LOC110486134 (LOC106600876)


Basic Information

Item Value
gene id LOC110486134
gene name LOC106600876
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32001741 ~ 32159164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940770.1
gagagacacACCGCAAACAAAATATTTCAAATTCTGAAAGCAGTCGGTCGGACTGAGTGAAGTGGAATCGGAGCTGAAACACCCCAAGAGCGATAAAGACTGTGGACCCGCACTGCGTTAAGAGGATACCGGTGTAGTTGTGTCAAACACATCATATTACGCGATTTCTGAAACTGAGCCTGCGAAGCACTCTTCCCTTTTCACTTTTTGGAGCGCAGCGGGCAGCTTTTAATTCATACTATATTTTCCCTCGGAGACAGGAGTGTGGTGTATGTTGCCTAGCAATTACAAGTTAAATGGTATTTTGGAGAAGTCAGCATTAAGAAAATAAATATTGGAGCACCGGACCAGTCGCACATCGGAAAAGCAATACTTGAGAGGACTGTTATGAAGAGGGGTTGAGAAAGGACGATGCAAAGGCTGTCAACGCTTTGAAGTTCGCGAGACCCGACCTCAATCTCTGACCGAATTTCAATCGGCCCACTGAATTAATTATTGGAACCTGTCATGTTCGTTTAATGTACACGGAGAAGAAGAGTTATTTACATGTAGGCTATTATTAAAACCACGCAAAACGCGGTACCCTGGAAAGTCCATTCACTGAAATATATAGCGTTGTAATACAGAAGGAAATAGACTACTGAACTACATAGTACAACCAATATTTCCGAAGAGACGTTTGAATTTCCTCTGAAATGGACTGACACCGATCAAACCAAACGTATCTCGATAAGATAATGATCGACAATTTAGAGGCTTATTGGGACTTCAGAGTTGAGAAAATGCATAATGATAAGTAACTGACTGACAGTTGGTGTTTGATGTGTGCAAGAATCATTCCAAAAGTGGTGTGATATCCTCTCTTGTGATGATTGAGTATCCCTACTCTGGTACCGGAGGCATCTCGTGGTAACACAGTAGCTGCGGCAAGGAAGGAGTGGAGTTTGGAGAAATCAGCAAATAAACGCACAGAAAAAATGTGGCTGCGAATTCTTCCGCAGGTGTTGACCATCTGGGCTGTGGTGATTTCCGGGACAACGGCTGACCTGACCTGCGATACACTGCTACTGCTGTCCACCAATCTCACTGCACGTACGTTGGCACTGTGGAATCTGACCCTCACACCCAGCAATGTCACCGCCGGCCTGTTCTGTAACATGTCCATCGATCCCATCGGTACCTGCTGGCCAAAGAGCACTGCAGGGGAGTGGGTGTTACGGCCATGTCCAGAGATGTTCTATGGCGTCAAATACAACACCACCAACAATGTGTATAGAGAATGCCTTTCCAACGGGTCTTGGGCCGTGAAAGGCAACTACACCCAGTGTCAAGAGATTCTCAAtgagAAAAAGAGCAAGCTGCACTACCACATAGCGGTGATCATAAACTACATGGGACATTGTATCTCTCTGGCAGCCCTACTGGTGGCCTTCATCCTCTTTATGAGGCTGAGGAGTATCCGCTGCTTGAGGAACATCATCCACTGGAACCTGATCACAGCTTTCATCCTGAGGAACGCCACTTGGTTCGTTGTACAGCTCACCATGAACCCTAAGGTGCACGAGAGCAATGTGTTGTGGTGCCGGCTGGTCACGGCAGCCTATAACTATTTCCACGTGACAAACTTCTTCTGGATGTTTGGGGAGGGTTGCTACCTGCATACAGCCATCGTGCTTACCTACTCCACCGACAAGCTACGCAAGTGGATGTTCATCTGCATCGGGTGGTGCATCCCTCTTCCAATCATCATTGCATGGGCCATTGGCAAGCTTTACTACGACAACGAAAAGTGCTGGTTTGGGAAGAAGGCAGGAGTGTACACAGATTACATCTACCAGGGCCCAATGATCCTGGTGTTGCTGATCAACTTCATATTCCTCTTCAACATTGTGAGAATCCTCATGACCAAGCTGAGAGCCTCCACCACCTCAGAGACAATACAGTACAGGAAAGCGGTGAAGGCCACTCTggtgctgctgcctctcctgggCATCACCTACATGCTATTTTTTGTCAACCCCGGAGGGGAGGATGAGGTCGCCCAAATAGTCTTCATCTACTTCAACTCCATTCTGGAGTCTTTTCAGGGCTTTTTCGTGTCAGTGTTTTACTGCTTCCTGAACAGCGAGGTGCGTTCTGCGGTTAGGAAGAGATGGCACCGCTGGCAGGACAAGCATTCAATCAGGGCTCGAGTGGCGCGCGCCATGTCCATCCCCACGTCCCCCACAAGGGTCAGCTTCCACAGCATCAAGCAGTCATCAGCTGTTTGAGGACCAACAAAACTCTGCTTTGGCTGAAAGCCCCCGTCTAACCTCTCACCGCCAACCACCCCTCCAACATGTCCACCACAGCAGAGCatctctttcccctcttctctccaaaCCAACCGAGGGAAACAGCTACCGCACCGTGATGGTTCACACAGGGTACACTTGGTCTGTAATACAAACCTCACAGACCCCCTCCCAGGGGAGCGGTGACCTCTTTAGTCTCTCGCCTGCTGATATATTGAGGTACGTTCGCTCAGTGCGTTCCCTCCGAAAGCTACGGAGGCTCATGATTATAATGGCCAAACAAAGTAATATCAGGAGCTGACTTTTTGCCAAAAGGCAGCACAGGGTATTGGTACAATCCCTGTGGCGTTGGCAGATTCAGTTGAGAGGTGACGTTTGATGACAGATCTATTTTTTTCACCTGTTCGTCAGTATATTTAGTGTTCTCTTATAGTTTTTTTATTCTGCAAAATCCAGAAGTTGGTCCATATGGATGGAGTTGGAGTCCATAACAAGACTTTGGGGCACGTGCTTGTATCAGTGTCAAATACATGATCCCTGTTGGACTGACCTGTTCAAGATCATAGACACAACCATTTGATTCTTGTTCCTTTGCATGTTTTTATTTTCTGTAGAAACATTTCTGAACTTTGAGTTGGCTATGCTTGCTGGCGCTGCAAAGGGAATGACTGCCATGGACCATTCATTTCAGGTCTGTCCAGACTACTGTCTCTAGAAAACATTCTCCCTTTCCTTCCAGCTGTTTTTCTGATGGATCTTCATGGAGACCCTGTTCCGATGTGAAATATTTGGCCTCCATTGAAGATGGATGCCTTTCCCATTATCCGTACAGCAACAACCAAGGCATTGTGCAAGCGGAAAAAGGGGACATGACGTTATCCAACACTGTTGCTAATGTGAAGGAACTGTGAAAATTGGTACCCACCTGTCAAAGTAATGTTCTGTTGAGTGAGGTTGTAAAAGGTGTTAATTTTCAACTGGATAAGCACTCCTTTATGAAagcacttttatttatttcaaattcCAAAATTACCAGCACCGTAGTAAGACACCGTCCACTTTAGCATAGCATTGTTAAAAGCCAGATTGGGAGAAAtgccaattattttatttttttaaagaattggGCTAGATATGTTAAGGTCTGAGAGGAACGTGGATGCTTTGGTTGATTCATCTCTACAACTTGCGTATCTTATCTGTACTAAATCCAGTGGGTACTGGTAATACGTTTTCCTTTCATCTTGAGCCATCCATTATGAAGGACCATAAAAAAATCTGATCCTCATTCCAACTCATTCCAGAACATAAAACCATAACAGATATTGTCATGCACATAGCACaactttatttttttaattacacATTCATAAGTCAAAGTAACTAGGAAAAGATGAACACAAGGTCTGGAAGATGATTGAGTGAATGCTGACTTCTTGTGGTTTGTTCTGACAAAGGGGAATAGCGGTGATGCATATTCAGATAGACATTATCTAGACAGGACCAGTCTCAAATGTATTGCAGTAGGATTCACCTCTGAAAAATATTGTGGGAGCCCTCCCAAAAAGCTTGTGAACTTGAAGCTTCAATCTCAGGGCTCAGAGAACCAGTTGACTTCCACACACAACCCCACACAGCACAGGATGAAACCAATTAAGACCAAAGTGTTACTTTGGAGTGCTAACTGATattaaaaacaccaaaataaacaAACTATTTGACACATAAACATCATGCTGACAACTCATCGAAATCCAAAATGACGCACCCTGTCACAAGACGCTATGATTATTTTGCAAAGTCATAAACAAAGCCAAAGCCTCCGTTGCCAGATATGTCtataggcaacaacaaaaaattggtTGATCTGAATCCTTTTTTCCCTCCCAGACCCTTTTGATCATTGGCATAAAGCAGTCAGAATAAAATGTGTGATTTCATTGGCAATGTTGTTTACAGATCGCTTTCAGTGATAGTTATAAAACGTATTGTCAGACAGATGTATCCTATTCGCTGAAACGAATGATCACAAGAATCACAGACGCGGCTTCATCTATGTCTGCCAGTCACCTGTGGGCTCTGCTTTGTTTCCCAGTCAGGGATGCTACAGTCATCTAACACACACCATGTACTCCTAAACAGCCAGGATACATAAGGTTATTACATGCATTAGATTGGATGTTAGTCTGGAATGGAATTGCCAATGTATGATAGTGTTATGCATTCCAATTCCAGGTATCTGCCTCTGTCATGAAACTATGTTACCTCATACCAAAATGATTTACCCTGGAATTCAAAAGCCAGTTGGTTCTCTGTTATAATGTTACAAGGACCCTGTTCTACATCACTGTTTCCAGATTTTGGGGACTTGTACTCCAAACACAATGTAATTCTATTCTGAACACATATTCCAGTTATCATAACCAGATGCTTTTGAAAACCTTTTCAATCAAATGCAGTATTTCAGTATTATGTAGAAAATTGACTTTTTGGCTATTTTCCTTCCTTTTCCAGGAAACAGGAATATTTTCCTTATTATTATAGGTGTCTCTCAAAGTGTCGTAGTCAGCATACTTCTCTAATATAGTAATTACATTGAAAATGGCTCTCATTATCCAGTATACAGTACACAGACGGCTTCATAATGAATTCCAGTTATTTGCACAAATATTAGTGTAGTCAGCTGTCATACCACTGACTGTCAGCAACATCGGTGTGATCAaatgttttcttgtttttctttgcCATTCCCTAAATAGTTTGTGGTCACAAACATCCTCCAAAGACACAAGCGCAGCTATCTAGTCAATAGGCTGTTcttatttcttcatttcaataagAAATGCTGCTACCCTTTCTCTTTTttgattgtttgttttgtttgatttgttttcctTAATTGTGCAGAGGGGTCTTGTCCGATTGCTCTCGATGCAGTTATAGTTACTATAACAACGATGTAAGTAAGTGTTCCTTCTCGGGTATGTACGTTGTGTTTTGTCTTTTGTGAAGGTCTAAGAAGCgaaaacatttgtatttatttaaatgtcaCAGAATTGTATATTTATCACATGATTTAAAGGGTACAGCTTTTGTTGAAGGACACAGGCCAACATTACCTATAAACGTAGATTGATAAATACATCTAATTACATCCATAATGTGTCTACTTAAGATTTTGTAATGATGAAAGGTAGGTTGATGTCattttttcacttttgtttgttaTGTTTGATAATGTTGCAATTTCAATGTCCAAGAAGGAACAATTATATTTATTATGTTTATGAATCTACTTGTTCAATGTTGGAAAGCGTTGAGGAATTGTACAGAgtttgtaaaataaaataaaatacatagcAATCTAATAAGAGAAATGTGGCGAGAGTTCAAAATATATGGAACAGTGCTACTACATAAATTGTgcattaaaatgtgtttttttaacaaaccaaaaaattctgtccattcctctcttcCATGTAACATAACTTCTCACTGAAATCATTGTGCAATAACATTTTACATAATTTTACATTTTTCACTTCAGAAAAGATACAGCAAGTTATTCTGAGTGACAATGAATGAGTGATACCACACAGTGTAATGTCATTCAATAGAATATACTTGACACGAGTGAGACGTTTCACAGATTCTTGTa
>TU1328699
