LOC118938259 (LOC106566139)


Basic Information

Item Value
gene id LOC118938259
gene name LOC106566139
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28716818 ~ 28721736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940703.1
AAGGCAATGCTGCtagtgtgacgtataatctagtggacggaacgcttctttcaacagcagcaacagttagTCAGCCACCTCGGTAGCTTGTTAGACAAAATAGCTGAACCAATAAAGCTCTTTAGACGCTTTCGTGGGTATTAGCCACTGTGTTTTAAAGTTATCCGATTTGATTTCATATTTACTGTGTTGTTATTATTCAGCTAGCGGGCTGGTTAATttagcattagcctagctagctaacatctccgaccatgagttcactaagctactctccttCTGCTAAAGAAGAGGATGTCTGgtggacggagaaagaagctctcgtcaaagaggagaaggaagagaaggatgtcacagtaaaacaagaagttgAGAGTGAGGCTGTTATAGttaaagaagagaaagacgtttcagtgaaagaaggaGAAGactcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagaaggatgttacaatacaaaaacaagtagagagTGAGGCTGTTACagggaaagaagaagagaaagacgtttcggtgaaagaagaggaagacgcgttcagagtgaaggagggggaggatgttacagtaaaagaagaggaggatgcagTTTTTGAAGTGAAAGGGGAGATTACGGCCACATCGGAAGAGGAGGaaactggatatctgggcccgATTTCCCAAACGCAATTTAAGGCATCCAgtggttctaacgatgaacttagccATCAGATGGTTTTGAGAAACCGGGCCGTGATTACCACTGgagagatacgggactatcgtggatcctctggggagcctcaacaacatcatgatACTGACGAGGCAGAGCAGAGTCTCTCCACATCAGAACtcctcaagaaacaccagcagagacccacagggaaTATATCTATTTGCTGCTCTGCCTGTGGGAAATGTTGCAAATCTTCATCAGAACTTAAAATACACCAGCaagtccacacaggagagaaaccacactgctgctctgactgcggGAAACGTTTCTCAAGATCAAATTCACTAAAAGTACACCTGagaattcacactggagagaaatcTCACCACTGTTTTGATTGTGGGAAAAGTTACTTAAGATTAAAATCACTAAAAGTACACATGagaattcacactggagagaaaccttatagatgtgatcaatgtgggaagagttttactataTCTAGCTGTCTGACTATACATCAGAGAACACATACAGGAGAAAAACCgtatagctgtactcaatgtgggaagagtttcactaCATCTAGCCAATGGattgtacaccagagaacacacacaggaaagaAACCTattagctgtactcaatgtgggaagagtttcactcacttaggcagcctgttatcacaccagagaaaacacacaggagagaaatcttataactgtgatcaatgtgggaagactTTTACTCAGTCAAGCAACCtggtatcacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactaaaTCGAGCAGTCTTATTGTacacaagagaacacacacaggagagaaacctcatagctgtgatcaatgtgggaagagttttgttacaTCTAGCCGTCTTCTtgaacaccagagaacacacacaggagagaaacctcatagctgtgat

Function

NR:

description
PREDICTED: zinc finger protein 2 homolog, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940703.1 True 1685 mRNA 0.43 2 28716818 28721736

Neighbor

gene id symbol gene type direction distance location
LOC110487366 NA coding upstream 3029 28707695 ~ 28713789 (+)
LOC118938254 NA coding upstream 108125 28604589 ~ 28608693 (+)
LOC110487378 LOC106613297 coding upstream 113248 28595965 ~ 28603570 (+)
LOC110487355 LOC106561190 coding upstream 216149 28472333 ~ 28500669 (+)
LOC110513252 NA coding upstream 368282 28338501 ~ 28698821 (+)
LOC118938260 LOC106593417 coding downstream 29776 28751512 ~ 28753479 (+)
LOC110485131 LOC106571816 coding downstream 46480 28768216 ~ 28774940 (+)
LOC110486062 LOC106585334 coding downstream 137799 28859535 ~ 28860605 (+)
rrp36 rrp36 coding downstream 446665 29168401 ~ 29172521 (+)
si:ch211-126j24.1 LOC106585260 coding downstream 544882 29266618 ~ 29370947 (+)
G1159547 NA non-coding upstream 16575 28660567 ~ 28700243 (+)
G1159847 NA non-coding upstream 45489 28670046 ~ 28671329 (+)
G1159821 NA non-coding upstream 84610 28630299 ~ 28632208 (+)
G1159781 LOC106561441 non-coding upstream 164015 28551842 ~ 28552803 (+)
G1159562 NA non-coding downstream 4173 28725909 ~ 28726413 (+)
G1159893 NA non-coding downstream 41970 28763706 ~ 28764120 (+)
G1159897 LOC106591026 non-coding downstream 61694 28783430 ~ 28784093 (+)
G1159901 NA non-coding downstream 64811 28786547 ~ 28788374 (+)
G1159915 NA non-coding downstream 81519 28803255 ~ 28803498 (+)
G1159684 NA other upstream 458844 28252530 ~ 28257974 (+)
G1159631 NA other upstream 591180 28119665 ~ 28125638 (+)
LOC118938246 LOC106595566 other upstream 851111 27863508 ~ 27865760 (+)
G1159924 NA other downstream 96998 28818734 ~ 28819448 (+)
G1161908 NA other downstream 577022 29298758 ~ 29299656 (+)
G1162364 NA other downstream 772626 29494362 ~ 29494902 (+)
G1162753 NA other downstream 1109018 29830754 ~ 29831296 (+)

Expression


Co-expression Network