LOC118938454


Basic Information

Item Value
gene id LOC118938454
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27156377 ~ 27164349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035733.1
gtaggttacagtaggttgtatctctctaggtaaTGCCAgtagGTTACAGTTGTATCCAAGTGGTTGTATCTCtttaggtcatgccagtaggctacagtaggttgtaactctctaggccatgccagtagactacagtaggtggCCAGGCTAgggtaggttgtatctctctaggtcatgccagtaggttacagtaggttgtatctctctcagtcatgccagtaggttacagtaggttgtatctctctcgGTCATTCCAGGAGGTTACAGTAGGTTTTATCGCTCTAgatcatgccagtaggttacagtaggttg
>XR_005035732.1
CTCTCTAGGTCATGTCAgtagGTTACAGTTGTATCCAAGTGGTTGTATCTCtttaggtcatgccagtaggctacagtaggttgtaactctctaggccatgccagtagactacagtaggtggCCAGGCTAgggtaggttgtatctctctaggtcatgccagtaggttacagtaggttgtatctctctcagtcatgccagtaggttacagtaggttgtatctctctcgGTCATTCCAGGAGGTTACAGTAGGTTTTATCGCTCTAgatcatgccagtaggttacagtaggttg
>TU1323776
ggttgtatctatCTAGGACATGCCAGTAGGCAACAGTAGggagtatctctctaggtcatgccagtaggttacagtaggttgtatctctctaggtcatgccagtaggttacagtaggttgtatctctctaggtcatggcagtaggttacagtaggttgtatctctctaggtcatgccagtaggttacagtaggttgtatttctctaggtcatgccagtaggctacgGT
>TU1323771
ggttgtatctatCTAGGACATGCCAGTAGGCAACAGTAGggagtatctctctaggtcatgccagtaggttacagtagggtgtatctctctaggtcatgccagtaggttacagtaggttgtatctctctaggtcatggcagtaggttacagtaggttgtatctctctagatcatgccagtaggttacagtaggttgtatcgctctaggtcatgccagtaggttacagttgTATCCaataggttgtatctctctaggtcatgccagtaggttacagtaggttgtatcgctctaggtcatgccagtaggttacagttgTATCCaataggttgtatctctctaggtcatgccagtaggttacagtaggttgtatggctctaggtcatgccagtaggttacagttgTATCCAATAGGTTGta
>TU1323768
ggttgtatctatCTAGGACATGCCAGTAGGCAACAGTAGggagtatctctctaggtcatgccagtaggttacagtagggtgtatctctctaggtcatgccagtaggttacagtaggttgtatctctctaggtcatgccagtaggttacagtaggttgtatctctctaggtcatgccagtaggttacagtaggttgtaactctCTTGGTCAtgccagtagactacagtaggtggCCAGGCTAgggtaggttgtatctctctaggtcatgccagtaggttacagtaggttgtatctctctaggtcatgccagtaggctacagtaggttgtaactctctaggtcatgccagtaggttacagtaggttgtatctctctaggtaaTGCCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035733.1 False 312 mRNA 0.46 3 27158015 27163245
XR_005035732.1 False 291 mRNA 0.46 3 27158015 27163612
TU1323776 False 227 lncRNA 0.46 3 27156377 27164349
TU1323771 False 417 lncRNA 0.45 5 27156805 27164349
TU1323768 True 387 lncRNA 0.47 4 27157337 27164349

Neighbor

gene id symbol gene type direction distance location
LOC110485125 LOC106566134 coding downstream 77194 27049776 ~ 27080821 (-)
LOC118938444 LOC106592762 coding downstream 109847 27038373 ~ 27048168 (-)
LOC110487356 NA coding downstream 136489 27016761 ~ 27021526 (-)
LOC118938449 NA coding downstream 165770 26986832 ~ 27059322 (-)
LOC110487389 NA coding downstream 207868 26942765 ~ 26950147 (-)
LOC110487364 LOC106564413 coding upstream 20474 27184086 ~ 27199725 (-)
LOC110487353 LOC106599969 coding upstream 158468 27322080 ~ 27338295 (-)
LOC118938437 LOC106578626 coding upstream 186741 27350353 ~ 27360352 (-)
trnak-uuu-7 NA coding upstream 254719 27418331 ~ 27418403 (-)
LOC118938445 NA coding upstream 266812 27430424 ~ 27434200 (-)
G1160723 NA non-coding downstream 2556 27108941 ~ 27155459 (-)
G1160008 NA non-coding downstream 108303 27049071 ~ 27049712 (-)
G1160004 LOC106591999 non-coding downstream 143340 27007237 ~ 27014675 (-)
G1160756 NA non-coding upstream 23638 27187250 ~ 27248803 (-)
G1160749 NA non-coding upstream 70102 27233714 ~ 27238199 (-)
G1160786 NA non-coding upstream 82844 27246456 ~ 27277317 (-)
G1160062 NA non-coding upstream 96610 27260222 ~ 27260664 (-)
G1160805 NA non-coding upstream 126272 27289884 ~ 27291390 (-)
LOC118938441 NA other downstream 360353 26783371 ~ 26798125 (-)
LOC110487367 NA other downstream 391607 26639356 ~ 26788912 (-)
G1160215 NA other downstream 987345 26164757 ~ 26170670 (-)
G1160103 NA other downstream 1206483 25948090 ~ 25951532 (-)
G1159985 LOC106591017 other upstream 383131 27546743 ~ 27806603 (-)
LOC110487374 LOC106591372 other upstream 411565 27574215 ~ 27597841 (-)
G1160986 NA other upstream 524170 27687782 ~ 27692981 (-)
G1161210 NA other upstream 965477 28129089 ~ 28130337 (-)
G1161370 NA other upstream 1632853 28660567 ~ 28798508 (-)

Expression

LOC118938454 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC118938454 Expression in each Bioproject

Bar chart with 8 bars.
LOC118938454 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network