LOC110487414 (samd3)


Basic Information

Item Value
gene id LOC110487414
gene name samd3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26303402 ~ 26314343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035728.1
cccctctctcctagtatttctgtccgccatctttgatccagttcagttctgtgtaggggtacccctctctcctagtatttctgtccgccatctttgatccagttcagttctgtgtaggGGTACCCCTCTCTCCTAGTATTTCTGTCCGCCATCTTTGATCCAGTTCAGTTCTGTGTGGGGGTACCCCTCTCTCCTAGTATTTCTGTCCGCCATCTTAGATTcagttcagttctgtgtaggGGTACCCCTCTCTCCTAGTATTTCTGTCCGCCATCTATGAtccagttcagttctgtgtaggGGTACCCCTCTCTCCTAGTATTTCTGTCCGCCACCTTTGCTGAAGACAGTCTAACAGTCACTAgtgcagcagcagcctcccccgGTCCTAGTGTCGGTCCGGTAAGAAGATGCGATGTGATGGAACGGTTAACGAAAAAAAGAAATCACAGAAAAAATATATTGACTGGTATTCATTTATTTAGGGGGGGCTAATTAATATTTTAGCACTAGCGTCGTCTCTGATTCCTACCCTTTAACTTTTtgtctgaaaataaaatacaaattttactcaactgcgttacccactccagtcagcagatggcggtgTGGGAATTTAAGGCAATGCTGCTGGTGTGACGtgtaatctagtggacggaacgaTTCtttcagcagcagcaacagttcgtcagacacctcggtagcttgctagacaaaaTAGCCGAACCAATAAAGCGCTTTAGACGCTTTAGTGATTATTAGTTACTGTGTTTTAATCCCACTTCTGCCATCTAGTTAGTTATCCGATTTATTTTAATATTTACAGTGTTGTTATTAGTCAGCTAGcgggctggttaagttagcattagcctagctagctaacatccctgaccatgcggtcactaagctactctcctgCTTTAGAAGAGGAGGATATCACAGTGAAAcaagaagtagagggtgaggctgttactgtgaaagaagaggaagacggcgttcagagtgaaagaggaggaggatgttacaataaaaggagagggggatgcagtttatggagtgaaagaggaggagtgaGAGATGACTGTTACATCGATAAAGGAGGAGGAAACTGGATTTCTGGTCCCCGTTTCCCAAACGCATCTTAAGGCATCCAATGGTTCTAATGATGAATTTAGCCATAAGATGGTTTTGAGAAACCGTTCCCAgattaacactaATCTTCTCAGAAAGGAATCAAGTCCATGGAATGGATATAGACAAAAAGATAAGACCTAGCAGAGGTAGAGAGGCGAGGCAGGGGTGAGGACATCATCCTGCTATTTTGACAGTCCTTGAAGGACAATACAGAAGAGGACTGGAGACCACAGCAGCGATTCTGCTCTTGCCCAACCTCTTCAATGAGGACCCCAGTGGCCTTTATGTCCATGACAAGGTATGCCTATGCACCAATCATCTGTTTCTTCATAAACATAAGTGTGCATGCTTATATAAAACTACGGCTGAACATTTGTTCTGTTCTTTGTTAATTGTATGTGTATTAATCTTTTCTTACTTTTGTTGACAAACATACCTAATTGATTAGGTATGTTTGGAAATAGCATTGTGTGACTGCGATATGAGACTTGTGTGATTGAGTCTTAATCTTCACCGCTCTTCACTCCTTTACTGCACATTGGCGGAAATCCATTTCACCATGAGAGTGAAATCCCACTGGCCTTTGATGGGGAGAACATCCGCGCCCTCGAGGACGTCCCCATGGGACTTGGGGCTCTGCTATGGCTGTATTTTTAATTTTCCCTTAAATTTCCCCAAAATGTCAGAAAAACACTTATGTTGTTAAGTTACTGTGTTCTGGGGAGAAGAGAAGTTGGGGTGAAGTTACCAGGGCCGGTCATAAAGATGGCAAACTTCCTAACATAACTAAGTGGATACGATATACACACTGAAGCTGAAAAATCTGTATTTAGCATCAAGTCTACAATATTGTTAGTTTACCTATGATTCATTTTTAATGTATGTTGTTTTTATCGTACATCATTATTTTAGAATTGTTTTAAATGTCATGAAAAGCAGTTTACAaagtaaatgtattatttattatggtCTGACATGTCTGCAGAAATGTTGCAGTTTTGTTTCGTaaattgttttgtaaatattaATTCACATTTGTGGTGCCATTAAACACA

Function

symbol description
samd3 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035728.1 True 2189 mRNA 0.42 3 26303402 26314343

Neighbor

gene id symbol gene type direction distance location
LOC118938455 NA coding upstream 47517 26253826 ~ 26255885 (+)
LOC110487402 NA coding upstream 148172 26141541 ~ 26155230 (+)
LOC110487386 LOC106595012 coding upstream 207726 26087931 ~ 26095676 (+)
LOC110487373 LOC106608452 coding upstream 222484 26058164 ~ 26080918 (+)
LOC110487393 NA coding upstream 237068 26058706 ~ 26066334 (+)
LOC110487384 NA coding downstream 59477 26373820 ~ 26379952 (+)
LOC110485120 NA coding downstream 117970 26432313 ~ 26449529 (+)
LOC118938436 NA coding downstream 150162 26464505 ~ 26472221 (+)
LOC110487396 NA coding downstream 188676 26503019 ~ 26514208 (+)
LOC118936356 NA coding downstream 215151 26529494 ~ 26535361 (+)
G1158650 NA non-coding upstream 65897 26237066 ~ 26237505 (+)
G1158640 NA non-coding upstream 76077 26221082 ~ 26227325 (+)
G1158562 NA non-coding upstream 164264 26128783 ~ 26139138 (+)
G1158539 NA non-coding upstream 218273 26072261 ~ 26085129 (+)
G1158411 NA non-coding downstream 2104 26316447 ~ 26542441 (+)
G1158714 NA non-coding downstream 73470 26387813 ~ 26389650 (+)
G1158723 NA non-coding downstream 88231 26402574 ~ 26480917 (+)
G1158745 NA non-coding downstream 113659 26428002 ~ 26428622 (+)
G1158612 LOC106586052 other upstream 86008 26163799 ~ 26217394 (+)
G1158563 NA other upstream 187538 26110496 ~ 26115864 (+)
LOC110516920 LOC106578598 other upstream 431999 25813029 ~ 25872772 (+)
G1157972 NA other upstream 829424 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 839944 25462927 ~ 25463458 (+)
LOC110487383 LOC106564416 other downstream 794782 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 975894 27285432 ~ 27291404 (+)
G1158342 NA other downstream 1178811 27493154 ~ 27768641 (+)
LOC110485129 LOC106591690 other downstream 1461776 27768154 ~ 27788573 (+)
G1159435 NA other downstream 1465879 27780222 ~ 27786165 (+)

Expression


Co-expression Network