LOC110485152 (LOC106607471)


Basic Information

Item Value
gene id LOC110485152
gene name LOC106607471
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33296758 ~ 33304976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556219.2
AAGGTTTCCAGCCTCTCAGAAGTCACGATGTGGGTTGACGCGCACAGCAGAGCGCACAGCGCAGCAGTAACCATCTACTGTAGCAGGTGGTGTATGTGTGGTGAGGAGATTTTATGCTTCAACGCTCCTGTGCCTGCGTATGACGGCTTGATATGACAATTTTAAGACAATAATAGGTTACGCTTTGGTAACGGATCAAATTGTCCCTCTTTATATTTACAGTCGTGTTTATTTCAACTAGATCGCGGGGAGCGGAGAGGCAACAACTATCGGAATTGAATGCTGGTAAGCAGGCTCCAGTCCATGGGGTTGTGACGCGGATTCTCCGGCTGCGCTGAATTGCAAGCGGGTACTGTAAACGCATTTGAGATATGGACGCTGTTCTGTGAAGCATGCTGACAAATGTTCTTCTCCCAGACAACAAAAGCTGAAGTGGCCGGCTGGTTGGTGAAGCTGTGACCTATGCAGGGTTGTCTTGGCTGATGGTCCAGGGGCTGTGTCCTTCCAGGAGGGTATGCCTGTATCCCACCATGCCGCTGCTGGCAGAGTGGCTGCTGTGCCACTCCTTGGTGGCATGCCTGTTGCTGCACAGCCTGGCGCTCGGGGCCACCACCGCGGGCCTCCACGGGGCAAACACCGGCTGCTCCGAGAGCTGCTACTGCTCCGAGATGGCCGACGGCGGGAGGGTGGTGCGCTGCAGCAACATGCACCTGGCGGAGGTGCCGCATGACCTGCCCAATGACACTCGCCGACTTTACCTGGACGGTAACCTCCTTACCACCATCCCCGCCGACGCCTTTGCAGGGTTTCCGTTACTCAACGAGCTGGACCTCTCCCACAATGAGCTAACTCAGATGGAGCCGGGGGCCTTTCGGGGTCTGGTCCCCTCTCTCAGGAGCCTGGACCTATCCTCTAACAGACTGACCACCCTGGAGCCCGAGGTCCTGGGGGGCCTGAGGGCCCAGGCCAACCTCACCCACAACCCCTGGCACTGTGACTGCCGCCTCCAGGTGGCTATGCCCCGGCTGGATCTGGAACCGGCCTCACTGGCTGGCGTGGTGTGCCACACTTCGGAGCCCAAGGACGTTGGCATAGATACAGGGGTGCCCTTCATCATGATGGCGGCCGACCTGGACCTGTGCGCAGGGCTCAAGAGGACCACGGACGTGGCCATGCTGGTGACCATGTTCGGCTGGTTCGCCATGGTCATCTCCTACCTGGTGTATTATGTCAGGAACAACCAGGAGGACGCGCGGAGACACCTGGAGTACCTCAAGTCCCTTCCCAGCAAACTGGACAGGCCAGAGGAGTCCTCTAAACTCAGCACAGTGGTGTGAGAAGTAAATTACCAGACCTGGGTCAAAATGCATTTTGTCAGGTACTTTCAAATTCTGGAGAAGTGCCTGATTTAGCTTGATTGCTGTGCAAGGAGGTagagtttgcacttttgggatgaTTCTTAGGCAGTAGGTAAGCTAAATCAAGCGCACCTGTAGTATCTGAAAGTATTTGACATATATTTACCTAGGTCAGGTAGAGACACAGGAAATAACAGCCTAACATGTCAAAGGGATCATAAAAGGAAATGCACAAACTTGGAAATAGACCgggatactactgtactgtacaggttTTCACCAGTAATCCATTGGAAACGCAATACCTCACGGTAACATTTCATTCAAACAAATTCACACTCTTTGATGAATCGTCATTAAATgaagactccccc
>TU1330063
ACCTGGGTCAAAATGCATTTTGTCAGGTACTTTCAAATTCTGGAGAAGTGCCTGATTTAGCTTGATTGCTGTGCAAGGAGGTagagtttgcacttttgggatgaTTCTTAGGCAGTAGGTAAGCTAAATCAAGCGCACCTGTAGTATCTGAAAGTATTTGACATATATTTACCTAGGTCAGGTAGAGACACAGGAAATAACAGCCTAACATGTCAAAGGGATCATAAAAGGAAATGCACAAACTTGGAAATAGACCgggatactactgtactgtacaggttTTCACCAGTAATCCATTGGAAACGCAATACCTCACGGTAACATTTCATTCAAACAAATTCACACTCTTTGATGAATCGTCATTAAATgaagactccccccccccccccccccccccccccacatagcTGTTTGTTATACGAATGAAGGAATTATTTGACACGTTTGTGAATATTCTAAATGTATTTGCAAATCAGTCTGTGTCTTTATGTAAGACACTCTGTATTTGAAAATGATTGAGTTCCAACGAGGTATTGAAATGTTGTCAAATGCATAACTATTTCACAATGGACTGCCGAAGGCACCGTTTTGTTTTTAATCAGGAATGCACGACGTCATCAAATGTCCCCATATTAGTGATGATACTGTGCTTGGCAGTATAACAGAGACTGCATTGTTCGACCAGCATCTGCACTCATTGAATGTTGGATCTTTATTTTCTGGATGAGAAGCCCCATGTAATCATCAAACATTTTCCCAGAAAGAATAAAATCATCAAATGCTCCTTCCTTTTTTATTTTGGCCACAATACCATATTTATTCACAGTTGTATTGTATGTAAATATTTCATTTCACACAAAGTCCGCCTGAACATGTCACCTTTTCATTTATTTTAAATGAACAATGTGTTCATTATATTGAATTATGATATTTGACAGACTGTAGTGCACGATGGCAAAACTAGTTTAGAAATATGAATTGCGCAACTTCAATCAGTGGGTCCAACaagtaattgtaaaaaaaaaaaaaaacttttaaaagaGTTCACTGTCTGAAGTCTCATTTCAATTTCCTCCAAGCCTCATGAATTCCTTTGATCTCACTAACGAGTATGTCTTTTAGAACTATGAATCTGCTTTAGGGACAGACTGCACTGAATATGacttctgtcacacacacacacgacagccACAATGCACACGGTAAAACTCCACACACTCAGGGTGAAATAAAAATGATATAGATTTGATCCTTGCTCACCGTTTGGAAACTGGGCCTGCCGATGGGATCCCCCCTGGCCTCCCACATCATGACGTAGGATGGGAATCAatacagaatggtgttttcctgtcCTACTGGAGCTATTAAAACCCTGCCCCTTGACCCTGGTACAGTATCTAGCCACAGTCTGTCCGCTTTCTGTCTATCTTAAGTGCTCATTTGTGGAGGATGGGAAAATGGgggtagcctctctctctctctctctgtctctctctcctctctcccttgcaTTTATCTGTCATTGTGGAAATTGCAGCTGAGCTCTAATGGCCATGGTGACATACACACCACCAATCTGATACTGAACCCTGAGGGTCAATcatgcacacgcacatgcacacacaaataaATATAGTTGACATAATTATACAGTATAGCCTGTTCAGTCTTAAAAATGTCAGTCATGACACGGATACATTGCCCTACAGACACGGATACACACCTGTGGCTTATTAAATGTTTGGTCACACccgtatatggtctgatataccaccgctttcagccaatcagcatttagggaacaaactacccagtttataaaaGAGTGTATAGCCTACAGCTAAAAACTATCATATTGTTAGTCTGAGGTCTCCTCTTAGCTGAACGTCATTAAACACACTCACTCTCGCTCTCCTGGATGTAAGGCAGGCTTGATAGGTGACATTCAAACAGTGTCCTGGATGTAAGGCAGGCTTGATAGGTGACATTCAAACAGTGTACTGGATGTAAGGCAGGCTTGATAGGTGACATTCAAACAGCGTCCTGGATGTAAGGCAGGCTTGATAGGTGTCATTCAAACAGCGTCCTGGATGTAAGGCAGGCTTGATAGGTGTCATTCAAACAGCGTCCTGGATGTAAGGCAGGCTTGATAGGTGTCATTCAAACAGCGTCCAGGTGtctgagaacatccctgttctCAGACACCACTGTCACTCTGAAACCAGACTCATTGCTCTGCTCCTCAGTTACACTCTGTAGTAAGTGCAAAGGCTTTCTCTCAGGAGAAGGAAACGCAAATCTCTCCCCTTCATTTTTAAATGCTGTGTCCTCTCGGAAATCAAATTGAGGACTCATTTGCGTTGTGTTAGGCGAATAGCTCATACTGCTGAAAGTAGAAGATGGttataggaacacacacactgcttctgAGCTCATATCCAACCCTTTCAGTTACTAAACTTTCTCCTCCCCATGTGTCAGCTGGTTAATTGCAGGTGGAGGGAACAAGTCCTCTCAGTCCATGTCCCTGAATGAGCTTTGGAGTTTCACTGATTACTTCTGCAATGCAACACTCGCTCCATTGTTTACAAAAGGTAGAGAATACGCAGCAGAGAGAATGAAGCTTTGGtttctgtcacgacttctgccggagtcgttgcctctccttgttcgggcggtgctcggcgttcgacgtcaccggtcttctagccatcattgagccatttttcattttccattggttttgtcttgtcttcccacacacctgttttcaatcccattcattacctgttgtgtatttaaccctctgtttcccctcatgtctttgtcagagattgtttattgtcagtgtagtgttgtttgtataggtgcgcgacgggtcttcGTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556219.2 False 1732 mRNA 0.54 2 33296758 33302426
TU1330063 True 2887 lncRNA 0.42 2 33302047 33304976

