LOC110486179 (LOC106607495)


Basic Information

Item Value
gene id LOC110486179
gene name LOC106607495
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34367297 ~ 34372229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940842.1
agagaacagaagatcatagGTTACTTGAAAGATGCGACCATCTACATTTGGAATTGTACGATGTGGCAGAGCATCAGGAGGGTGGGGAAGCGGAGTTGATGGTGCCCTACCTAACCGAAAGTCGTAGCAAACAGAAGATTTTGTGCAGACAGTTGTTTGTGCTGGATGACATGATGCAGCTtctggagagactggagacaaCTGACCAGCTGTTTAATGAACCCTGCCCCCCAAACCCCgGCAACGAAGCTCACAGACGCTGGAAGGTCCTGAAGAGTGAATATAAAGAGGGAGTCCAGGAGGTGGAGACACTTATTAGCACCTTACAGGACAGGATGGACAAACTGCACCACAAACGGGACAGACTGACAAACCTGGTCATAGCACTAGAGAAGAAGAAAGATCTCAGCCTGCAGATGGGGGAGTCCCTCAAGACGGCCCACAATGCCTTGCGTGTATGTGAGGTGCAGCTGGCCCAGCTGAGGGTGGAAACAGACGCCACACTGGCCCGCTCGGCTGACTGGCAGCACCTGAGAGATGTCCTGCAGGGCTATGTGGAGGAGACACAAGGGGTGATGCAGTGTAGGCTGTTGTCAGTGGGGTCCTCGGAGCTGTGTGTGGAACTGAGGCCCTGCTCCTGTGAATCCTCTGGCCAGCTGGAGCCTCTCAGACTGACTGTCACTTGGAGCCCTGATGACCACTTCCACCTCCAGGTGTATCAGGGTACTACAGGGCTGTTAGTGGAGTCCATGAAGGGTCGCCTTTCTCACCTCAGTGCTGCCCTGCTGGAGGTCATGCAGTGCTACATCAGCCAGGGAGAGATGCTGGCTGAGGTCCAGGCCCTACACTccagGTTTGCTATAGACTGGCGTCCAGGCCAGAGACTGCTAGTGTTCCTGAAGACTGCCTCTTCGGTGTGCAacctggaggtggaggaggactacCCTTCCAGAGGCACAGCTACACTCATCTCTGTACGCAGGGACGGCAAACTGGTCGACAACGCTGTCCTACAGCCTCCCCAGAAGACCCCCTCTCTGACAGAGTGGCTGGagttcctctcctccagtccgtACGTCTGACCATCTTCTCTCTAGTTGACACAGAGGAAGTGGCTGTTTCTCTCCATGGTCACCAAAGGGGCGCCCTTACCTCTAATATGTAAATATTAGGAATGTAACAATTCAATATGCATTGATCCTGGTTCAAATGTTGCTAGTGCATTGTCCCCAAACCAATCCAAATTTAGCATGCATCGGTCAGAAAACCGATTTTCAAACGTTACAATCGCCAGTTCTTTTCGCCAGTTCTTTTCACTCATTGTTTTATCCCAAAAATGCCTCTTATGTGTTGTGACTGAGTTGATGCATCCTCTCCTTCAGTTCAGTAGGCTATTGAACTTTTATGCGTGTAACTGCACATGACTGTCAGGTAGACACAGCTGCTTGCGCCGACTAGAAGTAGGCCTCTCCATGTTCTTAATGGGCTGTCCGGACATCACCGCGGCACCTTCAACATTCAGAGGCTTTGAAAATGGCTTTCTCAGTGTCATTTCGTAGGGTCTTACTAGTTGAGTGACAACCAATGCAATTTGCCGGGTCATTGTTACCAAATGCGCTGtagaattgttttttttactggGGTTGCGTAGTCTACCGGAGTGCACACAACTCGCATCGACCTGCTGAGTGGGGTTTTCAATCACTCTGATTTTATTTTGATTGTTCGGGTCCCCATAATAAATAGTTTGTTTAAAGAAAAACTA
>XM_021557597.2
