LOC110485126


Basic Information

Item Value
gene id LOC110485126
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27285432 ~ 27291404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556197.2
AAGGTAGGGGTCTGAATTATTGCCACCCATGTTTTCTTTTCAATAttccagcaccctccccttggGAGGATAACGACActgaaatgttttatgagattagagaacacattgggtgggatcttagaccattccaaCATACAGAATCTCTCCAGGTCCTTGATTTATTTTGTCTGCGCTTGTAGACTGCCctgttcaattcaaaccacaggttttcaatggagtTCAAGTCcgaagactgagatggccattgaaaatgttgattttgtgcccaattaaccatttctttgtggatgttgatgtgtCCTGCTGGAATATCAACttgtggccaagtttcagcctcctagcAGAGAGGGTACCAGGTTTTGGGGTAAAATATCTGGTAGTGGGTAAAATTGATTAATTTATTTCATACAAACAtttctgctcatctttatcaagggtatcAATAACTAGGTGATACTTTTGATATCTAGTTATTTGACTGAATCAGAAATACAGATGTGGAGTAGATGTAGAGTTTGTTTTAAATTCTCAAAAAACATCTGACCTAATCAAACAACACTTGTTGCTCTTTGTACGTGTTGATATAATATTCTTATTTAATGGAGAGGAAAAAACGTTTCCCTAAACTGATTTATAATATTATACTTaaatgaaaaagaaaaaaaagttttccCTCCTCAACTGCGTTTACTCCCCCCAGACAGCAGATGGCGATATGTGTCTTTCAGGCGATGTTTCTAGTGTGACGTTaaatctagtggacggaacgcttcttcAACAACTGCAGCCACCTCGGTTGCTCGCTAGCCAACAAAGTCGGAACATTCAAGTTCTTTAGACCATTTCGTGGTTTAATTGCCACTAGGATTTAAACATACTTATGTGTAAACAACTAGCTACCCCATTTAATTTAATATTTACGTTGTAAGTCAACTAGCTGGCTGGTTAAGTTAGCCCTAgtctagtcgctaatgctaactagctattatccccgaccatgagttcactaaaCTACTCTCCTCCTGCTGAAGAAGAGgtggtctgctggacggagaaagaaactctcgtgaaagaggaggaggaagaggaggctgttacaatacaaaaacaagtagagggtgaggctgttaccgtgaaaaaagaagagaaagacgttacagtgaaagaggaggaggatgttaccgTGAAAGAAAATGAGGATGATGCCGTTTTTGGAGTAGAAGATGAAGAAGTTTTTGGAATAACGGATGAAGAgggggagattactgtcacaCTTGAGGATGACGAAGAAGAGCAGACtggagatctgattaacaccagtaaatacaGATTGAGACGGGACtttcgtggatcctctggggatcctcaacaacatcatgatgctgacgaggcagagaaaagtctctccagatcagaactcctcaagaaacaccagcagagaccTACAGGGAAAAAaactcactgctgctctgactgtgggaaaatATTCAATTCTTCAGTAGACCTTAAAATACATCAAagaattcacactggagagaaaccttttgGCTGTGatcactgtgggaagagttttattcGTCTACAAACCCTGaaatcacaccagagaattcacactggagagaaaccttatggctgtgatcaatgtgggaagagttttactcagctaaATAGCCTGATGGTACACCAGCGGGGACATTCAGGAGAGAAACCGTATAGCTGTAATcgatgtgggaagagtttttctacatctagctatctaactatacaccagagaacacatacaggagagaaaccatatagctgtaatcaatgtgggaagagttttattcGTCTACAAACCCTgaaatcacaccagagaatacacactggagagaaaccttatagctgtgatcaatgtggaaagagttttactcaCCTTAACAGCCTCATAGTACACCagcggacacacacaggagagaaatcttatagctgtgatcaatgtggaaaGAGATTTTCTACATCTAGTTATTTAAAGATACaccaaagaacacacacaggagagaaaccacaTAGCTGTAaccaatgtgggaagagtttcactcAGCTAAACAGCATGATAGTTCACCagcggacacacacaggagagaaagttTTTAaatgtgatcaatgtgggaagagttttggtacATCTGGATGTCTGAagacacaccagagaacacacacaggagagaaaccttataactgtagtcaatgtgggaagagttttggtacATCTGGATGTCTGAcaacacaccagagaacacacacaggagagaaaccttataactgtagtcaatgtgggaagagttttactacatctagccAGCTGACTTTAcacaagagaacacacactggagagaaaccttatagctgtgatcaatgtgggaagagtttttcaCGGCCAGACAGCCTGAATATACACAagcggacacacacaggagagaaaccttatagctgtagtAAATGTGGGAAGGGTTTTACTACATCTTGCCAGCTTACTTTGCACCAGAGAAGACACACAGGACAGAATccttatagctgtactcaatgagGGAAGAGTTTTACTTTGCTTAACAGCCTGGTGTCAccccagagaacacacacaggagagaaatctcttagctgtaatcaatgtgggaagagataatctgataaaagatctctgactaaacatcagaaaatacataaaggagttgtttcatgatatcaat
>TU1321965
gggaagagttttattcGTCTACAAACCCTGaaatcacaccagagaattcacactggagagaaaccttatggctgtgatcaatgtgggaagagttttactcagctaaATAGCCTGATGGTACACCAGCGGGGACATTCAGGAGAGAAACCGTATAGCTGTAATcgatgtgggaagagtttttctacatctagctatctaactatacaccagagaacacatacaggagagaaaccatatagctgtaatcaatgtgggaagagttttattcGTCTACAAACCCTgaaatcacaccagagaatacacactggagagaaaccttatagctgtgatcaatgtggaaagagttttactcaCCTTAACAGCCTCATAGTACACCagcggacacacacaggagagaaatcttatagctgtgatcaatgtggaaaGAGATTTTCTACATCTAGTTATTTAAAGATACaccaaagaacacacacaggagagaaaccacaTAGCTGTAaccaatgtgggaagagtttcactcAGCTAAACAGCATGATAGTTCACCagcggacacacacaggagagaaagttTTTAaatgtgatcaatgtgggaagagttttggtacATCTGGATGTCTGAagacacaccagagaacacacacaggagagaaaccttataactgtagtcaatgtgggaagagttttactacatctagccAGCTGACTTTAcacaagagaacacacactggagagaaaccttatagctgtgatcaatgtgggaagagtttttcaCGGCCAGACAGCCTGAATATACACAagcggacacacacaggagagaaaccttatagctgtagtAAATGTGGGAAGGGTTTTACTACATCTTGCCAGCTTACTTTGCACCAGAGAAGACACACAGGAC

