LOC110487383 (LOC106564416)


Basic Information

Item Value
gene id LOC110487383
gene name LOC106564416
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26977083 ~ 27174368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559314.2
gatggcgatgtgcgtCTTTTAGGTTCAGGCGACGCTGCCAGTGTGACGTATGATCTAATGGACGGGACATTccttcaacaacaacagctagtcAGACACCTCGGTAGCGTTCTAGCAAACATAGCTAACACATTCACGCTCTTTACACTGTTTTGTTATATATTAGTCCTTGTGTATTAATCACACTTCTGTTGTATGTACTTGTTGGTTCATTTAATTATATATTTACGTTGTTTGTCAGCTAGCTGGTTTGCTAAGTTAGCTTAGAACTAGGCTATTCGCTAAtgctaacatccccgaccatgagttcactaagctactctcctcctgataaagaagaggtctgctggacggagaaagaaacCCTCGTCAAAGAGGAGGACGAAGAAGAGgctgttacaatacaaaaacaagtagagggtgaggctgttaccgtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggaagaggatgatacagtaaaagaagagaaagagaaggattccgtttttggagtgaaagaggagggggagatgactgtcacattggaggaagaagaggaggttggAGATCTGTTTAACACCAgagataGAACTGACTACCATGGGTCCTCTGAggagcctcaacaacctcatgatgctgacaaggcagagaagagtctctccacatcagaacacctcaagaaacacgagcagagATCCACAGGGAATAAATCTCACTGCTGCTctgaatgtgggaagagattcacctcCTCAGCAGGcattaaaattcatcagagaatccacacaggagagaaaccttttacctgtactcaatgtgggaagagttttacaaCATCTGGCCatctgactctacaccagagaacacacacaggagagaaaccttatagctgtggtcaatgtgggaaaaGTTTTTCCTCATCTAGCAGTCTCACtcaacaccagagaatacacacaggagagaaaccttatagctgtgggcaatgtgggaagagttttggtcaatctggcgatctgacagtgcaccagagaatacatacaggacagaaaccttatagctgtgatcaatgtgccAAGAGTTTTGTTGGATCTGGTCTGCTGAcattacaccagagaacacacacaggagagaaaccttatagctgtaatcaatgtgagAAGAGTTTTAATACATCTGGCCATCTTGTTGTACACCAAAGaacacacacgggagagaaaccttacagctgtgatcaatgtgggaagagttttactcagctaaGCAACCTGatttcacaccagagaacacacacgggagataaatcttatagctgtgatcaatgtgggaagagttttactcagccaAGCAACCTGACacgacaccagagaacacacacgggagagaaaccgtataactgtgatcaatgtgggaagtttttttttacatctagCCATCTGaagatacaccagagaacacacacaggagagaaaccgtatagctgtgatcaatgtgggaagagttttgttactTCTGGCCAGCTGActttacaccagagaacacacacgggagagaaaccttatagctgtgatcaatgtgggaagagttttactacatctagcaatctgactatacaccagagaacacacacaggagttaAAGGTTATAGCTGTGACCAGAGATAATCTGATTAAAGATCTCTAATCAAATATtagaaaatacatacatgaaggagttgtttcatgatTTCAATGAATTAATGTCACAATTTAGAAagttttttacattgtagaaggagttttttaatgatgtcacaatgtagaacccTAAACGTTTGCCccctgttctattgatttcagcatgatatggatattagcccCAGGGGAAAATTCTaggctctgaattgaaagagTTCTATTTATATGATTTAACAAAAATTgactaacaaaaaaaaaactgtgttACTCACCACGTTGGTGACCCACTggaatcaaaatgcaacacttcaaaatgtagctagATGTTTTTTAcaaattgtcctctaaccagtgatgtacacatttttcccagattccgtgtggtttttgagctgttagttttaacaggacgtgcaacctcatctctctcctctcgcacaattgatttcaacatgatatcGATGAGTTATGACAAATAAGTGTTGTGTTCCTTTGTTTAGCGACCCCTACATTTAAATGCATCactccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtaaaatatatctcccaattccatgttttttttgttgtgttagtttcaacagtaCGTACAACCTGATTTAATAAATACAAGAAATATGATTATTGTGGCAGATGTTTGTGTAAATCGCACATGTTATGTTTAGGTTTTCAATTTATCCcaaactgtttctgcatattggttattgatttggacatGTTAAAACTGTGTTTTGACAGTGGCCTATCCCATCTAGCAAAATGTCGTTGAAAATATGACTATGCAACCAAATAGTTCATATTTACATTTCGTGTAACATTTAGTAGTGATATTTATTCATGCAACCAACTGACAGTTTTTTGGGTACAATTATATTGACATTGTTACCCTGCTTTTAGAATATCAGGGTTATTTCTCAGATGTGCCAACCCAAATGTACTAGAGCATGACATTGGGGACCTTGCCCCGATCCAACAACATGCCTATCGAGTGAACCCTGAAAAAAGAGAGAAGCTCCGCAGTGAGGTGGAAAGTTACTACGGATAATGCAGGAGTTTCCTCTTGAAATCAGACATGTCTGTGGTAAGGACAACTTGGTTTCTGATTGTCTCAAGGGTGGGCAGTCAAAAAGTTTTGTGTTTAGCCAGGGAGTTGCCATGGATTACAATTTATTTTGACTGCACGTTTTTCCGCATTTGGAGATTTATTTTTGTTTGGGCTCGTTCCGAggggacgagagttctagaagctagtgagttttaggaagacgagagttctgGAAGAACtggagtaaaaaaataaaaataagattgtagaaaaatatatatatttagaaatgtgttttttcctgtttttaattgttgacagTCAGTGGACACCATGTTTATATTGGTAAAGCATTTGTAGTTGATTTATAATGTGAAATGcaagttgttttctgttggtggtgagcAAACTTGTCCAACTTAGCTTAGTAtagtttttcttttgtttgcctcttcctgggcagatttagtgggtctcattgtgggtgtcttttaggtcccaaTTGTTGTTACTAGTCAATTTTCAGTGGACACCCtcagtgtctttcagaacccctccaaaaaaacaagcttatattttgggttggaTATTGCATACGATTAATATTTTAATCAATGGAATTTCCTTAGGGTGCTCGTTATTCTTCTGTTGTGTactaaatatgtttttattttcattgtgttGCATTCATGCCTGAAATGTGctatataaataaagcttgatttgattccaacaa
>XM_036942372.1
tctagtggacggttcTTCAGAAACAGCTCGtcaaccacctcggtagcttgctagccaacatagCCGAAAGATCCAAGCTATTTATTCGCTTTCGGTGTATATTAGCTACTGTGTTTTAGACACACTTCTGTCGTAATCTACTTGTTAACCTATTTAATTTAATATTACATTATTTTGTATTAGTCAGCTATAGTAGCTGGCTGGTTAACTTAGCACTAGCCTAattgctaatgctagctagctaacatccccgaacatgagctcactaaactactcgcctcctgttaaagaagagggggtctgctggacggaggaAGAAGCTCTGGGGCTGAACATTGTCCTGAAAGAGGAGAATGTGacagtaaaacaagaagtagaggttgaggctattacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaaaaggaagatgttacagtaaaagaagaggagaaagaggatgcatgttttggagtgaaagatgaggagggggagatgactgtCACATTGAAAGATGAAGTCGAAGAGGAGGAGATAGGATATatgattaacaccagagagagacgggactatcatggatcctctggggagcctcaacaacaacatgatgctgacgaggcagagcagagtctctccacatcagaacacctcaagaaacaccagcagagacccGCTAGGAAGAAATCTAtttgctgctctgactgtgggaaacgTTGCAAATCTTCATCAGATCTTAAAATACATCAAcgagtacacacaggagagaaaccatactgctgctctgactgcggGAAAAGTTTCTCAAGATCAAATTCACTAAAAGTACACCTGagaattcacactggagagaaatcTCACCACTGTTTTGATTGTGGGAAGAGTTACTTAAGATTAAAATCACTAAAAGTACACATGagaattcacactggagagaaaccttacagctgtgatcaatgtgggaagagttttactctaTCTAGTTATCTGattatacaccagagaacacatacaggagagaaaccgtacagctgtactcaatgtgggaagagttttactcagtcaagcAACCTGTTATCacaccagagaaaacacacaggggagaaatcttatagctgtactcaatgtgggaagagttttactcagtcaagcACCCTgttatcacaccagagaacacacacaggagataaaccttattgctgtgatcaatgtgggaagagttttactacatctagccATCGGattgtacaccagagaacacacacaggagagaaaccttatagctgtactcaatgtgggaagtgTTTTACTCACCTATGCAGCCTGTTATCACatcagagaaaacacacaggagagaaatcgtatagctgtactcaatgtgggaagagttttactcagtcaagcAACCTGGTATcccaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttacttcaTCTAGCAGTCTTattgtacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgagaAGAGTTTTGTTACATCTAGCCGTCTTattgtacaccagagaacacacacaggagagaaacctcataGCTGTGCGCAATGTGACAGAagatactctgataaaagatctctgatcaaacatcagaaaatacatacatgaaggagttgtttcatgatattaatgaaataatgtcacaatgtagaaagCTTTAACATTGTAGAAGAATAGTTTTAATTATGTCACAATCTAGATTCCTAATCGTTTGCCCCGTGTTCTATTGATTTCAGCCTGATATGGATATTAGGCTCAGGGGGAAAATCCAGGCTCTGATTTGAAAGAGTACTATTTATGTGATTTAACAAAAAGTGACTGACACAAAAAGAGCTGTGTAACACTTACCATgttggtgacccacttgaatcaaaatgcaacacttcaaaatgtagaGATCTGTTTTCTACAAATTGTACTCTAACCAGGGATGTACACATTACTCCTAGATTCCGTGTGGTTTTTGAGatgttagttttaacaggacgtgcAACCTTATCTCCCAACTCTCACGcaattgatttcaacatgatattGATGAGTGATGAAAAATAAGTGTTGCGTTCCTTTGTTTAGCGACCCCTACATTTAAATGCATCactccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtaaaagatatctcccatttccatgtttttttttagcTGTGTTAGTTTCAACATCACGTACAACCTACTTTCCCCCCTAATCGATTTCAGTGATTTATTGCTACTTGTCAAAACAACAGCGTTTCTGGTGATATGTAAGTAATATGATTGTTGCAGATTTTTGTATTAAGTGAATTATTGCCAATACATATTAATGTACATTTGGTTTTGATATTTCATATTTACAATTCATGTAACATTTAGTAATCTTAACTATCATAATTATTTATGCAACCAGCTGACCATTTTTGGGTACAAATATATTGACATTGTTGCCCTGCTTTTAGAATATCAGGGTTCATTCTCAGATGTGCCAACCCAAATGTACTAGAGCATGACATTGGGGACTGGTCCCCGATCCAACAACATGCCTATCAAGTGgaaccctgaaaagagagagaggctccGCAGTGAGGTGGAAAATTACTACGGATATTGCCGGAGTTTCCTCTTGAAATCAGACATGTTCGTTTTAAGGAAAACTTGCTGATTGTCTCACGGGTGGACACTCAAAATGTTTGTGTTTTGCGTTTAGCCAGTGCGTTACCATGGATCACAGTATATTTTGACTGCACATTTTTCCGTATTGGAGATGAGTGTTGTTtggttctagaagctagtgagttctagaagctagtgggggaaaaacatttttttaattgttgacagccagtCGACATCATGTTCATATTGTCgaaggtgaagcattgtggtTGATTATAATTTCAAAATGAGTTTTAGGATTCTAGAAAGAAAAAGGAGAGAACTAATATGAATGTATATTATTATTTAGATatgttttttcttgttttttagttgttgacagccagtagacacCATGTTTATATTGGTGAAGATGAAGCATTTTAGTTGATATTGATATGAAATGGatgttgttttctgttggtgaTGAGAACCTGCCCAAcaaaaatataggatatatttgttgtcttaagggggaaggtgttacaggctttggtttttccattcatgttttgaggttggactttagctCGTTAGTACTGTGAGGGAATTTTCTGTTAAACCTTACTAATGCTTGTGTAGTAAAATATAATTCTTTAAGCCAAGGCATTGGGCTTGAGATTGGTAAAGAACCTAACTCCTATAACATAGAAAAGTGTGTTGATAGAGGCCTGTtctaactcaaatcaaattgtatttatgtagcccttcttacatagcaaagtgctgtacagaaacccagcctaaaacccgaaacagcaagcaatacaggtgtagaagcacggtagctaggaaaaact
>TU1321068
