LOC118938246 (LOC106595566)


Basic Information

Item Value
gene id LOC118938246
gene name LOC106595566
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27863508 ~ 27865760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035509.1
gtcgcagttgcaaatgagaacttgttctcaactagcctacctggttaaataaaggagagagaccagactctgACAGCGGGAAGAGTTCCTCAGAGGAAACAGACATGGAGACGCCTAACCAACACCACTGCTaccactgtggaaagagttttaagtGGTTAGGGAGCCTGAAAATGCATGAtgcatgagagaacacacacgggagagaagccttatcactgttcccactgtggaaagagttttaggtGGTTATGGGTCCTGAAAAAgcatgagagaaaacacacaggagaaaagcctttccaacatactaatacacaggaggagaagacataccactgctctcatTGTGAAAAgacattttcccagtcagaggacCTGAAATCACACGAGAGAATAGAGAGGCTGAGTTCTGACTTTGTCCATGGCCAGGATTCACAGGGCCAGGGTGTCCGCTATAGGTACCTGGGAAAAAAATCAGCAGCGGACATTTTTGAACATTTATCCAACAGACCTGTACATCCATGAATGGATCTCTATAGTGTGTAACTATTTCTGCTGTATTGTTTAATTGTACAATGTTATTTCAACAGATTTTACTGATGCTATTAGATTTTACATTTATCTGTGGGTTTATTTCAACAGATTTTACTGATGCTATTAGACTGCTGTGTGGGGGGAGTTTTATATATACAgagacttcagaaagtattcacaccccttgacttgtcccacatgttgtgttacatcctgaatgtATAATGGTTCCCCCTTGACTtgtcccacatgttgttgtgttacatcctgaatgtATAAAGGTTCCcacttgacttgt
>TU1321052
ctacaccacccgatgtcacaggaaggccataaagatcatcaaggacatcaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggagagagaccagactctgACAGCGGGAAGAGTTCCTCAGAGGAAACAGACATGGAGACGCCTAACCAACACCACTGCTaccactgtggaaagagttttaagtGGTTAGGGAGCCTGAAAATGCATGAtgcatgagagaacacacacgggagagaagccttatcactgttcccactgtggaaagagttttaggtGGTTATGGGTCCTGAAAAAgcatgagagaaaacacacaggagaaaagcctttccaacatactaatacacaggaggagaagacataccactgctctcatTGTGAAAAgacattttcccagtcagaggacCTGAAATCACACGAGAGAATAGAGAGGCTGAGTTCTGACTTTGTCCATGGCCAGGATTCACAGGGCCAGGGTGTCCGCTATAGGTACCTGGGAAAAAAATCAGCAGCGGACATTTTTGAACATTTATCCAACAGACCTGTACATCCATGAATGGATCTCTATAGTGTGTAACTATTTCTGCTGTATTGTTTAATTGTACAATGTTATTTCAACAGATTTTACTGATGCTATTAGATTTTACATTTATCTGTGGGTTTATTTCAACAGATTTTACTGATGCTATTAGACTGCTGTGTGGGGGGAGTTTTATATATACAgagacttcagaaagtattcacaccccttgacttgtcccacatgttgtgttacatcctgaatgtATAATGGTTCCCCCTTGACTtgtc

Function

NR:

description
PREDICTED: zinc finger protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035509.1 False 832 mRNA 0.42 2 27864840 27865760
TU1321052 True 823 TUCP 0.44 2 27863508 27865707

Neighbor

gene id symbol gene type direction distance location
LOC110485129 LOC106591690 coding upstream 76267 27768154 ~ 27788573 (+)
LOC118938453 NA coding upstream 140423 27722180 ~ 27724417 (+)
LOC118938440 NA coding upstream 234070 27258575 ~ 27630770 (+)
LOC118938450 LOC106604339 coding upstream 320147 27539872 ~ 27545029 (+)
LOC110487369 LOC106595056 coding upstream 366419 27493088 ~ 27498421 (+)
LOC110487376 NA coding downstream 42025 27907785 ~ 27915756 (+)
LOC110485128 LOC106595049 coding downstream 49491 27915251 ~ 27943776 (+)
LOC118938251 NA coding downstream 78696 27944456 ~ 27950411 (+)
LOC110487397 LOC106590567 coding downstream 159217 28024977 ~ 28035081 (+)
LOC118938252 LOC106566134 coding downstream 196006 28061766 ~ 28064668 (+)
G1158375 NA non-coding upstream 12046 27851634 ~ 27852794 (+)
G1158371 NA non-coding upstream 49855 27814382 ~ 27814985 (+)
G1158351 NA non-coding upstream 53806 27810093 ~ 27811034 (+)
G1158343 NA non-coding upstream 63067 27800660 ~ 27801773 (+)
G1159437 NA non-coding upstream 78174 27781056 ~ 27786666 (+)
G1159550 NA non-coding downstream 159295 28025055 ~ 28077035 (+)
G1159548 NA non-coding downstream 180267 28046027 ~ 28057271 (+)
G1159667 NA non-coding downstream 332475 28198235 ~ 28198615 (+)
G1159656 NA non-coding downstream 336925 28202685 ~ 28203249 (+)
G1159675 NA non-coding downstream 352986 28218746 ~ 28267690 (+)
G1159435 NA other upstream 78675 27780222 ~ 27786165 (+)
G1158342 NA other upstream 96199 27493154 ~ 27768641 (+)
LOC110485126 NA other upstream 573622 27285432 ~ 27291404 (+)
LOC110487383 LOC106564416 other upstream 695046 26977083 ~ 27174368 (+)
G1159631 NA other downstream 253905 28119665 ~ 28125638 (+)
G1159684 NA other downstream 386770 28252530 ~ 28257974 (+)
LOC110513252 NA other downstream 473225 28338501 ~ 28698821 (+)
LOC110487355 LOC106561190 other downstream 606916 28472333 ~ 28500669 (+)
G1159924 NA other downstream 952974 28818734 ~ 28819448 (+)

Expression


Co-expression Network