LOC110487376


Basic Information

Item Value
gene id LOC110487376
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27907785 ~ 27915756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559305.2
tctggcGACGCTGCCAGCGTGACGaataatctagtggacggttcTTCAGAAACAGCTCAtcaaccacctcggtagcttgtTAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTGCTGTGTTTTAGACACACATCTGTCGTATCTACTTGTTAACCTATTTAATTTCATATTACGTTATTTTGTATTAGTCAGCTATAGTAGctggctggttaagttagcactAGCCTAGTCGCtaatgatagctagctaacgtcccCGAACATGAGCTCCCTAAACTACTCCCCTCCTgttaaagaagaggaggtctgctggacggaggaAGAAGCTCTGGGGCTGAACATTGTTGTGAAAgatgagaaggaagaggaggatgttacagtaaaacaaCAAGTGgagggtgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagagaaagaggaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaagaggaggatgcagtttttggagtgaaagaggaaggGGCGATTACTGTCACATTGGAAGATGAAGAGGTGGAGATTGGAGATCTAATTAACACAAgacctgagccctaggaccatgcctcaggactacccgacatgatgactccttgctgtcc
>XM_021559304.2
tggcGACGCTGCCAGCGTGACGaataatctagtggacggttcTTCAGAAACAGCTCAtcaaccacctcggtagcttgtTAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTGCTGTGTTTTAGACACACATCTGTCGTATCTACTTGTTAACCTATTTAATTTCATATTACGTTATTTTGTATTAGTCAGCTATAGTAGctggctggttaagttagcactAGCCTAGTCGCtaatgatagctagctaacgtcccCGAACATGAGCTCCCTAAACTACTCCCCTCCTgttaaagaagaggaggtctgctggacggaggaAGAAGCTCTGGGGCTGAACATTGTTGTGAAAgatgagaaggaagaggaggatgttacagtaaaacaaCAAGTGgagggtgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagagaaagaggaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaagaggaggatgcagtttttggagtgaaagaggaaggGGCGATTACTGTCACATTGGAAGATGAAGAGGTGGAGATTGGAGATCTAATTAACACAAgaggacctgagccctaggaccatgcctcaggactacccgacatgatgactccttgctgtcc
>XM_021559303.2
CGTGACGaataatctagtggacggttcTTCAGAAACAGCTCAtcaaccacctcggtagcttgtTAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTGCTGTGTTTTAGACACACATCTGTCGTATCTACTTGTTAACCTATTTAATTTCATATTACGTTATTTTGTATTAGTCAGCTATAGTAGctggctggttaagttagcactAGCCTAGTCGCtaatgatagctagctaacgtcccCGAACATGAGCTCCCTAAACTACTCCCCTCCTgttaaagaagaggaggtctgctggacggaggaAGAAGCTCTGGGGCTGAACATTGTTGTGAAAgatgagaaggaagaggaggatgttacagtaaaacaaCAAGTGgagggtgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagagaaagaggaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaagaggaggatgcagtttttggagtgaaagaggaaggGGCGATTACTGTCACATTGGAAGATGAAGAGGTGGAGATTGGAGATCTAATTAACACAAgagagatacGGGACTACCGTGGATCCTCTGAGGAGCCtcaacaacaacatgatgatgaagaggcagagaagagtctctccacatcagaacacctcaagaaacaccagcGGAGACCCACAGGAAAGAAATCTCactactgctctgactgtgggaaacgTTGCAGAACTTCATCAGAACTTAAAATACACCAGcgagtacacacaggagagaagccttatagctgtaatcaatgtgggaagagttttacgaCATCTAGCCATCTGattgtacaccagagaacacacacaggagagaaatcttatagctgtgatcaatgtgggaagagttttattaCATCTAGCATTCTGACTCGacacaagagaacacacacaggagagaaaccttatagctgtgaccaatgtgggaagagttttattaCATCTGGCATTCTGACTCGACACcatagaacacacacaggagagaaaccttatagctgtgaccaatgtgggaagagttttaataCATCTAGCATTCTGACTCGACACcatagaacacacacaggagagaaatcgtatagctgtgatcaatgtgggaagagttttgttcgaTCTGGCAATCTGacagtacaccagagaacacacacaggagagagaccgtatagctgtggtcaatgtgggatgAGTTATGTTCGATCTGACCATCTGacagtacaccagagaacacacacaggagagaaaccttatagctgtgaccaatgtgggaagagttttaataCATCTAGCATTCTGACtagacaccagagaacacacacaggagagaacccTTATGGCTGTGATCCATGTGGGAAGGGTTTTACTACATCTTGCTAGTTGTAtttacacaggagagaaatcttatggctgtgatcaatgtgggaagagttttacaaCATCTTGCCAGCTGACTTTAaaccagaggacacacacaggagagagatctTATAGCTGTGACCagagatactctgataaaagatctcCGATCAATCatcagaaaataaatacatgaaggagttgtttcatgatatcaatgaagtaatgtcacaatgtagaatgttttgccattgtagtaggagtattctaatgatgtcacaatgtagaacccTAACCCTTTGTCccctgttctattgatttcaacatgatatagatattagcctcaggggataaatccaggctctgaattgGAAGAGTTACTATTTATCTGATTTAACAAAAAGTGACTAACAAATAAGTTGTTACACTTAACATgttggtgacccacttgaatcaaatTGCACCACTTCAAAATGTAGCTGGCTGTTTTCTAcaagttgtcctctaaccagtgatgtacacattattcccatattccgtgtggtttttgagctgttagttttaacaggacgtgcaacctcatctccctcctgCTGCACAATTGATTTAAAAATTATATCGATGAGTGATGACAAATAAGTGTTGCGTTCTTTTATTTAACTTCcaaatgtagctgactgtcttctgcaTGTTGTCCTCTAATCAGTGAGGTGAaagatatctcccatttccatgtgtttttataGTTATGTTAGTTTCAACATCACGTACAACCTGATTTCCCCCCTAATCGATGTCAGTGATGTATTACTATTTGTCAAAACAACAGCGTTTTTGGTGCTTATGCAGTTTATAAGGTGCTTGTTTAAGAAAATACTTCATATGATTATTGTGGCAGATGTTTGTGTATATAGAACATTTTATCTTTAAGATTTCAAGTTATCACAAACTTTCTCTGCATTTGGAttattgatttggacacgttAAAACTGTGACATTGGGGCTATCCCACCTAGGAAAATgtcgttgaaaataagacttTGCCCGACGTACAATATACGTTTGGTATTAGTTGAAAGTGAAAGTTGAAAAGAAAACAATTTAATTTCAACAGCCTATACACATGGTCGCAGTGTAATAAATTGGTCTATAATCAATTGTATGAACAGTCCTACAACATTCAAGTGCTAAATGTCTTCATTTCACAACTGAAGAAGCATGATTCAAATCGCCTCATATTtctctgggctcgaacccagagtctggtggcacagctaacaCTGCATCGCAGGAGGCTGTGCACCACCCAGGAGGCtggaagttgttttctgttgttttCTCTTGTCAAACAGAAATATAGGATAAAGTTGTTGTCTTTAGGGGGAAggtgttacaggctttggtttttccatttatgttttgaggttggaggTTAGCAGGTAGGAAAGGAGGATACCTTGttcaattgaaatgtgtcttcagtgcactgattggtgtcaccttgttagtcagtatgtgttacacctgtgctggcttataCATCTCATTAGTGGGGAGGCGTTTCACTtgagctggtccaggttctatttaagagtgtctggcccagtggtctagttgtcttgatagatgtggagagtcaacacctttagttgaTCCACCTTTTTGGTTAAAGATGTTTTCATTTCAGGTTGAAGCTTCTTTCTGAAGAGAGCTTTTTTTGAAGaaaaaaatgaatacaaacaAGCAAACCTGGTTGGTTCCGGGGATTGGTATAGCAAATACCGTAAGATTTTCATGGACTGAAAAGGAGATGGAACCTTGGGGCAGGGAAACTTTTGGAAGGACCATATTGATGGGATGCCTCAGGATAGAGGTGAAGGAAGTACTCTGCCTTCAAGGCAACCCAAATGAAAAGGGTTTTGATGTGACGTTTCACAAGCAAGAGAAACATGATGATGTATTGAAGATGGCAAAGGAAGCGGAAAGAAAAGGACCCCTGTGCCATTATGCGGTGACCAGCCTGGCAAAGAACAACTTCAGGGTGGTCACCGTAAACATGTACAATCCGCACGTGAAGGATGAAGAagtgagggcctttctggggagatacatggacaatgtctcctcagcgaggtacctcagggactccctgggtttctggaacgggaggagagggttccaggcgttactcagggagtccccgaagagtgtggatggctacctccatcctccggcgatgttctccctgggggctgacagggaACACTCTACTATGCACGTCAGCCCCCGTTCTGCAGGCGTTGTATGGCCTACGGCCATATCCTGGCCTCGTGCAGCGCCAAGAAATGTCGTTTTTGTGGGTCGGAAGAACACGAGGCCAAGGAGTGTGACGAGCCCAAGGCTTGCCACGGGTGTGGCTCAAGAGCACACCTGTGGCGTGATTGCCCGGCTCGTCACCGGTCATACGCGTct

