LOC110486177 (LOC106607493)


Basic Information

Item Value
gene id LOC110486177
gene name LOC106607493
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34277236 ~ 34292574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557593.2
GTGGAGAGGACGTGGTTATTGAAAACCGAAGAAAAAAGCTAAGCGATAAACAGGCTGAAACCGCAAACTGTGTTGGTTGACTGGTAAAACTGAGAATGTGACGGGTAATATATTATAGCATGGATTTTTCGACGGACAGTTTGTAAGTTCTTAAGACATAGCTAAACACGATTAGCTACTTTTGGAGGTGAGAAGAAAGGCATACAATGCCGTGGGAGCGCCTTTTGTCATCTTCGGCTCTCCTTGCTCTTCCTCATTTACCGACTGCGTGAGGACGGACTCAAAACAAGAAACTACTGTATCGATAACTGAAGCTAGCTATAACCTGAACACGTGCTAATTTACAATGGCGGATAGCGTAGGAGAGGTTGCTAATGGTGAAATTGGGTTAGGTGTTGGTAGTCAGGGAAATGGAGCTCCGCTGTTACCGAGTTTGGGTAATTCTCTGCCGGGCCACTCGACGAGTGGAGCTAACCCTGCCTCGCCATCCCCAGCAGCGGCTGCGGAGACTGGCCTAGCCGTCATGGCCCCTGGAGCCGCAACTACCTCAACCATGGGGACTGGGAGCGGGTTTGGAGGTGCAGGTGCTCTTAGCGCGGTAGTGGGCTCTGCCATTCCAATACCCACCTACTCGGCCACCAATGCTCTGCCGGGCGGTATCGGTTTGGGGGTGGCCGGAGCGGGCCTCTTGTCCCAGATTCACGCAACGTCCTGGGACCCAACACTAAGTACCGACTGGGACAACGAGAAGACGTCCCAGCAATGCATTCTCCGAATCAAAAGGGATATAATGTCCATCTACAAGGAGCCTCCCCCGGGTATGTTTGTAGTTCCTGACCCTCACGACATGACTAAGATCCATGCCCTCATCACAGGACCCTTCGACACGCCCTACGAGGGAGGCTTCTTCCTCTTTCTGTTCCGCTGCCCCCCGGACTACCCCATCCACCCCCCACGGGTCAAGCTCATCACCACTGGCCAAAACACTGTGCGCTTCAACCCCAACTTTTACCGCAACGGCAAAGTATGCCTCAGCATCCTCGGGACTTGGACAGGGCCAGCATGGAGCCCGGCCCAAAGCATCTCCTCAGTTCTGATCTCCATCCAGTCTCTGATGACTGAGAACCCTTACCACAATGAGCCAGGCTTTGAACAGGAGAGACACCCAGGGGACAGCAAGAACTACAATGAATGCATCCGCCATGAGACCATGCGCGTGGCTGTATGTGACATGCTGGATGGGAAGGTGCCCTGTCCAGAAGCCCTGTGGAGTGTGATGGAGAAATCATTCCTGGAGTACTATGACTTCTACGAGGGGGTCTGCAAAGAGAGACTACACCAACAGGGACAGAACATGCAGGACCCTTTTGGAGAGAAGAGGGGTCGCTTCGATTACCAGGGCCTACTGGCACGCTTGAGTGCCACCCAGAGGCGCATACGGGAGAAGTGCCCACCGGAGGACAACGATGAGCACTCGGACTCGGACACCAGCTCCTCAGGCACAGACCCAGATAGCCAGGGCAGCTCCCAGCCTTAGCCACCAGATGGTGCCACACTACCTATATTTTTCTGTTTCTCCCTTTCTGTTTTTGCAGGATGGTTTTGGCACAAGCGAGATGTTGGAGGGGGGGAAAGGCTTGATATCAGGAAGCACTTATGATACAAAGGCAGGGGATAGCTAATGACTGTTTTGATTGGTTCTTTTTCCTTCCCCAGCAATCATAAGTGCCTTttgatttatttgtttttatttttccaACTGTTGTAAGTAAACAATGCTTGTGTTGGGAGAGTTTGGCTTGTAGAAATGGACACTAGTTGTTTTGAAAGCAATTTGTCATATTCTGCCTTTAGTTGTCTTTTGTTTTCCCACACCTGATTGGATTAGGAAGTGGAGGGGAAATCTGAGATTGCCCATTCTCAATATTCAGTCAGTACAACCACATCGATCGTATAAATCAGATCACCAACTTCTGTTCTTTCATACATCGGTACATACATCTCAGACTATCCACTTCTAAAGTCACATTGTCTCTTGTGATCTTTCCTTAATCGGAACAGTACTTAATACAATTATGAACAGTCATAATTACGTTATGAATTCATAATGAATtgcatttgtttaaaaaaataatttaaactcCACTAATGCCTAGTACAAAatatgtacagttgtggccaaatatGTAGGCACCTTTGCACTTTACAGTGGAACAGATTGTACTAGTGGTTAAAGCTTTGAggccagtaattgaaaggttgctggatcgaatccccgagctgacaaggtaaaaatctgtcacccccccccccccccccccccacctctctgattcagaggggttgggttaaatgggggACACACAtctcagttgtacaactgacaaggtatccccttttcccttTAATATTTCTTATTTTCAAAACTGGTTGGGTGGCTATTTTTTACCCTGTAGGCACTTGCAATTTATAAGTGAGGAAAAATTACACATCACTTGCCTCCAACCAAATGTATTAGAATTCCAATAATGTCACCAAGGCCATATTTTGACTTAAATCAAAATGTCAGTTTTGATAAAAACATGTCTTGGTCCTGTGCAGATGTAAATCAAACAAATATAGGTGTGAACTTATTTGATAAGAAAATAGTGAATCgttcaagggtgccaatatatttgtctgtatatgtatatgtgcgCACAGCGAGAGATTTTATTATGGTCTGTGGGCAGTGTGTTCAAATAATTTTCTGTTGACTGAATGCTAAAGCCTGCATgggaagttttttttttcttttttctcccCTATGCATGACAACACTGCTCTCTGAATCAATGTTTGATGTGTATGATTATCATTGAGCTATAGTGTTGTGGGTTAAACTTtcaagatatgtttttttttctctgatGCTAAAATGCTGTTAGAGACTAATAGGAATGCCAAGAAAGCCAGATTTGTCATTTGACCTGTCCCATTAAACCAATGCAACGTTT
