LOC118936356


Basic Information

Item Value
gene id LOC118936356
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26529494 ~ 26535361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942411.1
aacgcttcttcAACAACTGCAGCCACCTCGGTAGCTCGCCAGACAACAAAGTCGGAACATTCAAGCTCTTTAGACAATTTACTGGTTTATTTGCCACTATGATTTAAAATACTTACGTGTAAACAACTAGCTACCtcatttaatttcatatttacgTTGTAAGTCAATTAGCTGGCTGGTTAAATTAGCACTAgtctagtcgctaatgctaactagctgtTATCCCCGACCATGAGTAcactaagctactctcctcctgataaagaagaggtctgctggacggagaaggAAGCTCTCGTCAAAGAGGAGGCTGTTCCAATACAAGAACAAGTAGAGGGTGGGGCTGTTactgtgaaagaggaggaggaagacgtttCATTGAAGGACGaggaagacgcgttcagagtgaaagaggaggaggattttacagtaaaagaagaggagaaagaggaggatgcaggttttggagagaaggaggtaggTTTTGGAGAGAAGGAGGTTACTGTGACAGAGAAAGAAGATGAAGACGTTTTTTTAATGAAGGATGAAGAGGGGGAGATTACAGTCACATTAGAGGAGGACGAAGAAGAGAAGACTGGAGaactgattaacaccagtaaatacagagagagactggactatcgtggatcctctggggagcgtCAACAACATCATGATGCTGACAAGGCAGAGAATAGTCTCTCCACATCAAaacacctcaagaaacaccagaggagacccacagggaagaaatctcaccgctgctctgactgtgggaagagattcacctcCTCAGCAGGcattaaaattcatcagagaatccacacaggagagaaatcataTAGCTGTGATctatgtgggaagagttttactacatctagccATCTGactgtacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgcgagaagagttttactacatctagccATCTGactgtacaccagagaacacatacaggagagaaatcttatagctgtgctcaatgcgggaagagttttactacatctagtCATCTGGctgtacaccagagaacacacacaggagagaaaccttttaaCTGTAGTCAGTGTGGgaagagatactctgataaaagaAATCTGATTacacatcagaaaatacatggtCAGAACTGAAATGACAAGATGATGCTATAATTTATTGCATCATAATTGTGGGTTCTTAGAActctcatctgtgtgtgttttaacaTATTTAACAGGAGATTTAACACAGTGgatttcaacttttttttttttaatttacaaaAAGTGACAAACAAGACTTGTTACACTTATCGCGTTGGCGACCCACTGGAATCAAGATGTAGCTAGCTGTTTTCTAcaaattgtcctctaaccagtgatgtacacattattcccagattTCGTGTAGTTTTTGAGTTGTTAGTTTTAATAGGATGTgcaacctcatctccctcctctcagcacaattgatttcaacatgatatcgatgagtgatgacaaataagtgttgtgttcctttgtttagcgacccctacatttaaatgcatcaccccaaaatgtagctgactgtcttctgcaggttgtcctctaactagtgaggtaaaatatatctcccatttccatgtgtttttttgttgttgtgttcgTTTCAACAGCATGTAGAACTGATTTCCCCCCTAATCGATATTAGTGATGTATTGCTACTTGTCAAAACAACAGCGTTTTTGGTGCTTGTGCAGTTTATAAGGTCCACAAGTAATATGGTTATTGTGGCAGATGTTTGTGTGAACTGTACATTTTATGTTTAGGTTTTCAAtatattggttattgatttggacacgttaaaactgtgttttgacattggggCAATCCCACCTagcaaaatgtaattgaaaagaaTAATATGTTTCCTCTTGAAGTCAGACATGTCCTTGGTAAGGACAACTTGATTGCTGATTGTCTCAAGGGTTGGCAGTCAAAAAGATTTGTGTTTTGCcacgtttttattttattttaacacgTTTTTCTGTTTTGGAGATGAGTTTTGTTTGGACTCGTTCTAAGGGGACGAGAGTTCTATAAGCTAGTGAGTTGTAGGAAGAcaagagttctagaagctagtgagttttaggaagacgagagttctagaagctagtgagttttaggaagacgagagttctagaagctagtgagttctagaagctagtgagttttaggaaaacgagagtt
>TU1321462
ACATGTCCTTGGTAAGGACAACTTGATTGCTGATTGTCTCAAGGGTTGGCAGTCAAAAAGATTTGTGTTTTGCcacgtttttattttattttaacacgTTTTTCTGTTTTGGAGATGAGTTTTGTTTGGACTCGTTCTAAGGGGACGAGAGTTCTATAAGCTAGTGAGTTGTAGGAAGAcaagagttctagaagctagtgagttttaggaagacgagagttctagaagctttttttcttgtttttaattgttgacagccagtagacacCATGTTTATATTGTAGTTGATTATTAtgtgaaatggaagttgtttGCTTTTGGTAGTAAGCAAACTTGTCCAACAAAATGATaggacataaactcagcaaaaaaagaaacatcctctcactatcaactgcatttattttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942411.1 False 2253 mRNA 0.40 2 26529494 26535020
TU1321462 True 409 lncRNA 0.35 2 26534715 26535361

Neighbor

gene id symbol gene type direction distance location
LOC110487396 NA coding upstream 15286 26503019 ~ 26514208 (+)
LOC118938436 NA coding upstream 57273 26464505 ~ 26472221 (+)
LOC110485120 NA coding upstream 79965 26432313 ~ 26449529 (+)
LOC110487384 NA coding upstream 149542 26373820 ~ 26379952 (+)
LOC110487414 samd3 coding upstream 215151 26303402 ~ 26314343 (+)
LOC110487357 LOC106588926 coding downstream 14399 26549419 ~ 26555992 (+)
LOC110487400 NA coding downstream 140219 26675239 ~ 26690594 (+)
LOC110487360 NA coding downstream 189819 26704020 ~ 26753678 (+)
LOC118938063 NA coding downstream 278546 26813566 ~ 26817535 (+)
LOC118938064 NA coding downstream 313670 26848690 ~ 26872255 (+)
G1158723 NA non-coding upstream 48577 26402574 ~ 26480917 (+)
G1158745 NA non-coding upstream 100872 26428002 ~ 26428622 (+)
G1158714 NA non-coding upstream 139844 26387813 ~ 26389650 (+)
G1158824 NA non-coding downstream 34676 26569696 ~ 26570103 (+)
G1158896 NA non-coding downstream 131326 26666346 ~ 26666840 (+)
G1158909 NA non-coding downstream 159224 26694244 ~ 26695407 (+)
G1158612 LOC106586052 other upstream 312100 26163799 ~ 26217394 (+)
G1158563 NA other upstream 413630 26110496 ~ 26115864 (+)
LOC110516920 LOC106578598 other upstream 658091 25813029 ~ 25872772 (+)
G1157972 NA other upstream 1055516 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 1066036 25462927 ~ 25463458 (+)
LOC110487383 LOC106564416 other downstream 574105 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 755217 27285432 ~ 27291404 (+)
G1158342 NA other downstream 958134 27493154 ~ 27768641 (+)
LOC110485129 LOC106591690 other downstream 1241099 27768154 ~ 27788573 (+)
G1159435 NA other downstream 1245202 27780222 ~ 27786165 (+)

Expression


Co-expression Network