GTAGAACCCTAAACGTTTGTCCCCTGTTCAATTGATTTcagcatgatatggatattagccttgggaaaaatccagGCTCTGATTTGAAAGAGTACTATTTATGTGATTTAACAAAAAGTGACTGACACAAAAAGAGCTGTGTAACACTTACCATgttggtgacccacttgaatcaaaatgcaacacttcaaaatgtagaGATCTGTTTTCTACAAATTGTACTCTAACCAGGGATGTACACATTACTCCTAGATTCCGTGTGGTTTTTGAGatgttagttttaacaggacgtgcAACCTTATCTCCCAACTCTCACGcaattgatttcaacatgatattGATGAGTGATGAAAAATAAGTGTTGCGTTCCTTTGTTTAGCGACCCCTACATTTAAATGCATCactccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtaaaagatatctcc
>TU1321055
GGTTTGCTAAGTTAGCTTAGAACTAGGCTATTCGCTAAtgctaacatccccgaccatgagttcactaagctactctcctcctgataaagaagaggtctgctggacggagaaagaaacCCTCGTCAAAGAGGAGGACGAAGAAGAGgctgttacaatacaaaaacaagtagagggtgaggctgttaccgtgaaagaagaagagaaagacgtttcagtgaaagaagaggaAGAAGCTCTGGGGCTGAACATTGTCCTGAAAGAGGAGAATGTGacagtaaaacaagaagtagaggttgaggctattacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaaaaggaagatgttacagtaaaagaagaggagaaagaggatgcatgttttggagtgaaagatgaggagggggagatgactgtCACATTGAAAGATGAAGTCGAAGAGGAGGAGATAGGATATatgattaacaccagagagagacgggactatcatggatcctctggggagcctcaacaacaacatgatgctgacgaggcagagcagagtctctccacatcagaacacctcaagaaacaccagcagagacccGCTAGGAA
>TU1321043
TATTTAGATatgttttttcttgttttttagttgttgacagccagtagacacCATGTTTATATTGGTGAAGATGAAGCATTTTAGTTGATATTGATATGAAATGGatgttgttttctgttggtgaTGAGAACCTGCCCAAcaaaaatataggatatatttgttgtcttaagggggaaggtgttacaggctttggtttttccattcatgttttgaggttggactttagctCGTTAGTACTGTGAGGGAATTTTCTGTTAAACCTTACTAATGCTTGTGTAGTAAAATATAATTCTTTAAGCCAAGGCATTGGGCTTGAGATTGGTAAAGAACCTAACTCCTATAACATAGAAAAGTGTGTTGATAGAGGCCTGTTCTGGGTGTGTAGAATGAACCCATGATGTTCGGACACTCAGCCAAGAATATGATAGAAACTGACTGGTTCCTCTTGATCCTCCACAGAGTAAAGGTTATATCCTGCACACCAGTAACAGAGCTATTGTTTTGGAGCCTGTTTTGGGGGAAATATTCTGGTGGAGAAATCAGAATTAACTAAGTAATAAAGTAACATAGATAGTTAAGATGTATTACCTGCAGAATATGCTGATATGAACTATTGACCTCTTGTTATTAGAATGTCTCCTTTCTGACTCTGGTGTTGGCAGCTGCACTTCCCCCCTCAAATGGGCCTCAGTCACTTTGGGTCCAGAGAGGGGAGATGTCAGGCTTATCGATCACATGTCCCTgttgctatgcagaatatcaACATCGATCACATGTCCCTgttgctatGCAGAATATCAGCATCGATCACATGTCCCTGTTGCTAGGCAGAATATGAGCATCGATCACATGTCCCTgttgctatgcagaatatcagcaGATAGTAAGGCAAAGGAGATCTGAAGGAAAGATTGTTTCCATATGTGAACTGTTTTTATTgcaaaccatgtgaagggatggcgtgaGTAATGGGAACCAATCACTTGTCTCCACAGTGTCTGTGCGCCGGTCACTTCCTCCTAGGGGGAGATTGTATTTGGGGCCCAAGGTCTGGCACAGGATGTGTGGGGTTGGTGTTTGGAACCATTGTACGTCATCTCTGAAGTTGCACCTATCCTGAGATACTATATAACCCAGAAGCAAGCCTCCCTGTTATAACAAGTCTTTTAATAAAAGTAAAACCTTGATTGATTATTAATTTAGCCTCTCATTGTTGATTATGGGTAGAATTTCCACCACAGCACGTAGGGCGAACCGATTGGTATCACCTCGTTAGTCAgaatgtgttacacctgtgctggcttgtccgtCTTGTTAGTTGGATGTTGCATCCAATTGTTAATATTGTAATCAATGACATTTCCTTAGGGTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559314.2 False 3529 mRNA 0.39 2 27108878 27122121
XM_036942372.1 False 3581 mRNA 0.39 2 27154872 27172664
