LOC110486070 (hebp1)


Basic Information

Item Value
gene id LOC110486070
gene name hebp1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29419363 ~ 29436445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557393.2
TGACGTCATCGTTAGTGCTGCTGGCAGAACACTAGTGCGGCATTGAATGTATATGTCCTGTTTTGATTGTACAGTAGATCAGAAGAAGTAGTGCTCAAATACGATCCTTTACTTTGTTGACCAGATCTGCCCGGGCTGTGGACGAAAACAATGGCACTAATCTCCCTCGAGGATCTCGACGGATTGGAGGATGAAGAACTGGACAATGACATCACTGACAACCCTGATCCAATGGAGGACGACGAGCAGCAGAGGCTGTACACCCATTGGCAGGCGATCGCCAGCACACACCAGGTGTCCGTCCCCCGAGAAATGACAGGACCAATTCAAGAGCTTACTCGACGGAACCAAACCCAAGAAAGAGAGCAGGTCCCCTTTACCTCCGTCTCTCTGCATGAAAAGCTGGGCGAGGTGCTGTTTGAGGAGCGGGTGTACCCTGCAGGGAAGTGGGCGTGCATCACTAAAGGGGAGAAGCTGTACGAGCAGAGCATCTCCATGGGCTTCATGAAACTCATGAAATTCATCTGCAAGGAGAACTCTGTTGGACGCTATTTGGGAATGACTGTACCCATTGTGAACAGTATCCAAATGCTGGAGGACGGCAATGGCTTTCAGAAAGACATCTTGACTGCATACTACCTGCCTGCTGAGTTCCAGGCCAACCCGCCCCAGCCGACTGACCTAGACATCACCATACTCCATAGGGAGGCTTTACGAGTCATCACCAGGACTTTCTTTGGCACCACCACGGAGGAGACAATCATGCCTCAGATTAACCTGCTGTGGGAGATGCTGGGCCCCAGCGAGGAGATGCATCGCTACTCCTACATGGTGGCTGTCTACGACAACCCTGGGGTGTCCTGTCGCAGGAACGAGATCTGGTTCATCCGACGAGACCCCTAAATCTCTTATAACATCCACCTGTCCCCTCCTGTATCACCCTGACACccccctatcccccccccccctctgtgccTCTAGGGTCGTGTTCATTTGCCGTTTAATGGAATAAAAGggacaaacagggagggactacctggacttggtCCAATAAGCAACACTCATTTTCAGTTTCCAgtgcaaaatgtttttaaaaaatgtttgtttttgtttttgcgtGCCCTAATCAACACAACCCAGATGATTCCTGTCATGGGGATAGAGTATGGATTAAAATGGGAGGAATGGCTCTTGGGTTGGTTTTAGAGGTAAACATGACAAGATTACTTTAAAGATGGTATTAGGTAGACAGTATGGCAGGAAAATACTTATTTAACATTCACTGAGATGGTATGCGTTTCTATGCTCTAGGGGAGCACAAGAAAATACTAACTTCAGTGGCATTTATACCATGTACACAACCAAAAAATACAAGTATATTGTATCTCTGTGAAAAACTGTCTGGGCATTACAAGAGTTAAAACATGATGGAAATATAAGAGTTATCTTTATTTTTCTTGCTTTTTatgttaaaaaaaattatataatcTAATCATTGCAAACTGGTGTCACATAATGTCACACTCcgttttacatttgagtaatttagcagacactcttatccagagcgatttataGCAGTGAGTGCACGCTttttaatactttttttcttAATGATGTTGATACTATAATGTTTTTTTGAATGTCTTATAGGTCTGTACCTTACTAGAAATATGTTGTATTTGCAGTTGACTAGAGTAGGCATCCAGGTTTAACCTATTGTTATCCATAGGTAATTCTGACACAACTTTGTCATTCAAAGTTACTTGCTATGATATGTGGGTGTTCTCGTACTCTTAACTGTCATTAAGTTTTATCCTTCTAGTGAATTTTGCCCACACTTTGCTACTTTACCTACATTTTGAGGCTGGTGTAGGGATTTTGGGTATACGTGTCCTAATAAGTAAATGACTATCCCCCTTCCCCCAGCCACAAAATGATTGACAGATTGGTAATTTGTTACCTTCAGTTGCCACTAGGTGTCAACCAAACAGTAACGTTTGTATTATGTTTTTTGTCTGTTTATTTGCTTATTGGTGAATAGCGAATATCTCACAAATGAATAGATTGGTTTTGGTGAGGTTAGTTGTAAATGGAGCTGAGACTGGGACCAGGCTCTTTAGGTTTTGAGGAAGGTTCAAGCTTTTTGAAGATTCATAGCTATAGTTAATGATGGTTGGGGAATGGAAGTTTAATTTAAGTGACTTATGAACCTGTCTGTTCAGCATGGCCAAATGATGTGCTCTTACTGTGCTTGCCTCTTTTTTGAAATATATTTCCCAGAATAagtgtgtatttgtttgtattCTCCAGTAATTAGTACGGTATACATTTGATATGTTAAAATTGTACCCGGCTTCTCTTTTGTGACCTTGTATTTCTATGCTGTTTTCAACTGTTTTCAATGCATACATTTCAACATTTCAGTGTGAATTGTAGTGGGTTGCTTcaatttaaagctgcaatatataactttttgggcaacctggCCAAATTCAAATAGAATTGTGAGGAGTTATAGATcattcattctcattgaaagcaagtctaagatgtagtagatctgttctatgtgtgttaTTTCTATGCTTCTGTTCATAAGTTTTGTTTTTACCTCTTTTACTTTCTGTTTTGTACAATAACTTCAAACaactgaaaatactatatttttggttatgaaaatatatttcacagcagtttagatggtacaatgatcccTCTACACTATTTTTGCTTGTTTTGTTACAAACCAACATTTGGAATTTTAGCAAACAGAGAGATTTCTTTATAGTGCATCTTTAAACTACTTAAAAGATTGCCAGTGTAGGTTAATGGAGATTTGATATACATTTACACTTAAAAAcgtaccgtgccttcagaaagtattcacaccccatttactttttccccattttgttgtgttacagcctgcatttaaaatgtattcaatttagatgttgtgtcactgatctacacacaatactgcataatgtcaaagtggatcttttatttttttt
>TU1325118
GTGCGGCATTGAATGTATATGTCCTGTTTTGATTGTACAGTAGATCAGAAGAAGTAGTGCTCAAATACGATCCTTTACTTTGTTGACCAGAGTAGGCATCCAGGTTTAACCTATTGTTATCCATAGGTAATTCTGACACAACTTTGTCATTCAAAGTTACTTGCTATGATATGTGGGTGTTCTCGTACTCTTAACTGTCATTAAGTTTTATCCTTCTAGTGAATTTTGCCCACACTTTGCTACTTTACCTACATTTTGAGGCTGGTGTAGGGATTTTGGGTATACGTGTCCTAATAAGTAAATGACTATCCCCCTTCCCCCAGCCACAAAATGATTGACAGATTGGTAATTTGTTACCTTCAGTTGCCACTAGGTGTCAACCAAACAGTAACGTTTGTATTATGTTTTTTGTCTGTTTATTTGCTTATTGGTGAATAGCGAATATCTCACAAATGAATAGATTGGTTTTGGTGAGGTTAGTTGTAAATGGAGCTGAGACTGGGACCAGGCTCTTTAGGTTTTGAGGAAGGTTCAAGCTTTTTGAAGATTCATAGCTATAGTTAATGATGGTTGGGGAATGGAAGTTTAATTTAAGTGACTTATGAACCTGTCTGTTCAGCATGGCCAAATGATGTGCTCTTACTGTGCTTGCCTCTTTTTTGAAATATATTTCCCAGAATAagtgtgtatttgtttgtattCTCCAGTAATTAGTACGGTATACATTTGATATGTTAAAATTGTACCCGGCTTCTCTTTTGTGACCTTGTATTTCTATGCTGTTTTCAACTGTTTTCAATGCATACATTTCAACATTTCAGTGTGAATTGTAGTGGGTTGCTTcaatttaaagctgcaatatataactttttgggcaacctggCCAAATTCAAATAGAATTGTGAGGAGTTATAGATcattcattctcattgaaagcaagtctaagatgtagtagatctgttctatgtgtgttaTTTCTATGCTTCTGTTCATAAGTTTTGTTTTTACCTCTTTTACTTTCTGTTTTGTACAATAACTTCAAACaactgaaaatactatatttttggttatgaaaatatatttcacagcagtttagatggtacaatgatcccTCTACACTATTTTTGCTTGTTTTGTTACAAACCAACATTTGGAATTTTAGCAAACAGAGAGATTTCTTTATAGTGCATCTTTAAACTACTTAAAAGATTGCCAGTGTAGGTTAATGGAGATTTGATATACATTTACACTTAAAAAcgtaccgtgccttcagaaagtattcacaccccatttactttttccccattttgttgtgttacagcctgcatttaaaatgtattcaatttagatgttgtgtcactgatctacacacaatactgcataatgtcaaagtggatcttttattttttttatttttacaaattaata
>TU1325120
AGGACTTTCTTTGGCACCACCACGGAGGAGACAATCATGCCTCAGATTAACCTGCTGTGGGAGATGCTGGGCCCCAGCGAGGAGATGCATCGCTACTCCTACATGGTGGCTGTCTACGACAACCCTGGGGTGTCCTGTCGCAGGAACGAGATCTGGTTCATCCGACGAGACCCCTAAATCTCTTATAACATCCACCTGTCCCCTCCTGTATCACCCTGACACccccctatccccccccccccactccccccc

