LOC110486148 (LOC106607470)


Basic Information

Item Value
gene id LOC110486148
gene name LOC106607470
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33271079 ~ 33284807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557537.2
CACAGGAAACTTGTAGAAGATCACACATTGATCTCTTGTACACGGAGAGAGCTTTGCCAGAGCCTGATAATTTAACTCTCAATTTTGGTTCATCAAAAATTTTGGTTTTGCTCATCAGTTTTAACTCATTTTTAACTTCAAACAGTTGAATCTGGGGTAAATATTGCAACAATTTACTGCAAAGTGTTGGCGATAGTCATACCTGATATTGGAGGACACTACAAGGATCAAGATGGTGACAACTCTACTCTTTGTGGCATTAGCTCATCAAATGGTGTTGTGTTCATTGGCAGCTGGTGAAGAGATCAGGCTGGTCGATGGCACTAGTCGCTGCTCGGGGACAGTAGAGATTCTTTACAAGGGCCAGTGGGGACGAGTGTGTGGCCAGAAGTGGGACGTAAACGATGCCAATGTGGTGTGTGGCCAGCTGGGCTGTGGGAAAGCTGTGAGTGCCCAAGGTAGTGCCCACATAGGTCAGGGTAGTGGTGGCAGGCCTACTTGGCTGGATGATGTTGGGTGTAAAGGCACTGAGAGCTCCCTCACAGAATGCTCACATGGAGGATTGAAACACCATGACTGTTTACAGGCTCAAGATGCCAGAGTTGTCTGCTCAGTTAAACCTAATATCAGACTGGTCAATGGGAGTGACCTCTGCTCTGGGAGGGTGGAGGTCTATCAAACTGGTCACTGGCGAACCGTGTGTGACGACGTGTGGGACTTGAATGATGCTGCTGTGGTTTGCAGACAGCTTGGCTGTGGGAGAGCTGATAGTGCCCCAGAGAGGGCCTACTTTGGTCAGGGCAGTGGGCCCATCTGGCAGGATGATGTTGGCTGCTCTGGCACGGAGTGCTCCATCACACAGTGCCCACACACAGGAGGAGGAACACATAACTGTAATCATGGTAACGACGCAGGTGTTATTTGTTCAGGTGTTGTCTTGCAGAAGCCTTCACTCTCCACAGACCGGTCCTACTCTGCCTTCTTGCATGGAGAGGAGGTCCAGCTCACCTGCACTCTTCCATCCCATATCCTCTGTAATGCTGTGGAGTTCATCTTCTATCTGAATGGAGACTCCGTCATGACTGTGACCGTTGGATCCTCACAGCCCAGGGCTACTTTAACAAAGTTTAAGACGGACGCTTCACACCAGGGCAGTTACAGCTGTCTCTACAGAACACACTCCAACGGCAAAGCCATCAGCTCCCCTTACAGCAACGTTACTAAAGTGATCCTGCTACAGCCCaacatctctctcagtcctccaaaTGGAGGGATGTTCTGGGGACTTCAGGGGCCAGAGGTGACCAGGGGCCACAGCTTCTCCATCATCTGCTCCATTCAGCCACAGTATCCCGGAGGCCTCTTCTATCTGGACTTCTCTGGTTCCAACAGAACAGAGACTACGCCAGCAGTCAACCACTCTGCCTGCTTCCACTTCCCTGTTGCAGAGTATAAAGACCAGGGGAAATACAGCTGCAGCTATGGAGTCAACATCTCCACGTGGTCATTCAGGTCGGCTAATAGTGAACTAGCTGTCACCATTAGAGCCTCTATGGTCCCCATCATTGCCTCTGGAGGGACTGGTGGGCTAGCACTCCTGTTTCTGCTTCTGCTTGTCATCTGTCTAGTCAACAGGAGGACCAGGAGGAGCAGCAAGCCATCTacagagactgaccagagagaatgtattgacaacagacacAACAAAGGCGAGGACGACaaagtagaagaggaggaggactacGTGAATGTTGAAAACGTCTGTGGTGAGAGAAGTCTGGAGAGCGGGAAGGGGGAAAAGAAGAATGGGAAGAAAAAAGGGCGCCGCTCCGGGAACACGGAGGATGTCTGTTTCAACGAGGAGGAGGGTGAAAGGGAGGGAAACGTTTACAGAAAGCGTGTTTGTGGTGGGTCTCGTGAGAAAGTGAATAGTGCAGACGACGCTGAAGACTATGTCTCTGTCTATGACAATGTTGTAGCGCAGGGCGTGAACGAAGACATTTATCAAAACTATTAGGAGGAGTAACAGTGGACTGCGTGTCACTAAAGCAACTCATTGGCATCAACATGTTGATGTGTAAATAAAGTTAAGTAACAATAATTCAGAAGCAATAGTATAGCAACTACGGTTGCTATAGTTGACACTGAAACGAGACATATGACATAATGGTATTGCTCTATTTCATTTAGCTTTTTGTAACCAATCGAAATGTTCAGCATATTTGATCCATTGGGTCAAATCCGAACTGTCGTTTTTTGTATGCGTCGGTGGGGTGCCACTTTCTGTGTCTTTGATCAGTTCCAGTGTTGTTGAGGAACTAGCATTATGTATAAACTGTTGGTTGATTGCACTAAAATAAACAGGAGTCTCATTGCATGCTTTTGAGTTGAACTTTTATGTCTCCACTCCTTCTTTGAAGAGGAGTAGAAGGTGTTCAACCAAGTGAGAAAAGGTCCAACCATAAATAAATAATATGAGCATT

