si:dkey-283b1.6


Basic Information

Item Value
gene id si:dkey-283b1.6
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32843296 ~ 32845896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557525.2
TATAAAACTGTCACCTTAACCCTCAGTTCAATAGCACACCCTTTGCCAGATAAGACACACAGACATTACAGTACACATACACTCAGGTCTtctatattcacacacacacacacacacacacagtacccataGGTTCAGGTCCTTATTGATTTCCGTTGAATTCCCAGGTTCACTGAAAGCGGCCTGCTGGCTTTAAGGTTTCTACTGAGGTGTGCGGGTGTTAACGTCACAAGATGCCGATACAAGAGTCTTTTTACTTTTTAGAAATCTTCATCCCGATGATCACATTTGGCATCACCATCATCTGCTGCACAGCCTTTTGTAAGGCCTTCCACCGGGCCCGCCAGGAGCAACTGGACCGGGAGGAGAGACGAGACAGGCCCTCCATCTACGTCATTCCCTTCCCCGCAGTATCTTATGACAGCGAAGACATCCACAGGCCTCCTCGCTACAGCACCTCAGAGTTCTCCAGCCCACCTCCGGCCTACAATGAGGTATTAGTCCATCCTAAACACGAGGTGGAGATGAAGCCAGACTTTATCCACCCAGAGCTTCCTCCAGCCTACTCGGAGGTCTCCAACGCGCCTGTTTTCCCCCTGCAACCTTACTCGGCGTCTCCTGAACCCCACTCCCAACCATAGGACCGTACCAGCTTAGGAAGCCTGCGAGGGGGAGGCCTGAAGCCACAGACTAAGGGATAAATGACACAGAATAtggcacatactgtatgtggagtGGGGATTCTGAAGCTGGATATGTACATGTATACCACAGAGACTTGGTCCTTGGGATTGTTCAATGGGGACGTGAGGTGGAAAGTTTGGAGACCATAAGGAAAAGCAAGTGTTTCGACACCTATGAAAGTGTGTAACTGTAAAGCAGAAGTAGGGGACAAGAGATTGAATGGGGTTGCGTAGTAGCTATAGCTACCAATCTGTACATaccagtgtgtaaatatatatacatctttcaaatgttatttttcaagGTGCCATGGAACTTCTGTAACATGGTAAATAAAGTCTGTTTTCGTTACCAAAGA
>XM_021557527.2
ATAGCACACCCTTTGCCAGATAAGACACACAGACATTACAGTACACATACACTCAGGTCTtctatattcacacacacacacacacacacacagtacccataGGTTCAGGTCCTTATTGATTTCCGTTGAATTCCCAGGTTCACTGAAAGCGGCCTGCTGGCTTTAAGGTTTCTACTGAGGTGTGCGGGTGTTAACGTCACAAGATGCCGATACAAGAGTCTTTTTACTTTTTAGAAATCTTCATCCCGATGATCACATTTGGCATCACCATCATCTGCTGCACAGCCTTTTGTAAGGCCTTCCACCGGGCCCGCCAGGAGCAACTGGACCGGGAGGAGAGACGAGACAGGCCCTCCATCTACGTCATTCCCTTCCCCGCAGTATCTTATGACAGCGAAGACATCCACAGGCCTCCTCGCTACAGCACCTCAGAGTTCTCCAGCCCACCTCCGGCCTACAATGAGGTGGAGATGAAGCCAGACTTTATCCACCCAGAGCTTCCTCCAGCCTACTCGGAGGTCTCCAACGCGCCTGTTTTCCCCCTGCAACCTTACTCGGCGTCTCCTGAACCCCACTCCCAACCATAGGACCGTACCAGCTTAGGAAGCCTGCGAGGGGGAGGCCTGAAGCCACAGACTAAGGGATAAATGACACAGAATAtggcacatactgtatgtggagtGGGGATTCTGAAGCTGGATATGTACATGTATACCACAGAGACTTGGTCCTTGGGATTGTTCAATGGGGACGTGAGGTGGAAAGTTTGGAGACCATAAGGAAAAGCAAGTGTTTCGACACCTATGAAAGTGTGTAACTGTAAAGCAGAAGTAGGGGACAAGAGATTGAATGGGGTTGCGTAGTAGCTATAGCTACCAATCTGTACATaccagtgtgtaaatatatatacatctttcaaatgttatttttcaagGTGCCATGGAACTTCTGTAACATGGTAAATAAAGTCTGTTTTCGTTACCAAAGA

Function

NR:

description
uncharacterized protein LOC110486142 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557525.2 False 1042 mRNA 0.48 4 32843296 32845896
XM_021557527.2 True 988 mRNA 0.48 4 32843326 32845896

Neighbor

gene id symbol gene type direction distance location
LOC110486141 LOC106607465 coding upstream 197 32826492 ~ 32843099 (+)
LOC110485150 LOC105907864 coding upstream 17273 32825222 ~ 32826023 (+)
LOC118938068 NA coding upstream 18761 32820046 ~ 32824535 (+)
ifn2 ifn2 coding upstream 120620 32714937 ~ 32722676 (+)
LOC110487530 LOC106595256 coding upstream 276513 32552247 ~ 32566783 (+)
LOC110486146 LOC106607468 coding downstream 155460 33001356 ~ 33230495 (+)
LOC110486149 LOC106600856 coding downstream 403336 33249232 ~ 33255122 (+)
LOC110486148 LOC106607470 coding downstream 425183 33271079 ~ 33284807 (+)
LOC110485152 LOC106607471 coding downstream 450862 33296758 ~ 33304976 (+)
LOC110486150 psd3 coding downstream 474739 33320635 ~ 33327034 (+)
G1165902 NA non-coding upstream 24094 32818995 ~ 32819202 (+)
G1165899 NA non-coding upstream 28429 32814618 ~ 32814867 (+)
G1165893 NA non-coding upstream 39063 32803893 ~ 32804233 (+)
G1165885 NA non-coding upstream 55106 32787984 ~ 32788190 (+)
G1165913 NA non-coding downstream 7361 32853257 ~ 32853636 (+)
G1165914 NA non-coding downstream 8027 32853923 ~ 32858140 (+)
G1166077 NA non-coding downstream 59549 32905445 ~ 32905782 (+)
G1166187 NA non-coding downstream 147052 32992948 ~ 32993307 (+)
G1166188 NA non-coding downstream 147638 32993534 ~ 32993737 (+)
LOC110486134 LOC106600876 other upstream 732563 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 1723619 31113781 ~ 31119681 (+)
G1162753 NA other upstream 3012000 29830754 ~ 29831296 (+)
G1162364 NA other upstream 3348394 29494362 ~ 29494902 (+)
G1166318 NA other downstream 394057 33239953 ~ 33249208 (+)
G1166779 NA other downstream 944744 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1835292 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 3143960 35989856 ~ 35992600 (+)

Expression


Co-expression Network