CCGCAAACAAAATATTTCAAATTCTGAAAGCAGTCGGTCGGACTGAGTGAAGTGGAATCGGAGCTGAAACACCCCAAGAGCGATAAAGACTGTGGACCCGCACTGCGTTAAGAGGATACCGGTGTAGTTGTGTCAAACACATCATATTACGCGATTTCTGAAACTGAGCCTGCGAAGCACTCTTCCCTTTTCACTTTTTGGAGCGCAGCGGGCAGCTTTTAATTCATACTATATTTTCCCTCGGAGACAGGAGTGTGGTGTATGTTGCCTAGCAATTACAAGTTAAATGGTATTTTGGAGAAGTCAGCATTAAGAAAATAAATATTGGAGCACCGGACCAGTCGCACATCGGAAAAGCAATACTTGAGAGGACTGTTATGAAGAGGGGTTGAGAAAGGACGATGCAAAGGCTGTCAACGCTTTGAAGTTCGCGAGACCCGACCTCAATCTCTGACCGAATTTCAATCGGCCCACTGAATTAATTATTGGAACCTGTCATGTTCGTTTAATGTACACGGAGAAGAAGAGTTATTTACATGTAGGCTATTATTAAAACCACGCAAAACGCGGTACCCTGGAAAGTCCATTCACTGAAATATATAGCGTTGTAATACAGAAGGAAATAGACTACTGAACTACATAGTACAACCAATATTTCCGAAGAGACGTTTGAATTTCCTCTGAAATGGACTGACACCGATCAAACCAAACGTATCTCGATAAGATAATGATCGACAATTTAGAGGCTTATTGGGACTTCAGAGTTGAGAAAATGCATAATGATAAGTAACTGACTGACAGTTGGTGTTTGATGTGTGCAAGAATCATTCCAAAAGTGGTGTGATATCCTCTCTTGTGATGATTGAGTATCCCTACTCTGGTACCGGAGGCATCTCGTGGTAACACAGTAGCTGCGGCAAGGAAGGAGTGGAGTTTGGAGAAATCAGCAAATAAACGCACAGAAAAAATGTGGCTGCGAATTCTTCCGCAGGTGTTGACCATCTGGGCTGTGGTGATTTCCGGGACAACGGCTGACCTGACCTGCGATACACTGCTACTGCTGTCCACCAATCTCACTGCACGTACGTTGGCACTGTGGAATCTGACCCTCACACCCAGCAATGTCACCGCCGGCCTGTTCTGTAACATGTCCATCGATCCCATCGGTACCTGCTGGCCAAAGAGCACTGCAGGGGAGTGGGTGTTACGGCCATGTCCAGAGATGTTCTATGGCGTCAAATACAACACCACCAAAAAAGAGCAAGCTGCACTACCACATAGCGGTGATCATAAACTACATGGGACATTGTATCTCTCT
>TU1328698
TCAGTGTCAAATACATGATCCCTGTTGGACTGACCTGTTCAAGATCATAGACACAACCATTTGATTCTTGTTCCTTTGCATGTTTTTATTTTCTGTAGAAACATTTCTGAACTTTGAGTTGGCTATGCTTGCTGGCGCTGCAAAGGGAATGACTGCCATGGACCATTCATTTCAGGTCTGTCCAGACTACTGTCTCTAGAAAACATTCTCCCTTTCCTTCCAGCTGTTTTTCTGATGGATCTTCATGGAGACCCTGTTCCGATGTGAAATATTTGGCCTCCATTGAAGATGGATGCCTTTCCCATTATCCGTACAGCAACAACCAAGGCATTGTGCAAGCGGAAAAAGGGGACATGACGTTATCCAACACTGTTGCTAATGTGAAGGAACTGTGAAAATTGGTACCCACCTGTCAAAGTAATGTTCTGTTGAGTGAGGTTGTAAAAGGTGTTAATTTTCAACTGGATAAGCACTCCTTTATGAAagcacttttatttatttcaaattcCAAAATTACCAGCACCGTAGTAAGACACCGTCCACTTTAGCATAGCATTGTTAAAAGCCAGATTGGGAGAAAtgccaattattttatttttttaaagaattggGCTAGATATGTTAAGGTCTGAGAGGAACGTGGATGCTTTGGTTGATTCATCTCTACAACTTGCGTATCTTATCTGTACTAAATCCAGTGGGTACTGGTAATACGTTTTCCTTTCATCTTGAGCCATCCATTATGAAGGACCATAAAAAAATCTGATCCTCATTCCAACTCATTCCAGAACATAAAACCATAACAGATATTGTCATGCACATAGCACaactttatttttttaattacacATTCATAAGTCAAAGTAACTAGGAAAAGATGAACACAAGGTCTGGAAGATGATTGAGTGAATGCTGACTTCTTGTGGTTTGTTCTGACAAAGGGGAATAGCGGTGATGCATATTCAGATAGACATTATCTAGACAGGACCAGTCTCAAATGTATTGCAGTAGGATTCACCTCTGAAAAATATTGTGGGAGCCCTCCCAAAAAGCTTGTGAACTTGAAGCTTCAATCTCAGGGCTCAGAGAACCAGTTGACTTCCACACACAACCCCACACAGCACAGGATGAAACCAATTAAGACCAAAGTGTTACTTTGGAGTGCTAACTGATattaaaaacaccaaaataaacaAACTATTTGACACATAAACATCATGCTGACAACTCATCGAAATCCAAAATGACGCACCCTGTCACAAGACGCTATGATTATTTTGCAAAGTCATAAACAAAGCCAAAGCCTCCGTTGCCAGATATGTCtataggcaacaacaaaaaattggtTGATCTGAATCCTTTTTTCCCTCCCAGACCCTTTTGATCATTGGCATAAAGCAGTCAGAATAAAATGTGTGATTTCATTGGCAATGTTGTTTACAGATCGCTTTCAGTGATAGTTATAAAACGTATTGTCAGACAGATGTATCCTATTCGCTGAAACGAATGATCACAAGAATCACAGACGCGGCTTCATCTATGTCTGCCAGTCACCTGTGGGCTCTGCTTTGTTTCCCAGTCAGGGATGCTACAGTCATCTAACACACACCATGTACTCCTAAACAGCCAGGATACATAAGGTTATTACATGCATTAGATTGGATGTTAGTCTGGAATGGAATTGCCAATGTATGATAGTGTTATGCATTCCAATTCCAGGTATCTGCCTCTGTCATGAAACTATGTTACCTCATACCAAAATGATTTACCCTGGAATTCAAAAGCCAGTTGGTTCTCTGTTATAATGTTACAAGGACCCTGTTCTACATCACTGTTTCCAGATTTTGGGGACTTGTACTCCAAACACAATGTAATTCTATTCTGAACACATATTCCAGTTATCATAACCAGATGCTTTTGAAAACCTTTTCAATCAAATGCAGTATTTCAGTATTATGTAGAAAATTGACTTTTTGGCTATTTTCCTTCCTTTTCCAGGAAACAGGAATATTTTCCTTATTATTATAGGTGTCTCTCAAAGTGTCGTAGTCAGCATACTTCTCTAATATAGTAATTACATTGAAAATGGCTCTCATTATCCAGTATACAGTACACAGACGGCTTCATAATGAATTCCAGTTATTTGCACAAATATTAGTGTAGTCAGCTGTCATACCACTGACTGTCAGCAACATCGGTGTGATCAaatgttttcttgttTCACAAACATCCTCCAAAGACACAAGCGCAGCTATCTAGTCAATAGGCTGTTcttatttcttcatttcaataagAAATGCTGCTACCCTTTCTCTTTTttgattgtttgttttgtttgatttgttttcctTAATTGTGCAGAGGGGTCTTGTCCGATTGCTCTCGATGCAGTTATAGTTACTATAACAACGATGTAAGTAAGTGTTCCTTCTCGGGTATGTACGTTGTGTTTTGTCTTTTGTGAAGGTCTAAGAAGCgaaaacatttgtatttatttaaatgtcaCAGAATTGTATATTTATCACATGATTTAAAGGGTACAGCTTTTGTTGAAGGACACAGGCCAACATTACCTATAAACGTAGATTGATAAATACATCTAATTACATCCATAATGTGTCTACTTAAGATTTTGTAATGATGAAAGGTAGGTTGATGTCattttttcacttttgtttgttaTGTTTGATAATGTTGCAATTTCAATGTCCAAGAAGGAACAATTATATTTATTATGTTTATGAATCTACTTGTTCAATGTTGGAAAGCGTTGAGGAATTGTACAGAgtttgtaaaataaaataaaatacatagcAATCTAATAAGAGAAATGTGGCGAGAGTTCAAAATATATGGAACAGTGCTACTACATAAATTGTgcattaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940770.1 False 5955 mRNA 0.42 14 32001741 32159164
TU1328699 False 1318 TUCP 0.45 5 32001751 32110733
TU1328698 True 2888 lncRNA 0.37 2 32156020 32158937

Neighbor