Function

NR:

description
zinc finger protein 436-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559305.2 False 694 mRNA 0.45 2 27907785 27911556
XM_021559304.2 False 695 mRNA 0.45 2 27907787 27911556
XM_021559303.2 True 3918 mRNA 0.43 2 27907802 27915756

Neighbor

gene id symbol gene type direction distance location
LOC118938246 LOC106595566 coding upstream 42025 27863508 ~ 27865760 (+)
LOC110485129 LOC106591690 coding upstream 119212 27768154 ~ 27788573 (+)
LOC118938453 NA coding upstream 183368 27722180 ~ 27724417 (+)
LOC118938440 NA coding upstream 277015 27258575 ~ 27630770 (+)
LOC118938450 LOC106604339 coding upstream 363092 27539872 ~ 27545029 (+)
LOC118938251 NA coding downstream 28700 27944456 ~ 27950411 (+)
LOC110487397 LOC106590567 coding downstream 109221 28024977 ~ 28035081 (+)
LOC118938252 LOC106566134 coding downstream 146010 28061766 ~ 28064668 (+)
LOC110487371 NA coding downstream 159213 28074969 ~ 28077602 (+)
LOC110487363 LOC106594826 coding downstream 265028 28180784 ~ 28201594 (+)
G1158375 NA non-coding upstream 54991 27851634 ~ 27852794 (+)
G1158371 NA non-coding upstream 92800 27814382 ~ 27814985 (+)
G1158351 NA non-coding upstream 96751 27810093 ~ 27811034 (+)
G1158343 NA non-coding upstream 106012 27800660 ~ 27801773 (+)
G1159437 NA non-coding upstream 121119 27781056 ~ 27786666 (+)
G1159550 NA non-coding downstream 109299 28025055 ~ 28077035 (+)
G1159548 NA non-coding downstream 130271 28046027 ~ 28057271 (+)
G1159667 NA non-coding downstream 282479 28198235 ~ 28198615 (+)
G1159656 NA non-coding downstream 286929 28202685 ~ 28203249 (+)
G1159675 NA non-coding downstream 302990 28218746 ~ 28267690 (+)
G1159435 NA other upstream 121620 27780222 ~ 27786165 (+)
G1158342 NA other upstream 139144 27493154 ~ 27768641 (+)
LOC110485126 NA other upstream 616567 27285432 ~ 27291404 (+)
G1159631 NA other downstream 203909 28119665 ~ 28125638 (+)
G1159684 NA other downstream 336774 28252530 ~ 28257974 (+)
LOC110513252 NA other downstream 423229 28338501 ~ 28698821 (+)
LOC110487355 LOC106561190 other downstream 556920 28472333 ~ 28500669 (+)
G1159924 NA other downstream 902978 28818734 ~ 28819448 (+)

Expression


Co-expression Network