Neighbor

gene id symbol gene type direction distance location
LOC110486148 LOC106607470 coding upstream 11951 33271079 ~ 33284807 (+)
LOC110486149 LOC106600856 coding upstream 41636 33249232 ~ 33255122 (+)
LOC110486146 LOC106607468 coding upstream 66263 33001356 ~ 33230495 (+)
si:dkey-283b1.6 NA coding upstream 450862 32843296 ~ 32845896 (+)
LOC110486141 LOC106607465 coding upstream 453659 32826492 ~ 32843099 (+)
LOC110486150 psd3 coding downstream 18209 33320635 ~ 33327034 (+)
csf-3 csf-3 coding downstream 33021 33335447 ~ 33339727 (+)
LOC110486158 LOC106607478 coding downstream 335383 33637809 ~ 33653835 (+)
LOC110486161 LOC106607482 coding downstream 468013 33770439 ~ 33783009 (+)
LOC110485153 LOC106607489 coding downstream 916419 34218845 ~ 34221786 (+)
G1166318 NA non-coding upstream 47550 33239953 ~ 33249208 (+)
G1166240 NA non-coding upstream 169365 33088583 ~ 33127393 (+)
G1166242 NA non-coding upstream 198265 33097845 ~ 33098493 (+)
G1166239 NA non-coding upstream 208912 33087515 ~ 33087846 (+)
G1166237 NA non-coding upstream 212965 33083571 ~ 33083793 (+)
G1166354 NA non-coding downstream 5093 33307519 ~ 33307823 (+)
G1166357 NA non-coding downstream 10461 33312887 ~ 33313192 (+)
G1166364 NA non-coding downstream 16773 33319199 ~ 33319408 (+)
G1166369 NA non-coding downstream 29983 33332409 ~ 33332663 (+)
G1166571 NA non-coding downstream 43535 33345961 ~ 33346185 (+)
ifn2 ifn2 other upstream 574296 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 1186025 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 2177081 31113781 ~ 31119681 (+)
G1166779 NA other downstream 488214 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1378762 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 2687430 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2865202 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2867470 36169896 ~ 36171571 (+)

Expression


Co-expression Network