Function

NR:

description
zinc finger protein 2 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556197.2 False 2732 mRNA 0.41 2 27285432 27291404
TU1321965 True 898 TUCP 0.42 2 27290237 27291218

Neighbor

gene id symbol gene type direction distance location
LOC110487391 NA coding upstream 27652 27245676 ~ 27257780 (+)
LOC110487383 LOC106564416 coding upstream 112768 26977083 ~ 27174368 (+)
LOC118938484 NA coding upstream 138887 27143496 ~ 27146545 (+)
trnak-uuu-6 NA coding upstream 237933 27047427 ~ 27047499 (+)
LOC110485124 NA coding upstream 306199 26975950 ~ 26979233 (+)
LOC118938439 NA coding downstream 97331 27388735 ~ 27400326 (+)
LOC118938442 NA coding downstream 118124 27409528 ~ 27415373 (+)
LOC110487379 NA coding downstream 124547 27415951 ~ 27424543 (+)
LOC110487368 LOC106564416 coding downstream 147820 27439224 ~ 27538219 (+)
LOC110487372 NA coding downstream 173223 27464627 ~ 27471634 (+)
G1159181 NA non-coding upstream 20599 27263139 ~ 27264833 (+)
G1159034 NA non-coding upstream 232605 26951028 ~ 27052827 (+)
G1159065 NA non-coding upstream 254590 27025741 ~ 27030842 (+)
G1159045 NA non-coding upstream 263107 26981101 ~ 27022325 (+)
G1159206 NA non-coding downstream 3179 27294583 ~ 27295249 (+)
G1159229 NA non-coding downstream 46211 27337615 ~ 27338168 (+)
LOC118938450 LOC106604339 non-coding downstream 248625 27539872 ~ 27545029 (+)
G1159353 NA non-coding downstream 282040 27573444 ~ 27574687 (+)
G1158612 LOC106586052 other upstream 1068038 26163799 ~ 26217394 (+)
G1158563 NA other upstream 1169568 26110496 ~ 26115864 (+)
LOC110516920 LOC106578598 other upstream 1414029 25813029 ~ 25872772 (+)
G1157972 NA other upstream 1811454 25473122 ~ 25473978 (+)
G1158342 NA other downstream 201750 27493154 ~ 27768641 (+)
LOC110485129 LOC106591690 other downstream 484715 27768154 ~ 27788573 (+)
G1159435 NA other downstream 488818 27780222 ~ 27786165 (+)
LOC118938246 LOC106595566 other downstream 572104 27863508 ~ 27865760 (+)
G1159631 NA other downstream 828261 28119665 ~ 28125638 (+)

Expression


Co-expression Network