LOC110485153 (LOC106607489)


Basic Information

Item Value
gene id LOC110485153
gene name LOC106607489
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34218845 ~ 34221786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556220.2
TTCCCTCCTTGCGCCCAGGCGGCGCCTTGGCGGATAGACCGTGTCTCTCATTAGCAAAAGATGTCTCGACCAGGGAGATATAAAAgacagaaagaaggagagaaaggaggggggttCAAACCGGGCGACAAAAACAACTCATCCCTTCTTTGTAAACGAACTTGGCTCGAGTCTGCAGACAGTGCGTCAACAAGGCAAGGAGAGACACCAATTTTAGCGTTATCAATTTTGGATGATACAGTGGCGCACGCATtgggaataattacaattttaggCCAACAATTATAAAGGAGTAAACTTGGTTTAAACTTGAAGCCAGGACACATATATCAGAAAAGAAACGGCAATATGCTTGCAGAGGGCAGGGAAACGCCGGTCGCCATAGTGGTTGATAGAAACAGTGGACATGGAGATGAGCCATGCCCGCGCAGCTCAGTCAATTTGATTGACCACAGTCGGCGACACCGAACTGCCTTTACCCGCGAACAACTGTCCCGCCTGGAGCAAGAATACCTCAAGGAGAGCTATGTTTCTCGACCGAGGAGATGCGAACTGGCGACAGCACTGAACCTCCCCGAGACCACAATCAAGGTATGGTTCCAAAACAGGCGAATGAAGGACAAGAGGCAGCGGCACTCTCTCAGCTGGCCACACCCCCTGGACCCCAACCTGTGTGCCCTTATGGTGAGCCAGGCTGCAGCAGGCCTACCTTACCCctttctcccccacctccccctgcACCTCTACTCTCACCTCGGGGTGGGGGCAGGTGCCCCCTCCATTCCCAGCCCCTTCGCTGCACCCCTCAGGCCACTGGATCCCTTGCGCCTCTCACACCCCCCCTACCCCAGGCCGGGTGGTCTACCCCCAACAGCTCTCTACCCCCATTCCAATGTGATGCACAATCCTGCCACTTGCCCCTGCCCCCTCTGCCTCCACTGGGGATCAGACCAACTGTTCAAAGCCAGAGGGCTGACCGCGATTGGCCTGAATCAACCACGCAGTCCCAAAACGATGGCTACCAGTCTGGACAGGAGGGAAGAGGTGCCTTTGCCCAGATGAAGTTTCCTGCAGTAGCTACCAGGAAATTATGATATGAAGTCAATGGTGGTGACAGTACATTGAGCACAATCACACCTCATGATCAGATAAACTGCCCTCCCTGGAGGAGTGCAATTTGATCCAGCTTTCCATGTTGTTGGTGCTCTAGAtttgcatgtgtctgtctgtaataacACAGCTGGGGTTGTTAAtactgttttatttattcatGTGAAATGCAACAACTTTCCAGATTGATGACCTTGAAACATTCCAGCCTAACACTGGGGATGACCTTGaggcaataaaaaaaaaaaggttcccTTCGTCGTAACTGAATTTTCTTTAGCTCCAAAAACGAGAATCTTCATTCTAACTGCCGATTCACTAAAAGGCAGAGAAGATCCATTAGTAGAATGTCCAATTAGACATTGCAAGTGaaacaatatatataaaaatatatatatatcgaaACTTTTCAGTCATAAAAATTCACCTATTTCACTGTTTGCTCTGATAATCAAGTATGAATCTCAACACCTGAGAAATGGCTTTACAGAAACTACTGTTGCTCGTGTGTTTTTCTAATGTTTGCACTATTCTATTATTTTGTCTAGAATTGAAGAGAATGCATACGGTACCAGAATATGTGATGGCGCAATGTGCACATAAGATTTTCTTTTCCACCTTTCGGAATATGTGATGAAATATTTGAGTTAATACATATTTATGAGAAATCTCTTGTTCAATATTTTAAAAGAGCAAATTGTGATTGAATACACTCGTTTGTATCAACAATGACCTATATTACTCTGTCAAGCATAC
>TU1331361
TGATGCACAATCCTGCCACTTGCCCCTGCCCCCTCTGCCTCCACTGGGGATCAGACCAACTGTTCAAAGCCAGAGGGCTGACCGCGATTGGCCTGAATCAACCACGCAGTCCCAAAACGATGGCTACCAGTCTGGACAGGAGGGAAGAGGTGCCTTTGCCCAGATGAAGTTTCCTGCAGTAGCTACCAGGAAATTATGATATGAAGTCAATGGTGGTGACAGTACATTGAGCACAATCACACCTCATGATCAGATAAACTGCCCTCCCTGGAGGAGTGCAATTTGATCCAGCTTTCCATGTTGTTGGTGCTCTAGAtttgcatgtgtctgtctgtaataacACAGCTGGGGTTGTTAAtactgttttatttattcatGTGAAATGCAACAACTTTCCAGATTGATGACCTTGAAACATTCCAGCCTAACACTGGGGATGACCTTGaggcaataaaaaaaaaaaggttcccTTCGTCGTAACTGAATTTTCTTTAGCTCCAAAAACGAGAATCTTCATTCTAACTGCCGATTCACTAAAAGGCAGAGAAGATCCATTAGTAGAATGTCCAATTAGACATTGCAAGTGaaacaatatatataaaaatatatatatatcgaaACTTTTCAGTCATAAAAATTCACCTATTTCACTGTTTGCTCTGATAATCAAGTATGAATCTCAACACCTGAGAAATGGCTTTACAGAAACTACTGTTGCTCGTGTGTTTTTCTAATGTTTGCACTATTCTATTATTTTGTCTAGAATTGAAGAGAATGCATACGGTACCAGAATATGTGATGGCGCAATGTGCACATAAGATTTTCTTTTCC

