LOC118938065 (LOC106564780)


Basic Information

Item Value
gene id LOC118938065
gene name LOC106564780
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30523932 ~ 30552653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939734.1
ATGCCAGTGCTCCCCAGTGTCTTCAGAGCCAGACGGGACCCAGCCGAGGTAGAGGGAGCCCCTACAACAATCGATCCCGTGGGAACCCCTGCACCAACAGAGCTACACAGAATACCCATATCCATCCGACTGAACATAATACCCACACAAACAGAGACGTGCAAACACAACACACTAATCAATCCAGTGGAAACCCCTACAACTATCAATCCAGCGGGAACCACGGCACCAACCAAGCGAGACGGAATCCCCATATCTTTACGACGGAACCTAATCCCCACACCAACAGAGCCAGGCAAACCATCCACACCAACCAATCCAGTGGGAATCCCTACACCAACCAATCTAGTTGGAACTCCTACAGCAATTGATCCATCAGGAACCCCTGCACCAACTATGCTAGACAGAATCCCCACATCCATCAGCCTGAACAAAATTACCAGACTAACAGAGCCAAGCAAACACTCCACATCAACCAATCCTGTGGGAACCCCTTCACCAATTAATTCAGTGGGGACCCCTGCACCAGCCAAGCTAGACGGACTCCCCACACCAACAGACCCAGGAAAACCCTCCACATCAACCAAGCTAGACGGAATCCCCACATACATCTGCCTGAATGGAATCCCCACATCCATCTGCATGAACGGAACCCCCACCTCGATACAGTCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCAGACCTATACAGCCAAAATTCCCCACACCAATACAGCCAGGCAAACCCTCCACACAAAATAATCCAGTGGGAACCCCTATACCAATTGATGAAACATCTGACTCCTCTGAGCACCAGGACCAAGAAATGCAAAGGCCAAAAAGAAAAATGTGGACAGAGGGAGATCTAATCGTTGCTGAAGACGGTGCAACCATTCAAGCACAAAAGAAAATCAAAACAACAGAAGAGTGGCTGAACATGGATACGGATAGGCCCACGGTGTCAAGACATGCAGAGGTAGACACCGAAATATTAGATCAACTAGAAAAACACAAAGAAGAGTCGCTGAACATGGATACGGATAGGCCCATGGTGTCAAGACATGCAGAGGTAGACACTGGAGTATTAGATCAATTAGAAAAGAGCAGCATTGTACAAGCAACCAACAAGCAAACTTTGTGGGCTATAAACTGCTTTAAGGACTGGCTGGCAGAGAAACAGATGATAGTGGATTTTTCAACCATTGAGAAATCTGAAATGAATGTCCTCTTGCGAGATTTTTACTGTTCTGTTCGAAGGGGTAAAGGTGGGGAGTATTGCATCCCAAGCTATATCGGAATCCGGGCTGGCGTGAACAGATTCATTAACCTCCCTCCCCTTAGCAGATCCTGGTGCTTGATGAAGGACAGTGAGTTTACCTCCTCTAATAATGTATTTCTTAGGGTACTAAAGAAACTCAGACGAGAGGGCAGGGACAAAACTACCCATCCTAAGGTGATTACAGCACAAGaccttgagattcttcaaaactCTACTGTGCTAAGCCCCTACACACCCAGAGGACTAGTGAACAAAGTGTGGTTTGATATCCAGTTACACTTTGGCCCCAGAGGAAAAGAGGGCAATAGACGGCTAAGGCCACAGTCGTTTGTAATAAGcgctgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTGGGCAGGCGGGAGACTACGCCAGCGCTGGGCAGGCGGGAGACTACGCCAGCGCTgggcaggcgggagactccgccAGCGCTGGATGa

Function

NR:

description
zinc finger MYM-type protein 3-like

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939734.1 True 1848 mRNA 0.51 5 30523932 30552653

Neighbor

gene id symbol gene type direction distance location
LOC110486082 LOC106584819 coding upstream 240887 30264043 ~ 30283045 (+)
LOC110486081 LOC106584808 coding upstream 284686 30177711 ~ 30239246 (+)
LOC110486080 LOC106584788 coding upstream 381522 30130837 ~ 30142410 (+)
LOC110486079 LOC106564790 coding upstream 401848 30040273 ~ 30122084 (+)
LOC110485133 LOC106608247 coding upstream 485759 29938250 ~ 30038173 (+)
LOC110486087 LOC106584892 coding downstream 27265 30579918 ~ 30598703 (+)
LOC110486099 NA coding downstream 297927 30850580 ~ 30852604 (+)
LOC110485141 LOC106600922 coding downstream 352145 30904798 ~ 30962319 (+)
LOC110486104 chchd5 coding downstream 561128 31113781 ~ 31119681 (+)
LOC110486108 LOC106607428 coding downstream 688247 31240900 ~ 31243127 (+)
G1163565 NA non-coding upstream 1934 30521791 ~ 30521998 (+)
G1163559 NA non-coding upstream 4815 30518812 ~ 30519117 (+)
G1163552 NA non-coding upstream 10323 30513115 ~ 30513609 (+)
G1163549 NA non-coding upstream 12042 30511552 ~ 30511890 (+)
G1163541 NA non-coding upstream 16535 30507098 ~ 30507397 (+)
G1163599 NA non-coding downstream 1966 30554619 ~ 30572338 (+)
G1163669 NA non-coding downstream 78840 30631493 ~ 30707608 (+)
G1163674 NA non-coding downstream 97387 30650040 ~ 30714455 (+)
G1163687 NA non-coding downstream 136296 30688949 ~ 30750735 (+)
G1163685 NA non-coding downstream 156663 30709316 ~ 30713503 (+)
G1162753 NA other upstream 692636 29830754 ~ 29831296 (+)
G1162364 NA other upstream 1029030 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 1152985 29266618 ~ 29370947 (+)
G1161908 NA other upstream 1224276 29298758 ~ 29299656 (+)
G1159924 NA other upstream 1704484 28818734 ~ 28819448 (+)
LOC110486134 LOC106600876 other downstream 1449098 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 2162603 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 2676460 33001356 ~ 33230495 (+)
G1166318 NA other downstream 2687300 33239953 ~ 33249208 (+)

Expression


Co-expression Network