Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110486176 |
| gene name | LOC106607492 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 34265384 ~ 34272808 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ATP synthase F(0) complex subunit C3, mitochondrial-like |
| id | name | namespace |
|---|---|---|
| GO:0015986 | ATP synthesis coupled proton transport | biological_process |
| GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008289 | lipid binding | molecular_function |
| GO:0015078 | proton transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| K02128 | ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021557592.2 | False | 950 | mRNA | 0.50 | 5 | 34265384 | 34272808 |
| XM_036940839.1 | True | 737 | mRNA | 0.53 | 5 | 34266463 | 34272808 |
34,260,000
34,261,000
34,262,000
34,263,000
34,264,000
34,265,000
34,266,000
34,267,000
34,268,000
34,269,000
34,270,000
34,271,000
34,272,000
34,273,000
34,274,000
34,275,000
34,276,000
34,277,000
34,278,000
34,279,000
NC_048577.1
Loading
Loading
Loading
Loading
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110485153 | LOC106607489 | coding | upstream | 43598 | 34218845 ~ 34221786 (+) |
| LOC110486161 | LOC106607482 | coding | upstream | 482375 | 33770439 ~ 33783009 (+) |
| LOC110486158 | LOC106607478 | coding | upstream | 611549 | 33637809 ~ 33653835 (+) |
| csf-3 | csf-3 | coding | upstream | 925657 | 33335447 ~ 33339727 (+) |
| LOC110486150 | psd3 | coding | upstream | 938350 | 33320635 ~ 33327034 (+) |
| LOC110486177 | LOC106607493 | coding | downstream | 4428 | 34277236 ~ 34292574 (+) |
| LOC110486178 | LOC106607494 | coding | downstream | 36646 | 34309454 ~ 34366289 (+) |
| LOC110486179 | LOC106607495 | coding | downstream | 94489 | 34367297 ~ 34372229 (+) |
| LOC110486182 | LOC106607497 | coding | downstream | 150625 | 34423433 ~ 34429172 (+) |
| LOC110486181 | LOC106607498 | coding | downstream | 156525 | 34429333 ~ 34443615 (+) |
| G1167585 | NA | non-coding | upstream | 13671 | 34251452 ~ 34251713 (+) |
| G1167558 | NA | non-coding | upstream | 36595 | 34228560 ~ 34228789 (+) |
| G1167508 | NA | non-coding | upstream | 40805 | 34224113 ~ 34224579 (+) |
| G1167507 | NA | non-coding | upstream | 41609 | 34223572 ~ 34223775 (+) |
| G1167506 | NA | non-coding | upstream | 41930 | 34222989 ~ 34223454 (+) |
| G1167609 | NA | non-coding | downstream | 1926 | 34274734 ~ 34274961 (+) |
| G1167622 | NA | non-coding | downstream | 29014 | 34301822 ~ 34302111 (+) |
| G1167647 | NA | non-coding | downstream | 100085 | 34372893 ~ 34373228 (+) |
| G1167648 | NA | non-coding | downstream | 100516 | 34373324 ~ 34373867 (+) |
| G1166779 | NA | other | upstream | 461719 | 33790640 ~ 33803665 (+) |
| G1166318 | NA | other | upstream | 1016176 | 33239953 ~ 33249208 (+) |
| LOC110486146 | LOC106607468 | other | upstream | 1034901 | 33001356 ~ 33230495 (+) |
| ifn2 | ifn2 | other | upstream | 1542922 | 32714937 ~ 32722676 (+) |
| LOC110486134 | LOC106600876 | other | upstream | 2154651 | 32001741 ~ 32159164 (+) |
| LOC110486188 | LOC107665142 | other | downstream | 408380 | 34680909 ~ 34687670 (+) |
| G1169121 | LOC106607257 | other | downstream | 1717048 | 35989856 ~ 35992600 (+) |
| G1169207 | NA | other | downstream | 1894820 | 36167628 ~ 36168331 (+) |
| G1169208 | NA | other | downstream | 1897088 | 36169896 ~ 36171571 (+) |
| LOC110486232 | rprml | other | downstream | 2065285 | 36338066 ~ 36339755 (+) |