Function

NR:

description
homeobox protein XHOX-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556220.2 False 1866 mRNA 0.46 3 34218845 34221786
TU1331361 True 831 lncRNA 0.41 1 34220816 34221646

Neighbor

gene id symbol gene type direction distance location
LOC110486161 LOC106607482 coding upstream 435836 33770439 ~ 33783009 (+)
LOC110486158 LOC106607478 coding upstream 565010 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 879118 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 891811 33320635 ~ 33327034 (+)
LOC110485152 LOC106607471 coding upstream 916419 33296758 ~ 33304976 (+)
LOC110486176 LOC106607492 coding downstream 43598 34265384 ~ 34272808 (+)
LOC110486177 LOC106607493 coding downstream 55450 34277236 ~ 34292574 (+)
LOC110486178 LOC106607494 coding downstream 87668 34309454 ~ 34366289 (+)
LOC110486179 LOC106607495 coding downstream 145511 34367297 ~ 34372229 (+)
LOC110486182 LOC106607497 coding downstream 201647 34423433 ~ 34429172 (+)
G1167471 LOC106607488 non-coding upstream 36714 34181488 ~ 34182131 (+)
G1167469 LOC106607488 non-coding upstream 38740 34179535 ~ 34180105 (+)
G1167465 hoxb9ab non-coding upstream 50907 34165433 ~ 34167938 (+)
G1167464 NA non-coding upstream 53909 34164683 ~ 34164936 (+)
G1167428 NA non-coding upstream 70067 34148153 ~ 34148778 (+)
G1167506 NA non-coding downstream 1203 34222989 ~ 34223454 (+)
G1167507 NA non-coding downstream 1786 34223572 ~ 34223775 (+)
G1167508 NA non-coding downstream 2327 34224113 ~ 34224579 (+)
G1167558 NA non-coding downstream 6774 34228560 ~ 34228789 (+)
G1167585 NA non-coding downstream 29666 34251452 ~ 34251713 (+)
G1166779 NA other upstream 415180 33790640 ~ 33803665 (+)
G1166318 NA other upstream 969637 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 988362 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1496383 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2108112 32001741 ~ 32159164 (+)
LOC110486188 LOC107665142 other downstream 459402 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 1768070 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1945842 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1948110 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 2116307 36338066 ~ 36339755 (+)

Expression


Co-expression Network