Function

NR:

description
uncharacterized protein LOC110486148

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557537.2 True 2483 mRNA 0.48 8 33271079 33284807

Neighbor

gene id symbol gene type direction distance location
LOC110486149 LOC106600856 coding upstream 15957 33249232 ~ 33255122 (+)
LOC110486146 LOC106607468 coding upstream 40584 33001356 ~ 33230495 (+)
si:dkey-283b1.6 NA coding upstream 425183 32843296 ~ 32845896 (+)
LOC110486141 LOC106607465 coding upstream 427980 32826492 ~ 32843099 (+)
LOC110485150 LOC105907864 coding upstream 445056 32825222 ~ 32826023 (+)
LOC110485152 LOC106607471 coding downstream 11951 33296758 ~ 33304976 (+)
LOC110486150 psd3 coding downstream 35828 33320635 ~ 33327034 (+)
csf-3 csf-3 coding downstream 50640 33335447 ~ 33339727 (+)
LOC110486158 LOC106607478 coding downstream 353002 33637809 ~ 33653835 (+)
LOC110486161 LOC106607482 coding downstream 485632 33770439 ~ 33783009 (+)
G1166318 NA non-coding upstream 21871 33239953 ~ 33249208 (+)
G1166240 NA non-coding upstream 143686 33088583 ~ 33127393 (+)
G1166242 NA non-coding upstream 172586 33097845 ~ 33098493 (+)
G1166239 NA non-coding upstream 183233 33087515 ~ 33087846 (+)
G1166237 NA non-coding upstream 187286 33083571 ~ 33083793 (+)
G1166354 NA non-coding downstream 22712 33307519 ~ 33307823 (+)
G1166357 NA non-coding downstream 28080 33312887 ~ 33313192 (+)
G1166364 NA non-coding downstream 34392 33319199 ~ 33319408 (+)
G1166369 NA non-coding downstream 47602 33332409 ~ 33332663 (+)
ifn2 ifn2 other upstream 548617 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 1160346 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 2151402 31113781 ~ 31119681 (+)
G1166779 NA other downstream 505833 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1396381 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 2705049 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2882821 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2885089 36169896 ~ 36171571 (+)

Expression


Co-expression Network