Function

symbol description
hebp1 Predicted to enable heme binding activity. Predicted to be involved in circadian rhythm. Located in extracellular exosome.

NR:

description
heme-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557393.2 False 3017 mRNA 0.40 6 29419363 29428566
TU1325118 False 1428 lncRNA 0.34 2 29419397 29428583
TU1325120 True 252 lncRNA 0.58 2 29426276 29436445

Neighbor

gene id symbol gene type direction distance location
LOC110486069 klc4 coding upstream 9890 29373301 ~ 29409473 (+)
si:ch211-126j24.1 LOC106585260 coding upstream 51615 29266618 ~ 29370947 (+)
rrp36 rrp36 coding upstream 246842 29168401 ~ 29172521 (+)
LOC110486062 LOC106585334 coding upstream 558758 28859535 ~ 28860605 (+)
LOC110485131 LOC106571816 coding upstream 644423 28768216 ~ 28774940 (+)
LOC110486071 LOC106564807 coding downstream 15557 29444123 ~ 29485813 (+)
LOC110486072 LOC106585018 coding downstream 69496 29498062 ~ 29591905 (+)
LOC110486077 LOC106564801 coding downstream 226990 29655556 ~ 29706148 (+)
ncx ncx coding downstream 413439 29842005 ~ 29894155 (+)
LOC110485133 LOC106608247 coding downstream 509684 29938250 ~ 30038173 (+)
G1161937 NA non-coding upstream 57204 29361806 ~ 29362159 (+)
G1161933 NA non-coding upstream 70941 29348158 ~ 29348422 (+)
G1161931 NA non-coding upstream 71831 29347229 ~ 29347532 (+)
G1161915 NA non-coding upstream 113638 29305423 ~ 29305725 (+)
G1161961 NA non-coding downstream 9233 29437799 ~ 29438918 (+)
G1162361 NA non-coding downstream 64026 29492592 ~ 29493126 (+)
G1162365 NA non-coding downstream 66686 29495252 ~ 29495839 (+)
G1162388 NA non-coding downstream 89142 29517708 ~ 29545477 (+)
G1161908 NA other upstream 119707 29298758 ~ 29299656 (+)
G1159924 NA other upstream 599915 28818734 ~ 28819448 (+)
LOC110513252 NA other upstream 720542 28338501 ~ 28698821 (+)
G1162364 NA other downstream 65796 29494362 ~ 29494902 (+)
G1162753 NA other downstream 402188 29830754 ~ 29831296 (+)
LOC110486104 chchd5 other downstream 1685745 31113781 ~ 31119681 (+)
LOC110486134 LOC106600876 other downstream 2573185 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 3286690 32714937 ~ 32722676 (+)
LOC110487355 LOC106561190 other upstream 920191 28472333 ~ 28500669 (+)

Expression


Co-expression Network