>XM_036940841.1
GAAGGCAGCATGCCGCCTAGAGTTGGAGAGCTAGGACTGACAGGATTTGTGAAGAGCAGAGTCAACGACCTCTGCATAATCAAAACGGTTGCTTTGTGAGGTGTAAATTCCAGCTGAAAAGTACCAGAGGCCTGCCTTTGGTTCCAAGCGAGAGCGGGTCCATCAGAGCTATGACCCAGTGAGACACTGATGCTGGCCCGCATAGATGGGAAAGAAAAGTTTGAGCCTTTTTGGTGAAACACGGGGGGATATAATGTCCATCTACAAGGAGCCTCCCCCGGGTATGTTTGTAGTTCCTGACCCTCACGACATGACTAAGATCCATGCCCTCATCACAGGACCCTTCGACACGCCCTACGAGGGAGGCTTCTTCCTCTTTCTGTTCCGCTGCCCCCCGGACTACCCCATCCACCCCCCACGGGTCAAGCTCATCACCACTGGCCAAAACACTGTGCGCTTCAACCCCAACTTTTACCGCAACGGCAAAGTATGCCTCAGCATCCTCGGGACTTGGACAGGGCCAGCATGGAGCCCGGCCCAAAGCATCTCCTCAGTTCTGATCTCCATCCAGTCTCTGATGACTGAGAACCCTTACCACAATGAGCCAGGCTTTGAACAGGAGAGACACCCAGGGGACAGCAAGAACTACAATGAATGCATCCGCCATGAGACCATGCGCGTGGCTGTATGTGACATGCTGGATGGGAAGGTGCCCTGTCCAGAAGCCCTGTGGAGTGTGATGGAGAAATCATTCCTGGAGTACTATGACTTCTACGAGGGGGTCTGCAAAGAGAGACTACACCAACAGGGACAGAACATGCAGGACCCTTTTGGAGAGAAGAGGGGTCGCTTCGATTACCAGGGCCTACTGGCACGCTTGAGTGCCACCCAGAGGCGCATACGGGAGAAGTGCCCACCGGAGGACAACGATGAGCACTCGGACTCGGACACCAGCTCCTCAGGCACAGACCCAGATAGCCAGGGCAGCTCCCAGCCTTAGCCACCAGATGGTGCCACACTACCTATATTTTTCTGTTTCTCCCTTTCTGTTTTTGCAGGATGGTTTTGGCACAAGCGAGATGTTGGAGGGGGGGAAAGGCTTGATATCAGGAAGCACTTATGATACAAAGGCAGGGGATAGCTAATGACTGTTTTGATTGGTTCTTTTTCCTTCCCCAGCAATCATAAGTGCCTTttgatttatttgtttttatttttccaACTGTTGTAAGTAAACAATGCTTGTGTTGGGAGAGTTTGGCTTGTAGAAATGGACACTAGTTGTTTTGAAAGCAATTTGTCATATTCTGCCTTTAGTTGTCTTTTGTTTTCCCACACCTGATTGGATTAGGAAGTGGAGGGGAAATCTGAGATTGCCCATTCTCAATATTCAGTCAGTACAACCACATCGATCGTATAAATCAGATCACCAACTTCTGTTCTTTCATACATCGGTACATACATCTCAGACTATCCACTTCTAAAGTCACATTGTCTCTTGTGATCTTTCCTTAATCGGAACAGTACTTAATACAATTATGAACAGTCATAATTACGTTATGAATTCATAATGAATtgcatttgtttaaaaaaataatttaaactcCACTAATGCCTAGTACAAAatatgtacagttgtggccaaatatGTAGGCACCTTTGCACTTTACAGTGGAACAGATTGTACTAGTGGTTAAAGCTTTGAggccagtaattgaaaggttgctggatcgaatccccgagctgacaaggtaaaaatctgtcacccccccccccccccccccccacctctctgattcagaggggttgggttaaatgggggACACACAtctcagttgtacaactgacaaggtatccccttttcccttTAATATTTCTTATTTTCAAAACTGGTTGGGTGGCTATTTTTTACCCTGTAGGCACTTGCAATTTATAAGTGAGGAAAAATTACACATCACTTGCCTCCAACCAAATGTATTAGAATTCCAATAATGTCACCAAGGCCATATTTTGACTTAAATCAAAATGTCAGTTTTGATAAAAACATGTCTTGGTCCTGTGCAGATGTAAATCAAACAAATATAGGTGTGAACTTATTTGATAAGAAAATAGTGAATCgttcaagggtgccaatatatttgtctgtatatgtatatgtgcgCACAGCGAGAGATTTTATTATGGTCTGTGGGCAGTGTGTTCAAATAATTTTCTGTTGACTGAATGCTAAAGCCTGCATgggaagttttttttttcttttttctcccCTATGCATGACAACACTGCTCTCTGAATCAATGTTTGATGTGTATGATTATCATTGAGCTATAGTGTTGTGGGTTAAACTTtcaagatatgtttttttttctctgatGCTAAAATGCTGTTAGAGACTAATAGGAATGCCAAGAAAGCCAGATTTGTCATTTGACCTGTCCCATTAAACCAATGCAACGTTT

