LOC110486176 (LOC106607492)


Basic Information

Item Value
gene id LOC110486176
gene name LOC106607492
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34265384 ~ 34272808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557592.2
ATGGTCCAATGGGGAAAGGGAATAGGATTCGAGTCCATTCTTACTATACCTTAGCGTTCGAGTCCCCCAGCCGCCCAAGAATAATGTCAACCAATTGCAATTATTGTAGTTCATTGAAAGCCCCATTATAGGCTAGGTTAAAAGTAGTGACAAGATAAAAAGGAAATCACAGTCGAAGGAGGTTTCCTTTTGTCCAATGGTCGTTTAGGACGTATGCACTAAGCTTATAAATAACAAGGTGACAGTTGTCAGAGTGCACATTGACTGCTGCTGTGAGCTAGTAATCGAGGACCCCGTGTGTACTGTAACATTAAGGCACCAGCCATGTACGCCTGTGCTAAGTTTGTCACCTCACCTGCTGTGCTGCGTGGGGGGTCCAGAGTCCTCGCCCGGCCAGTCTCGGTCTCAGTCTTCAACAGACCTGAAGCCAGAAGTGAGCAGCAGACCCTATTGCCTGTTGGTGAGGCCACTCTTCTAACCCGGGGGTTCCAGACCAGCGCTGTCTCCAGAGACATCGACACGGCTGCCAAGTTCATCGGTGCTGGAGCCGCCACAGTGGGAGTGGCTGGATCAGGGGCTGGAATTGGAACTGTGTTCGGCAGCTTGATCATCGGCTATGCCAGGAACCCCTCCCTGAAGCAGCAGCTCTTCTCCTATGCCATCCTGGGCTTTGCTTTGTCCGAGGCCATGGGGCTCTTCTGTCTCATGGTGGCGTTCCTCATCCTGTTCGCTATGTAATTTAGTCACACCCTGTTCCCATCCCTGCCCCGTCACCTTTCTCCCAGGGAATCGAAGCTCATGAGGCCGTGGCACCGCCATTCCAAACAAAATCTACGACTACAAATCCTGCCTTTTTTATGTTccccttttttctttttttccagaGGTTTTACGTAAGAGCTCACTTTGGTTTAGACGGTCTGTCTGAATAAATGGTTGGGATAACTAAA
>XM_036940839.1
AGTTTAGGTTTCCCCATGGTGAATCCTTCATTTGTATTTTGTGCTAATGTTAACGTTGCCGGCCCAGGGGTGGAATGGCGACGGGGGTGTACTGCGCTAAAAGCACCAGCCATGTACGCCTGTGCTAAGTTTGTCACCTCACCTGCTGTGCTGCGTGGGGGGTCCAGAGTCCTCGCCCGGCCAGTCTCGGTCTCAGTCTTCAACAGACCTGAAGCCAGAAGTGAGCAGCAGACCCTATTGCCTGTTGGTGAGGCCACTCTTCTAACCCGGGGGTTCCAGACCAGCGCTGTCTCCAGAGACATCGACACGGCTGCCAAGTTCATCGGTGCTGGAGCCGCCACAGTGGGAGTGGCTGGATCAGGGGCTGGAATTGGAACTGTGTTCGGCAGCTTGATCATCGGCTATGCCAGGAACCCCTCCCTGAAGCAGCAGCTCTTCTCCTATGCCATCCTGGGCTTTGCTTTGTCCGAGGCCATGGGGCTCTTCTGTCTCATGGTGGCGTTCCTCATCCTGTTCGCTATGTAATTTAGTCACACCCTGTTCCCATCCCTGCCCCGTCACCTTTCTCCCAGGGAATCGAAGCTCATGAGGCCGTGGCACCGCCATTCCAAACAAAATCTACGACTACAAATCCTGCCTTTTTTATGTTccccttttttctttttttccagaGGTTTTACGTAAGAGCTCACTTTGGTTTAGACGGTCTGTCTGAATAAATGGTTGGGATAACTAAA

Function

NR:

description
ATP synthase F(0) complex subunit C3, mitochondrial-like

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557592.2 False 950 mRNA 0.50 5 34265384 34272808
XM_036940839.1 True 737 mRNA 0.53 5 34266463 34272808

Neighbor

gene id symbol gene type direction distance location
LOC110485153 LOC106607489 coding upstream 43598 34218845 ~ 34221786 (+)
LOC110486161 LOC106607482 coding upstream 482375 33770439 ~ 33783009 (+)
LOC110486158 LOC106607478 coding upstream 611549 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 925657 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 938350 33320635 ~ 33327034 (+)
LOC110486177 LOC106607493 coding downstream 4428 34277236 ~ 34292574 (+)
LOC110486178 LOC106607494 coding downstream 36646 34309454 ~ 34366289 (+)
LOC110486179 LOC106607495 coding downstream 94489 34367297 ~ 34372229 (+)
LOC110486182 LOC106607497 coding downstream 150625 34423433 ~ 34429172 (+)
LOC110486181 LOC106607498 coding downstream 156525 34429333 ~ 34443615 (+)
G1167585 NA non-coding upstream 13671 34251452 ~ 34251713 (+)
G1167558 NA non-coding upstream 36595 34228560 ~ 34228789 (+)
G1167508 NA non-coding upstream 40805 34224113 ~ 34224579 (+)
G1167507 NA non-coding upstream 41609 34223572 ~ 34223775 (+)
G1167506 NA non-coding upstream 41930 34222989 ~ 34223454 (+)
G1167609 NA non-coding downstream 1926 34274734 ~ 34274961 (+)
G1167622 NA non-coding downstream 29014 34301822 ~ 34302111 (+)
G1167647 NA non-coding downstream 100085 34372893 ~ 34373228 (+)
G1167648 NA non-coding downstream 100516 34373324 ~ 34373867 (+)
G1166779 NA other upstream 461719 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1016176 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1034901 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1542922 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2154651 32001741 ~ 32159164 (+)
LOC110486188 LOC107665142 other downstream 408380 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 1717048 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1894820 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1897088 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 2065285 36338066 ~ 36339755 (+)

Expression


Co-expression Network