LOC110486131 (LOC105029658)


Basic Information

Item Value
gene id LOC110486131
gene name LOC105029658
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31684474 ~ 31690205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557502.2
AGACCATGAAAGGTGACCTGCGAAGTGCCTGTAGGATATGTCGAGATAAACAAATTTAGGTCCTCTTTTTTGACTTTAGCGAGCTAACTAGCTGAATGCTATCGTTCAGGTATTCACATATGCGGTAACAGATAAGGAAATCTCTCAATCAGTTTATTTATGTCAGGGGAACTAACTTGGTCGAATTACTAGCACGAAAGTATCGTCATTACTAAGCAGCTTTAGCTAGTTTTGATAGTAAAAAAAATAGGCGACCCAGCTCATTGTTTTTAGCTAGCTTAACGTTAGCTTTGACAAACACCAACAAGCGAACTCCATCTAGCCAGTATCAATTGAATTATAAGGACTGTGTTAATGAGTAGACATGTCTGGTATCGCTCTTAGCAGACTGTCACAGGAGCGCAAAGCATGGAGGAAAGACCACCCATTTggttTTGTCGCTGTGCCTACCAAAAATCCTGATGGCACTATGAACCTCATGAACTGGGAATGTGCCATTCCGGGGAAGAAGGGGACGCTGTGGGAGGGAGGCCAATACAAACTCCGAATGCTGTTCAAGGATGATTATCCTTCCTCGCCGCCAAAATGCAAGTTTGAGCCACCCATTTTCCACCCCAATGTCTACCCATCTGGCACGGTGTGTCTTTCCAtcctggaggaggagaaggactgGAGGCCAGCCATCACCAtaaaacagATCCTGTTGGGTATCCAAGAGCTTCTCAATGAACCCAACATCCAAGACCCAGCACAAGCAGAAGCCTACACAATTTACTGTCAGAACAGAATGGACTATGAGAAGAGGGTGAGGGCGCAGGCCAAGAAGTTTGCCCCCACATAAAGCTCAGCTGAACATCTGCCTGAGAAGCCTGATACAACACCTGGGTACTGAACAGCAAGCAGCACTTAGAGGACCAATCCAATGATCAATCTACAATTTGATATGTTCTTCTTTAAATGAGAAAAGTGTCATGTAGCCTACATGAGAGCcattttaaaacaaaacaaaaaaatcattTGTCCACAATTTTTGTTGTTGCCATTTTCACTTCTAAAACACTTTCTTATAATTTAGTAAGATTCCATTTGGATTCGTGATCTATAAATCAGGAAGCTACTTTGCCTTATATTTAGTCTTATCAAATATTCATAAGGTTTAATAacaaataatttcaaattgcAGTGTCTGATACATCATTTTGTAACTGAATCTGTACTTAAATAAATTACCCCCGTAAGTTAAGTGAGCCTTATTTTTCTGTATGTCTGGTCACATTGATTTTAATTGTAGATTTTTATTGGGATGCCCCTTTAATAAGATGGATGTCAGCGCTGAGAGTGTGCTGCATAGAGAGCTGAAGAGGTTTACCTCCAAAGACTTGAGTGTatgtatataatataaatatgtagGTCCATATGGATCTTATGTTCTTTTCTATTGTTTTAGCAAGTTGATATTTGTCTGTGGTATTAAAAGTAATAAACACATAATGTAAGAATTGTGAAATAAAGTTAATTGAATGGAAAATA

Function

NR:

description
PREDICTED: SUMO-conjugating enzyme UBC9

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019789 SUMO transferase activity molecular_function

KEGG:

id description
K10577 UBE2I, UBC9; ubiquitin-conjugating enzyme E2 I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557502.2 True 1530 mRNA 0.39 7 31684474 31690205
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486130 LOC106607449 coding upstream 10584 31666240 ~ 31673890 (+)
LOC110486128 LOC106607447 coding upstream 34633 31642382 ~ 31649841 (+)
LOC110486123 LOC106607440 coding upstream 172745 31489817 ~ 31513332 (+)
LOC110486119 LOC106600898 coding upstream 242336 31409126 ~ 31442138 (+)
LOC110486114 NA coding upstream 414043 31267822 ~ 31270431 (+)
LOC110487528 tex33 coding downstream 1328 31691533 ~ 31692268 (+)
il2rb2 il2rb2 coding downstream 11759 31701964 ~ 31709740 (+)
LOC110486134 LOC106600876 coding downstream 311536 32001741 ~ 32159164 (+)
LOC110486136 cdc27 coding downstream 578011 32268216 ~ 32289324 (+)
LOC110486139 LOC106607458 coding downstream 600136 32290341 ~ 32370648 (+)
G1164618 NA non-coding upstream 29771 31654315 ~ 31654703 (+)
G1164612 NA non-coding upstream 48615 31635518 ~ 31635859 (+)
G1164604 NA non-coding upstream 61203 31622998 ~ 31623271 (+)
G1164591 NA non-coding upstream 91180 31592211 ~ 31593294 (+)
G1164583 NA non-coding upstream 99966 31583458 ~ 31584508 (+)
G1164620 NA non-coding downstream 27303 31717508 ~ 31807548 (+)
G1164619 NA non-coding downstream 28398 31718603 ~ 31810999 (+)
G1164622 LOC106600878 non-coding downstream 52521 31742726 ~ 31747322 (+)
G1164993 NA non-coding downstream 228543 31918748 ~ 31919040 (+)
G1165223 NA non-coding downstream 463746 32153951 ~ 32154176 (+)
LOC110486104 chchd5 other upstream 564797 31113781 ~ 31119681 (+)
G1162753 NA other upstream 1853178 29830754 ~ 29831296 (+)
G1162364 NA other upstream 2189572 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 2313527 29266618 ~ 29370947 (+)
G1161908 NA other upstream 2384818 29298758 ~ 29299656 (+)
ifn2 ifn2 other downstream 1025051 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 1538908 33001356 ~ 33230495 (+)
G1166318 NA other downstream 1549748 33239953 ~ 33249208 (+)
G1166779 NA other downstream 2100435 33790640 ~ 33803665 (+)

Expression

LOC110486131(LOC105029658) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110486131(LOC105029658) Expression in each Bioproject

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LOC110486131(LOC105029658) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network