Function

NR:

description
ubiquitin-conjugating enzyme E2 Z-like

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557593.2 False 2996 mRNA 0.46 7 34277236 34292574
XM_036940841.1 True 2459 mRNA 0.45 7 34278722 34292574

Neighbor

gene id symbol gene type direction distance location
LOC110486176 LOC106607492 coding upstream 4428 34265384 ~ 34272808 (+)
LOC110485153 LOC106607489 coding upstream 55450 34218845 ~ 34221786 (+)
LOC110486161 LOC106607482 coding upstream 494227 33770439 ~ 33783009 (+)
LOC110486158 LOC106607478 coding upstream 623401 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 937509 33335447 ~ 33339727 (+)
LOC110486178 LOC106607494 coding downstream 16880 34309454 ~ 34366289 (+)
LOC110486179 LOC106607495 coding downstream 74723 34367297 ~ 34372229 (+)
LOC110486182 LOC106607497 coding downstream 130859 34423433 ~ 34429172 (+)
LOC110486181 LOC106607498 coding downstream 136759 34429333 ~ 34443615 (+)
LOC110486183 LOC106607499 coding downstream 165534 34458108 ~ 34491094 (+)
G1167609 NA non-coding upstream 2275 34274734 ~ 34274961 (+)
G1167585 NA non-coding upstream 25523 34251452 ~ 34251713 (+)
G1167558 NA non-coding upstream 48447 34228560 ~ 34228789 (+)
G1167508 NA non-coding upstream 52657 34224113 ~ 34224579 (+)
G1167507 NA non-coding upstream 53461 34223572 ~ 34223775 (+)
G1167622 NA non-coding downstream 9248 34301822 ~ 34302111 (+)
G1167647 NA non-coding downstream 80319 34372893 ~ 34373228 (+)
G1167648 NA non-coding downstream 80750 34373324 ~ 34373867 (+)
G1167652 NA non-coding downstream 84824 34377398 ~ 34377621 (+)
G1166779 NA other upstream 473571 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1028028 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1046753 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1554774 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2166503 32001741 ~ 32159164 (+)
LOC110486188 LOC107665142 other downstream 388614 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 1697282 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1875054 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1877322 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 2045519 36338066 ~ 36339755 (+)

Expression


Co-expression Network