LOC110485150 (LOC105907864)


Basic Information

Item Value
gene id LOC110485150
gene name LOC105907864
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32825222 ~ 32826023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110485150
ATGGTCCCTATAAAACACCAGTCTCTGTTGCTACACCTCCCCcagaccctctctttctccctcttgtCTACCTATGAGGCCCCTGAAGACAAGGAGGACATTTTTGCCAGGAGGGCCCATCCTGCCTTCCTTGTGTTTGACAACGCTGCCTACTTGGCTGACATGACCATAGAGCTGCCCTGTCACTGTAAGCCTGAGGAGATCCACTCTGTGGTGCGGTACTACCAGATACAGCTGGGCAGCCCGGACACCAGGGCCCTCACTGACTTCCAGGGCACCTCTGTGGTAGACTCATCCAAAGTGGTCCGGGGAGGGCACCTCCGGAGCAGGTTCTCCATCCGCCTCTTCAGCCTGCTCATCTTCAGGGCCCAGAAGGAAAACTCGGGCCACTGCCTCTATACGGGGGAGAGTAGCAGAGGTGGCACCCCACTCATCCTCTCCTGCCCTGGGGCCAAACCTCAGCACGTGGTAGCCTGGGACCAAGGCTCTAGGACTCTGTCTCCCACTACATGGAGGGCCTGAATGAGACCTCCCGTCTGTTCATAGACACAGGCCACCACCTGCACTGCAGCCCAGCAACACAGGAGGACAGAGGGTCCTGCTGGATCCAGGGGAAGAGGGCTGCTGAGATCAGGCTGGGTGTTTACTACCATCTGGGCTGCAAGCGTCTGCTCTCAGAGTCTCTTATGCCCTGAGGATTATTCTCCTCTACTATGGG

Function

NR:

description
Ig-like V-type domain-containing protein FAM187A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110485150 True 718 mRNA 0.58 2 32825222 32826023

Neighbor

gene id symbol gene type direction distance location
LOC118938068 NA coding upstream 687 32820046 ~ 32824535 (+)
ifn2 ifn2 coding upstream 102546 32714937 ~ 32722676 (+)
LOC110487530 LOC106595256 coding upstream 258439 32552247 ~ 32566783 (+)
gh2 gh2 coding upstream 296371 32525237 ~ 32528851 (+)
LOC100136790 scn4aa coding upstream 319297 32462211 ~ 32505925 (+)
LOC110486141 LOC106607465 coding downstream 469 32826492 ~ 32843099 (+)
si:dkey-283b1.6 NA coding downstream 17273 32843296 ~ 32845896 (+)
LOC110486146 LOC106607468 coding downstream 175333 33001356 ~ 33230495 (+)
LOC110486149 LOC106600856 coding downstream 423209 33249232 ~ 33255122 (+)
LOC110486148 LOC106607470 coding downstream 445056 33271079 ~ 33284807 (+)
G1165902 NA non-coding upstream 6020 32818995 ~ 32819202 (+)
G1165899 NA non-coding upstream 10355 32814618 ~ 32814867 (+)
G1165893 NA non-coding upstream 20989 32803893 ~ 32804233 (+)
G1165885 NA non-coding upstream 37032 32787984 ~ 32788190 (+)
G1165840 NA non-coding upstream 111417 32713241 ~ 32713805 (+)
G1165913 NA non-coding downstream 27234 32853257 ~ 32853636 (+)
G1165914 NA non-coding downstream 27900 32853923 ~ 32858140 (+)
G1166077 NA non-coding downstream 79422 32905445 ~ 32905782 (+)
G1166187 NA non-coding downstream 166925 32992948 ~ 32993307 (+)
LOC110486134 LOC106600876 other upstream 714489 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 1705545 31113781 ~ 31119681 (+)
G1162753 NA other upstream 2993926 29830754 ~ 29831296 (+)
G1162364 NA other upstream 3330320 29494362 ~ 29494902 (+)
G1166318 NA other downstream 413930 33239953 ~ 33249208 (+)
G1166779 NA other downstream 964617 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1855165 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 3163833 35989856 ~ 35992600 (+)

Expression


Co-expression Network