ifn2 (ifn2)


Basic Information

Item Value
gene id ifn2
gene name ifn2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32714937 ~ 32722676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556157.2
GGCTTTGACGTCTCCAAATTACTTTTCAGTTGTATCGCAACAGCAGAGGACTGCGGAACAGTATTTCGGACTACCTTTGAAAGAAACCCACTAAATTTATGTATTATATGTCCAGAGTTCTTAAAGAACTGTGGGTTTTATTTCGACTTCGACGATTTTGTTATCAGCCTTTTTAAAAATCGTTCACGCGAAGTTATTAGCAGTTGAAAGCAATGCTCGCGAATAGCTTATTCTCGCTAATAGCCTAGCCGATATGTACATTTAATAATCTTATATTTTGGTTCAACTATAATTCAAAGCTGATTTCAAGGAGAATGTGTATAGATTTGTTGGTCCAGAAGACGGAGGAGGCATGCAATTCTTATTGCTGCATGTTGTAGTCTGGAAAATGAAAGTCCCCGCCTCCGTATGCAGAGTGTGTGTCATTGCTGTGACTGGATCCAACACCACTTCGGTCACTTAAGCGCAGAATACCTTTCCCAGCTGGAGCAGATGGGAGGAGATATCACAAAGCAGAATGCCCCTGTCCTTTTCCCAACATCACTTTACAGACACATATATGATGCAGAGTTTGAGGACAAAGTCAGATTCCTGAACGAGACCATCTATCAAATCATAAAACTGTTTGATGGGAATAGGAATAGGAAGTCAGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTCGATCGCCAATTTGAGAACCTTAGTTCCTGTGTATCACCTGTCGTGAAACCTGAGAAGAGACTGAAACGGTACTTCAGGAATTTGAATAGAAAAGTTCTGAGAAAAATGAACTACAGTGCAGAGGCGTGGGAGCTCATCAGGAAAGAGACAAAACGTCATCTGCAAAGATTGGATATCCTTGTGGGACAGATCTCACTTAGGACAGATCTCACATCTCACTTACCAGTTTATAAAGCATGAATACAATCATGTAGGACCCTGTTAgtttatttattatatttaaatatgtaaattattgttttttattttcataaattattatttatattttgtatTTCCCTTTTGTACCTGTATTGAACTGAAACGTATTGCCTGTGTACTTTGAAAATCAATGAAAAAATAATATTGAAATTGtgaataaaaatgtattgtgt
>NM_001160505.1
AAAGCTAAAAGCAAAATAAACAGCTCTTTACAATGTGTACAATGCAGAGTTGGACGTGTCTTTTTCTTATTCTTTGCAGTATGCAGAGTGTGTGTCATTGCTGTGACTGGATCCAACACCACTTCGGTCACTTAAGCGCAGAATACCTTTCCCAGCTGGAGCAGATGGGAGGAGATATCACAAAGCAGAATGCCCCTGTCCTTTTCCCAACATCACTTTACAGACACATATATGATGCAGAGTTTGAGGACAAAGTCAGATTCCTGAACGAGACCATCTATCAAATCATAAAACTGTTTGATGGGAATAGGAATAGGAAGTCAGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTCGATCGCCAATTTGAGAACCTTAGTTCCTGTGTATCACCTGTCGTGAAACCTGAGAAGAGACTGAAACGGTACTTCAGGAATTTGAATAGAAAAGTTCTGAGAAAAATGAACTACAGTGCAGAGGCGTGGGAGCTCATCAGGAAAGAGACAAAACGTCATCTGCAAAGATTGGATATCCTTGTGGGACAGATCTACTTAGGACAGATCTCACATCTCACTTACCAGTTTATAAAGCATGAATACAATCATGTAGGACCCTGTTAgtttatttattatatttaaatatgtaaattattgttttttattttcataaattattatttatattttgtatTTCCCTTTTGTACCTGTATTGAACTGAAACGTATTGCCTGTGTACTTTGAAAATCAATGAAAAAATAATATTGAAATTGtgaataaaaatgtattgtg
>XM_036939702.1
ATGTGTACAATGCAGAGTTGGACGTGTCTTTTTCTTATTCTTTGCAGTATGCAGAGTGTGTGTCATTGCTGTGACTGGATCCAACACCACTTCGGTCACTTAAGCGCAGAATACCTTTCCCAGCTGGAGCAGATGGGAGGAGATATCACAAAGCAGAATGCCCCTGTCCTTTTCCCAACATCACTTTACAGACACATATATGATGCAGAGTTTGAGGACAAAGTCAGATTCCTGAACGAGACCATCTATCAAATCATAAAACTGTTTGATGGGAATAGGAATAGGAAGTCAGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTCGATCGCCAATTTGAGAACCTTAGTTCCTGTGTATCACCTGTCGTGAAACCTGAGAAGAGACTGAAACGGTACTTCAGGAATTTGAATAGAAAAGTTCTGAGAAAAATGAACTACAGTGCAGAGGCGTGGGAGCTCATCAGGAAAGAGACAAAACGTCATCTGCAAAGATTGGATATCCTTGTGGGACAGATCTCACTTAGGACAGATCTCACATCTCACTTACCAGTTTATAAAGCATGAATACAATCATGTAGGACCCTGTTAgtttatttattatatttaaatatgtaaattattgttttttattttcataaattattatttatattttgtatTTCCCTTTTGTACCTGTATTGAACTGAAACGTATTGCCTGTGTACTTTGAAAATCAATGAAAAAATAATATTGAAATTGtgaataaaaatgtattgtgt
>TU1329495
TATAGATTTGTTGGTCCAGAAGACGGAGGAGGCATGCAATTCTTATTGCTGCATGTTGTAGTCTGGAAAATGAAAGTCCCCGCCTCCGTATGCAGAGTGTGTGTCATTGCTGTGACTGGATCCAACACCACTTCGGTCACTTAAGCGCAGAATACCTTTCCCAGCTGGAGCAGATGGGAGGAGATATCACAAAGCAGAATGCCCCTGTCCTTTTCCCAACATCACTTTACAGACACATATATGATGCAGAGTTTGAGGACAAAGTCAGATTCCTGAACGAGACCATCTATCAAATCATAAAACTGTTTGATGGGAATAGGAATAGGAAGTCAGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTCGATCGCCAATTTGAGAACCTTAGTTCCTGTGTATCACCTGTCGTGAAACCTGAGAAGAGACTGAAACGGTACTTCAGGAATTTGAATAGAAAAGTTCTGAGAAAAATGAACTACAGTGCAGAGGCGTGGGAGCTCATCAGGAAAGAGACAAAACGTCATCTGCAAAGATTGGATATCCTTGTGGGACAGATCTCACTTAGGACAGATCTCACATCTCACT

