LOC110486108 (LOC106607428)


Basic Information

Item Value
gene id LOC110486108
gene name LOC106607428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31240900 ~ 31243127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557469.2
TCCTGTAGATGGAACCATGTGTCTttgttgtgtgcatgtttgtaCAAAGAACTCGAGGCACACATTGTTATATTTAACAAACTAAATATTTGACAGCTCGTTGAAAGTAATATATACAGTTATCAGCATATTTTAGTTGTATATATACTTTTGCCAAAATGTCGACAGCTTTTTGTTTTCAAGCACAGCTCGTTTCGGTCATGGACGCGTTATCAAAAACAGCTGTTTCAGAAATAAGCAAACTGGTCGACATCGAATCAAAGGTTTTAAAATTAGAAATAACGCGTGGTCAGAATGAAATAGCAGCACTTACAGAGAAACTGCAGTTGATGGAGAATTTGCTTTGGATCGACCGCGGGCACAGGCAGCACGCAACCGCAGATACACGCACGAAAACACCAACAAGAGTGAGAGACGGTTCAATGAACGATTATTGTGAAATACCTCAGTCTGAGCCCAAAACACCTGCAATCAAAAAAAGTGAGAGTTCCTGGGAAAACATTTGTCCTCCCCAAGAGATGCACGTCATCCATCCGGTTGAAGATAGTGCTCTTGTTTTGGAAACAGTGCCTACCACAGCGGTGAGAGACCAGCCTAAATTGATTGTGATCAAGGAGGAACCTTCAGAGGTGGACATATGGGGTAGTGGGCCAAAGACTGAACTCATAAATGAAAAGGGAGCAGCAACATCACTTGATACAGATGTTGGGTGTCTTGATGTGCATTGTCCAGACGGCTCAGACAAACACGCTATGCTTACTGAGAGCCAAGTGAACCACAGCACTCCGCCCTCATCCAGAGTGCAATTGGAGGACCTGGACACACATTGGATGCCGCCTGCATGTTCACAGAGCCAGGATGCACAGCAGATCACACCTGCTGCACAGAGAAACTCCATaactggaaacagctctggtggtaTAACAAATGTGCCCTTTCAGAGTTTCAGTGTGGCAAAGTCAAACATGAAGATCCACAGCCTGAGAACGTCAGGAGCTAAAAGATTTGGCTGCATGCAATGTGGCAAGAACTTCAGGTGTTACAGTCAGCTGGAAATACACCAGCGAagtcacactggagagaaaccgtaCCGATGCACGCTGTGTGGAAAGAGATACGCACAGAAAGGGCATCTTTATACCCACCAACGCACCCATACTGGAGAAAAACCATATCGCTGCCTCGACTGTGGCAAGAGCTTCATTCAAAAATGCACTCTCGATATGCACCAGCGCACCCACACTGGAGAAAAACCTTATGTTTGTGTGAAATGTGGGAAGGGATTTACTAAAAACTGTAACCTTAAGAAACACATGGGTGTACATACAGAGTTCAGCATGCATGTTTACAGTGAGTCCAGTTTTCAAGAGGACAGATGGTAAAATAGACCATCAGTACTAGTACCAACCAACCAGCCTCTGCAGTGGATTTGATGGACTTCAGTCATTAAAAGTTTTCCTCATAGAATAGAAGTTTTTGCTTTTCAGAAAAATAAAGGTGTCCCTTTTTCAACA

Function

NR:

description
zinc finger protein 572-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557469.2 True 1514 mRNA 0.44 4 31240900 31243127

Neighbor

gene id symbol gene type direction distance location
LOC110486104 chchd5 coding upstream 121219 31113781 ~ 31119681 (+)
LOC110485141 LOC106600922 coding upstream 278581 30904798 ~ 30962319 (+)
LOC110486099 NA coding upstream 388296 30850580 ~ 30852604 (+)
LOC110486087 LOC106584892 coding upstream 642197 30579918 ~ 30598703 (+)
LOC118938065 LOC106564780 coding upstream 688247 30523932 ~ 30552653 (+)
LOC110486110 LOC106607429 coding downstream 738 31243865 ~ 31250082 (+)
LOC110486114 NA coding downstream 24695 31267822 ~ 31270431 (+)
LOC110486119 LOC106600898 coding downstream 165999 31409126 ~ 31442138 (+)
LOC110486123 LOC106607440 coding downstream 246690 31489817 ~ 31513332 (+)
LOC110486128 LOC106607447 coding downstream 399255 31642382 ~ 31649841 (+)
G1163962 NA non-coding upstream 92234 31148280 ~ 31148666 (+)
G1163854 NA non-coding upstream 155569 30985962 ~ 31085331 (+)
G1163914 NA non-coding upstream 164389 31075458 ~ 31076511 (+)
G1163814 NA non-coding upstream 342268 30898145 ~ 30898632 (+)
G1164069 NA non-coding downstream 85625 31328752 ~ 31338410 (+)
G1164055 NA non-coding downstream 87930 31331057 ~ 31335655 (+)
G1164076 NA non-coding downstream 112068 31355195 ~ 31357298 (+)
G1164119 NA non-coding downstream 194178 31437305 ~ 31496657 (+)
G1164096 NA non-coding downstream 200147 31443274 ~ 31444634 (+)
G1162753 NA other upstream 1409604 29830754 ~ 29831296 (+)
G1162364 NA other upstream 1745998 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 1869953 29266618 ~ 29370947 (+)
G1161908 NA other upstream 1941244 29298758 ~ 29299656 (+)
LOC110486134 LOC106600876 other downstream 758624 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 1472129 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 1985986 33001356 ~ 33230495 (+)
G1166318 NA other downstream 1996826 33239953 ~ 33249208 (+)
G1166779 NA other downstream 2547513 33790640 ~ 33803665 (+)

Expression


Co-expression Network