LOC110487397 (LOC106590567)


Basic Information

Item Value
gene id LOC110487397
gene name LOC106590567
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28024977 ~ 28035081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559329.2
CGGCGATGTGCGTCTTTCAGGCGACGCTGCtagcgtgacgtataatctagtggacggttcTTCAGAAACAGCTCGtcaaccacctcggtagcttgctatcCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTCTATATTAGCTACTGTGTTTTAGACACACTTCTGTCGTATCTACTTGTTAACCTATTTAATATTACGTTATTTTGTATTAGTTAAGTTAGCTCTGGCCTAGTTGCTAATGATAGCTAcctaacatccccgaccatgaaCTCCCTAAACTACTCCCCTCCTgttaaagaagaggaggtctgctggacggagaaagaagctctggggctgaacattgttgtgaaagaggaggaggaggatgttacagtaaaacaagtagagggtgaggctgttaccgtgaaagaaaaagagaaagacgtttcagtgaaagaagaggaagactcgttcagagtgaaagaggaggaaggggagattactgtcacattggaggaagaagaggaggttggAGATCTGTTTAATACCAgagagagacgggactACCGTGggtcctctggggagcctcaacaacatcatgatgctgacgaggcagagcaGAGTCTCTCTACATCAGAACACCTCAATaaacaccagcagagacccaCACGGAAGAGAattcactgctgctctgactgtgggaagagattcacctcctcatcaggcattaaaatcaccagaaaatacacacaggagagaaaccttatagttgtgatcaatgtgggaagagttttactacatctggctctctgactctccatcagagaacacacacaggagagaaaccgtatatatgtgatcaatgtgggaagagttttgttcgaTCTGACCAGCTGACATTACaccaaagaacacacacaggagataaatcttatagctgtggtcaatgtgggaagagatttgttACATCTAGCTCTCTGAcattacaccagagaacacacacaagagagaaatctta

Function

NR:

description
zinc finger and SCAN domain-containing protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559329.2 True 1010 mRNA 0.44 2 28024977 28035081

Neighbor

gene id symbol gene type direction distance location
LOC118938251 NA coding upstream 74566 27944456 ~ 27950411 (+)
LOC110485128 LOC106595049 coding upstream 81201 27915251 ~ 27943776 (+)
LOC110487376 NA coding upstream 109221 27907785 ~ 27915756 (+)
LOC118938246 LOC106595566 coding upstream 159217 27863508 ~ 27865760 (+)
LOC110485129 LOC106591690 coding upstream 236404 27768154 ~ 27788573 (+)
LOC118938252 LOC106566134 coding downstream 26685 28061766 ~ 28064668 (+)
LOC110487371 NA coding downstream 39888 28074969 ~ 28077602 (+)
LOC110487363 LOC106594826 coding downstream 145703 28180784 ~ 28201594 (+)
LOC118938258 NA coding downstream 301599 28336680 ~ 28337325 (+)
LOC110513252 NA coding downstream 303420 28338501 ~ 28698821 (+)
G1159469 NA non-coding upstream 104987 27846124 ~ 27919990 (+)
G1158375 NA non-coding upstream 172183 27851634 ~ 27852794 (+)
G1158371 NA non-coding upstream 209992 27814382 ~ 27814985 (+)
G1158351 NA non-coding upstream 213943 27810093 ~ 27811034 (+)
G1158343 NA non-coding upstream 223204 27800660 ~ 27801773 (+)
G1159548 NA non-coding downstream 10946 28046027 ~ 28057271 (+)
G1159667 NA non-coding downstream 163154 28198235 ~ 28198615 (+)
G1159656 NA non-coding downstream 167604 28202685 ~ 28203249 (+)
G1159675 NA non-coding downstream 183665 28218746 ~ 28267690 (+)
G1159679 NA non-coding downstream 197576 28232657 ~ 28262037 (+)
G1159435 NA other upstream 238812 27780222 ~ 27786165 (+)
G1158342 NA other upstream 256336 27493154 ~ 27768641 (+)
LOC110485126 NA other upstream 733759 27285432 ~ 27291404 (+)
G1159631 NA other downstream 84584 28119665 ~ 28125638 (+)
G1159684 NA other downstream 217449 28252530 ~ 28257974 (+)
LOC110487355 LOC106561190 other downstream 437595 28472333 ~ 28500669 (+)
G1159924 NA other downstream 783653 28818734 ~ 28819448 (+)

Expression


Co-expression Network