Function

NR:

description
type I interferon 2 isoform X1

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556157.2 False 1130 mRNA 0.38 6 32714937 32722676
NM_001160505.1 False 800 mRNA 0.37 6 32715439 32722675
XM_036939702.1 False 770 mRNA 0.37 5 32715471 32722676
TU1329495 True 597 TUCP 0.44 6 32715256 32722462

Neighbor

gene id symbol gene type direction distance location
LOC110487530 LOC106595256 coding upstream 148154 32552247 ~ 32566783 (+)
gh2 gh2 coding upstream 186086 32525237 ~ 32528851 (+)
LOC100136790 scn4aa coding upstream 209012 32462211 ~ 32505925 (+)
LOC118938569 NA coding upstream 232346 32482538 ~ 32482591 (+)
LOC110486139 LOC106607458 coding upstream 344289 32290341 ~ 32370648 (+)
LOC118938068 NA coding downstream 97370 32820046 ~ 32824535 (+)
LOC110485150 LOC105907864 coding downstream 102546 32825222 ~ 32826023 (+)
LOC110486141 LOC106607465 coding downstream 103816 32826492 ~ 32843099 (+)
si:dkey-283b1.6 NA coding downstream 120620 32843296 ~ 32845896 (+)
LOC110486146 LOC106607468 coding downstream 278680 33001356 ~ 33230495 (+)
G1165840 NA non-coding upstream 1132 32713241 ~ 32713805 (+)
G1165817 NA non-coding upstream 40751 32665664 ~ 32674186 (+)
G1165814 NA non-coding upstream 42135 32657612 ~ 32672802 (+)
G1165768 NA non-coding upstream 124597 32574851 ~ 32590340 (+)
G1165755 NA non-coding upstream 164480 32550097 ~ 32550457 (+)
G1165885 NA non-coding downstream 65308 32787984 ~ 32788190 (+)
G1165893 NA non-coding downstream 81217 32803893 ~ 32804233 (+)
G1165899 NA non-coding downstream 91942 32814618 ~ 32814867 (+)
G1165902 NA non-coding downstream 96319 32818995 ~ 32819202 (+)
LOC110486134 LOC106600876 other upstream 604204 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 1595260 31113781 ~ 31119681 (+)
G1162753 NA other upstream 2883641 29830754 ~ 29831296 (+)
G1162364 NA other upstream 3220035 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 3343990 29266618 ~ 29370947 (+)
G1166318 NA other downstream 517277 33239953 ~ 33249208 (+)
G1166779 NA other downstream 1067964 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1958512 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 3267180 35989856 ~ 35992600 (+)

Expression


Co-expression Network