTTTAACACTTTGCTCTCCTCTcgtccacccaacacattccaaagccatctgTCTTTCTTCagagaaccattaacttctgacatAACACCCAGTCTCTTTCACTTCCTATCACTTCTTTAATGTCTCCATGTTCAAAGTTTAGCCGATTCCAACAATGGAaacaatatttgttggtccgtggtgtgtaatgacgagcaaccagacgctgccctTGACacgtttatgaaattgcttatcccagttactaataagcaagcacccattaagaaaatgactttaaaaactg

Function

NR:

description
PREDICTED: protein Ycf2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035721.1 True 2486 mRNA 0.40 3 26044982 26048058

Neighbor

gene id symbol gene type direction distance location
LOC110487413 NA coding upstream 74453 25966607 ~ 25970529 (+)
LOC110516920 LOC106578598 coding upstream 172210 25813029 ~ 25872772 (+)
LOC110516919 NA coding upstream 195316 25845283 ~ 25849666 (+)
LOC118938061 NA coding upstream 232062 25784839 ~ 25866420 (+)
LOC110486056 LOC106584953 coding upstream 437580 25499800 ~ 25607402 (+)
LOC110487373 LOC106608452 coding downstream 10106 26058164 ~ 26080918 (+)
LOC110487393 NA coding downstream 10648 26058706 ~ 26066334 (+)
LOC110487386 LOC106595012 coding downstream 39873 26087931 ~ 26095676 (+)
LOC110487402 NA coding downstream 93483 26141541 ~ 26155230 (+)
LOC118938455 NA coding downstream 205768 26253826 ~ 26255885 (+)
G1158422 NA non-coding upstream 74028 25848644 ~ 25970954 (+)
G1158491 NA non-coding upstream 94952 25949011 ~ 25950030 (+)
G1158542 NA non-coding downstream 1740 26049798 ~ 26064387 (+)
G1158539 NA non-coding downstream 24203 26072261 ~ 26085129 (+)
G1158562 NA non-coding downstream 80725 26128783 ~ 26139138 (+)
G1157972 NA other upstream 571004 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 581524 25462927 ~ 25463458 (+)
LOC110486053 polr3f other upstream 630001 25410869 ~ 25419361 (+)
G1157292 NA other upstream 939844 25082584 ~ 25105138 (+)
G1158563 NA other downstream 62438 26110496 ~ 26115864 (+)
G1158612 LOC106586052 other downstream 115741 26163799 ~ 26217394 (+)
LOC110487383 LOC106564416 other downstream 1061067 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 1242179 27285432 ~ 27291404 (+)
G1158342 NA other downstream 1445096 27493154 ~ 27768641 (+)

Expression


Co-expression Network