LOC118938260 (LOC106593417)


Basic Information

Item Value
gene id LOC118938260
gene name LOC106593417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28751512 ~ 28753479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118938260
catggggtcagcaacggttaaataaaaaaataccatcAACCTGTGGAATCACCTTAAGAACACCCACCCAGAAGCCCATAAGGAAGCAATGATGAAAAAAGCAAATGCAAATTCTTCACAAGGAAAAAGTGATACAGACACGTCACAGACATCGCAGGCTACAATCTTACAACTTTTTAATAAACAAGCAAAATGGCAGGACAAAGACCCAAGGGCCAAAAAGATGGATGTAGCAATTATTGAGCTGATTGCCACTGACAACCAGCCATTCacagtggtgtctgatgttggCTTTCAGCGGCTGATTACTCTTGCTGAACAGGATCAAAGATGAATGCTAGATAAAACACGTGAAAGAGTTGTGATAAAAGTGAAGAATCTGGTGGCACTAGTGAACGCTCCACACGTGGCATTCACAACTGACTGCTGGTCAGGCACTACAGAGTCCCTGATGAACCTTACTGGACATTTTATTGATAATGTCTGGACAAGAAAGCAGGTTGTGCTGAATGTCAAGACTATGACTGGATCACACACAGGAAACTACATCAGAGAGATGTTTTTGACCATGTTGGAATACTGGGAAATCCACACAGAACGTGTAGTGCTAGTCCTCAGGGACAGTGGGGCAAACATGGTGAAAGGTATGAGACTGGCAGAGCTTCCAGACTTCAGCTACAGAGCACACACCCTACAGCTTGTAATCAATGATGGCCTATCCAGTCAGAGAGCTGTGCTAGACATTATTGCCATGTTGAAGAGCTGTGCAACTCACTTTGACCACTCCGTACTGGACAAACAGAGGCTGAGGGCCATTCAGGAAGAGCTTGGCCTCCCCAAACACAACATCATCCAAGCAGTTCAAACTCGCTGGAACTCAACACTACACATGTTGCAGAGGATGTTTGAACAGAGGCATGCACTGAATGTGTATGCAGGTGAATACGGACACATCAGCAGTTTGTCTGCTGCACAGTGGGACATTGTCTCTAACCTAATTGAGACTCTGGCACCTATGGAGGAGGTGACACTGGAGATGAGCCACTCCAACTCTACAGCAGCATGAAGCATCCCCAGTGTGACGGTGCTGAAGCTGATGCTGCAGCAGGAGGGTTCTTCTACTCAAGGCATCAAAACTTTACGGAACACCATGTTGGACAGTCTGACAAGGAGGTTCTCCAATTCCGAGGAGACAAAGGGCCTGGTGCTGGCAATTGTCCTGGATCCACGTTACAAGGGCTATGCCTTCAGCTCAGGGACAGCACTAGAGAAAGCAAGAGTGGCTGAAGGAGGAGTCTGACCTACTAAGGAAACCAAATCCAAGAGCCACAGCGGAAGGGACAAGTGAAGAGGAGGACCCAGATCCAGGTGCAAAAAGGCGAAGAGTCCAGGTAGATCAGCCACCCAGTCTGGTGGATAGCCTCTATGCTAGAATCCTTGGAAGCAAAGAGAGCAGGGCTGAAGTCCAGCGCAGTTTTGAAATTGAGTTTGAGCGTTACCTCACAGAGCCTGTCATTGACAGAAAGAGCGGCTTGCCTTTGGAGTGGTGGAAGCAgaattagtattttttttatttttacatttttttatttaacctttaattaactaggcaagtaagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgtcagcttgggggtttgaacttgcaaccttccggctactactctaaccactaggctaccttgccacCCCAGAGGACAGACTTCAATCACTCGCTCCACTGGCAAAGAAGTTTCTCTGTCCCCCACCTTCTTCGGTCCCAAGAGAGAGAGTGTTCAGTGAGGTGGGGAACATTTATGATAAGCAGAGGAGCTGACTGACAGGGGAGCATGCAGACAAGCTCTGCTTTCTgcactacaacctaaaacttctgaactgggaatattgaagacccatgaaagctggtggttcctttga

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118938260 True 1968 mRNA 0.47 1 28751512 28753479

Neighbor

gene id symbol gene type direction distance location
LOC118938259 LOC106566139 coding upstream 29776 28716818 ~ 28721736 (+)
LOC110487366 NA coding upstream 37723 28707695 ~ 28713789 (+)
LOC118938254 NA coding upstream 142819 28604589 ~ 28608693 (+)
LOC110487378 LOC106613297 coding upstream 147942 28595965 ~ 28603570 (+)
LOC110487355 LOC106561190 coding upstream 250843 28472333 ~ 28500669 (+)
LOC110485131 LOC106571816 coding downstream 14737 28768216 ~ 28774940 (+)
LOC110486062 LOC106585334 coding downstream 106056 28859535 ~ 28860605 (+)
rrp36 rrp36 coding downstream 414922 29168401 ~ 29172521 (+)
si:ch211-126j24.1 LOC106585260 coding downstream 513139 29266618 ~ 29370947 (+)
LOC110486069 klc4 coding downstream 619822 29373301 ~ 29409473 (+)
G1159562 NA non-coding upstream 25099 28725909 ~ 28726413 (+)
G1159547 NA non-coding upstream 51269 28660567 ~ 28700243 (+)
G1159847 NA non-coding upstream 80183 28670046 ~ 28671329 (+)
G1159821 NA non-coding upstream 119304 28630299 ~ 28632208 (+)
G1159893 NA non-coding downstream 10227 28763706 ~ 28764120 (+)
G1159897 LOC106591026 non-coding downstream 29951 28783430 ~ 28784093 (+)
G1159901 NA non-coding downstream 33068 28786547 ~ 28788374 (+)
G1159915 NA non-coding downstream 49776 28803255 ~ 28803498 (+)
G1159922 LOC106586027 non-coding downstream 60686 28814165 ~ 28814490 (+)
LOC110513252 NA other upstream 52691 28338501 ~ 28698821 (+)
G1159684 NA other upstream 493538 28252530 ~ 28257974 (+)
G1159631 NA other upstream 625874 28119665 ~ 28125638 (+)
LOC118938246 LOC106595566 other upstream 885805 27863508 ~ 27865760 (+)
G1159924 NA other downstream 65255 28818734 ~ 28819448 (+)
G1161908 NA other downstream 545279 29298758 ~ 29299656 (+)
G1162364 NA other downstream 740883 29494362 ~ 29494902 (+)
G1162753 NA other downstream 1077275 29830754 ~ 29831296 (+)

Expression


Co-expression Network