TU1321068 False 468 lncRNA 0.38 2 26977083 27171357
TU1321055 False 624 TUCP 0.45 3 27109125 27169794
TU1321043 True 1374 lncRNA 0.41 4 27172168 27174368

Neighbor

gene id symbol gene type direction distance location
trnak-uuu-6 NA coding upstream 61379 27047427 ~ 27047499 (+)
LOC110485124 NA coding upstream 129645 26975950 ~ 26979233 (+)
LOC118938064 NA coding upstream 236623 26848690 ~ 26872255 (+)
LOC118938063 NA coding upstream 291343 26813566 ~ 26817535 (+)
LOC110487360 NA coding upstream 356171 26704020 ~ 26753678 (+)
LOC110487391 NA coding downstream 73012 27245676 ~ 27257780 (+)
LOC110485126 NA coding downstream 112768 27285432 ~ 27291404 (+)
LOC118938439 NA coding downstream 216071 27388735 ~ 27400326 (+)
LOC118938442 NA coding downstream 236864 27409528 ~ 27415373 (+)
LOC110487379 NA coding downstream 243287 27415951 ~ 27424543 (+)
G1159034 NA non-coding upstream 56051 26951028 ~ 27052827 (+)
G1159065 NA non-coding upstream 78036 27025741 ~ 27030842 (+)
G1159045 NA non-coding upstream 86553 26981101 ~ 27022325 (+)
G1159049 NA non-coding upstream 112478 26993058 ~ 26996400 (+)
G1158388 NA non-coding upstream 119278 26988858 ~ 26989600 (+)
LOC118938440 NA non-coding downstream 85911 27258575 ~ 27630770 (+)
G1159181 NA non-coding downstream 90475 27263139 ~ 27264833 (+)
G1159206 NA non-coding downstream 121919 27294583 ~ 27295249 (+)
G1159229 NA non-coding downstream 164951 27337615 ~ 27338168 (+)
G1158612 LOC106586052 other upstream 891484 26163799 ~ 26217394 (+)
G1158563 NA other upstream 993014 26110496 ~ 26115864 (+)
LOC110516920 LOC106578598 other upstream 1237475 25813029 ~ 25872772 (+)
G1157972 NA other upstream 1634900 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 1645420 25462927 ~ 25463458 (+)
G1158342 NA other downstream 320490 27493154 ~ 27768641 (+)
LOC110485129 LOC106591690 other downstream 603455 27768154 ~ 27788573 (+)
G1159435 NA other downstream 607558 27780222 ~ 27786165 (+)
LOC118938246 LOC106595566 other downstream 690844 27863508 ~ 27865760 (+)
LOC110487400 NA coding upstream 286489 26675239 ~ 26690594 (+)
LOC110487357 LOC106588926 coding upstream 421091 26549419 ~ 26555992 (+)
G1159041 NA non-coding upstream 2770 26973986 ~ 26974313 (+)
G1159030 NA non-coding upstream 27197 26942754 ~ 26949886 (+)
G1158998 NA non-coding upstream 58315 26898413 ~ 26918768 (+)
G1158400 NA non-coding upstream 79913 26798887 ~ 26897170 (+)
G1158946 NA non-coding upstream 187125 26789143 ~ 26789958 (+)

Expression


Co-expression Network