gene id symbol gene type direction distance location
il2rb2 il2rb2 coding upstream 292001 31701964 ~ 31709740 (+)
LOC110487528 tex33 coding upstream 309473 31691533 ~ 31692268 (+)
LOC110486131 LOC105029658 coding upstream 311536 31684474 ~ 31690205 (+)
LOC110486130 LOC106607449 coding upstream 327851 31666240 ~ 31673890 (+)
LOC110486128 LOC106607447 coding upstream 351900 31642382 ~ 31649841 (+)
LOC110486136 cdc27 coding downstream 109052 32268216 ~ 32289324 (+)
LOC110486139 LOC106607458 coding downstream 131177 32290341 ~ 32370648 (+)
LOC100136790 scn4aa coding downstream 303047 32462211 ~ 32505925 (+)
LOC118938569 NA coding downstream 323374 32482538 ~ 32482591 (+)
gh2 gh2 coding downstream 366073 32525237 ~ 32528851 (+)
G1164993 NA non-coding upstream 82701 31918748 ~ 31919040 (+)
G1164619 NA non-coding upstream 190742 31718603 ~ 31810999 (+)
G1164620 NA non-coding upstream 194193 31717508 ~ 31807548 (+)
G1164622 LOC106600878 non-coding upstream 254419 31742726 ~ 31747322 (+)
G1164618 NA non-coding upstream 347038 31654315 ~ 31654703 (+)
G1165325 NA non-coding downstream 1130 32160294 ~ 32161004 (+)
G1165355 NA non-coding downstream 23569 32182733 ~ 32184968 (+)
G1165356 NA non-coding downstream 26314 32185478 ~ 32236850 (+)
G1165411 NA non-coding downstream 92142 32251306 ~ 32251520 (+)
G1165418 NA non-coding downstream 104099 32263263 ~ 32263859 (+)
LOC110486104 chchd5 other upstream 882064 31113781 ~ 31119681 (+)
G1162753 NA other upstream 2170445 29830754 ~ 29831296 (+)
G1162364 NA other upstream 2506839 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 2630794 29266618 ~ 29370947 (+)
G1161908 NA other upstream 2702085 29298758 ~ 29299656 (+)
ifn2 ifn2 other downstream 556092 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 1069949 33001356 ~ 33230495 (+)
G1166318 NA other downstream 1080789 33239953 ~ 33249208 (+)
G1166779 NA other downstream 1631476 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 2522024 34680909 ~ 34687670 (+)
G1165223 NA non-coding upstream 1844 32153951 ~ 32154176 (+)
LOC110486134 LOC106600876 other upstream 45287 32001741 ~ 32159164 (+)

Expression


Co-expression Network