TATGGCTATGAGAGAAGCCGCTCCCTTTTCCATCACACACGGACTACTTTCAATCTAATTGGACAATAATCTATCCAATCACATTCCACGTTGCACGGCGGCCGCTCAATTTTGAAAACCAAAATGGCTACTGAGGCTGTTCAAGCGTTACTTGAAAGATGCGACCATCTACATTTGGAATTGTACGATGTGGCAGAGCATCAGGAGGGTGGGGAAGCGGAGTTGATGGTGCCCTACCTAACCGAAAGTCGTAGCAAACAGAAGATTTTGTGCAGACAGTTGTTTGTGCTGGATGACATGATGCAGCTtctggagagactggagacaaCTGACCAGCTGTTTAATGAACCCTGCCCCCCAAACCCCgGCAACGAAGCTCACAGACGCTGGAAGGTCCTGAAGAGTGAATATAAAGAGGGAGTCCAGGAGGTGGAGACACTTATTAGCACCTTACAGGACAGGATGGACAAACTGCACCACAAACGGGACAGACTGACAAACCTGGTCATAGCACTAGAGAAGAAGAAAGATCTCAGCCTGCAGATGGGGGAGTCCCTCAAGACGGCCCACAATGCCTTGCGTGTATGTGAGGTGCAGCTGGCCCAGCTGAGGGTGGAAACAGACGCCACACTGGCCCGCTCGGCTGACTGGCAGCACCTGAGAGATGTCCTGCAGGGCTATGTGGAGGAGACACAAGGGGTGATGCAGTGTAGGCTGTTGTCAGTGGGGTCCTCGGAGCTGTGTGTGGAACTGAGGCCCTGCTCCTGTGAATCCTCTGGCCAGCTGGAGCCTCTCAGACTGACTGTCACTTGGAGCCCTGATGACCACTTCCACCTCCAGGTGTATCAGGGTACTACAGGGCTGTTAGTGGAGTCCATGAAGGGTCGCCTTTCTCACCTCAGTGCTGCCCTGCTGGAGGTCATGCAGTGCTACATCAGCCAGGGAGAGATGCTGGCTGAGGTCCAGGCCCTACACTccagGTTTGCTATAGACTGGCGTCCAGGCCAGAGACTGCTAGTGTTCCTGAAGACTGCCTCTTCGGTGTGCAacctggaggtggaggaggactacCCTTCCAGAGGCACAGCTACACTCATCTCTGTACGCAGGGACGGCAAACTGGTCGACAACGCTGTCCTACAGCCTCCCCAGAAGACCCCCTCTCTGACAGAGTGGCTGGagttcctctcctccagtccgtACGTCTGACCATCTTCTCTCTAGTTGACACAGAGGAAGTGGCTGTTTCTCTCCATGGTCACCAAAGGGGCGCCCTTACCTCTAATATGTAAATATTAGGAATGTAACAATTCAATATGCATTGATCCTGGTTCAAATGTTGCTAGTGCATTGTCCCCAAACCAATCCAAATTTAGCATGCATCGGTCAGAAAACCGATTTTCAAACGTTACAATCGCCAGTTCTTTTCGCCAGTTCTTTTCACTCATTGTTTTATCCCAAAAATGCCTCTTATGTGTTGTGACTGAGTTGATGCATCCTCTCCTTCAGTTCAGTAGGCTATTGAACTTTTATGCGTGTAACTGCACATGACTGTCAGGTAGACACAGCTGCTTGCGCCGACTAGAAGTAGGCCTCTCCATGTTCTTAATGGGCTGTCCGGACATCACCGCGGCACCTTCAACATTCAGAGGCTTTGAAAATGGCTTTCTCAGTGTCATTTCGTAGGGTCTTACTAGTTGAGTGACAACCAATGCAATTTGCCGGGTCATTGTTACCAAATGCGCTGtagaattgttttttttactggGGTTGCGTAGTCTACCGGAGTGCACACAACTCGCATCGACCTGCTGAGTGGGGTTTTCAATCACTCTGATTTTATTTTGATTGTTCGGGTCCCCATAATAAATAGTTTGTTTAAAGAAAAACTA

Function

NR:

description
uncharacterized protein LOC110486179

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940842.1 False 1765 mRNA 0.50 9 34367297 34372229
XM_021557597.2 True 1892 mRNA 0.50 9 34367887 34372229

Neighbor

gene id symbol gene type direction distance location
LOC110486178 LOC106607494 coding upstream 1008 34309454 ~ 34366289 (+)
LOC110486177 LOC106607493 coding upstream 74723 34277236 ~ 34292574 (+)
LOC110486176 LOC106607492 coding upstream 94489 34265384 ~ 34272808 (+)
LOC110485153 LOC106607489 coding upstream 145511 34218845 ~ 34221786 (+)
LOC110486161 LOC106607482 coding upstream 584288 33770439 ~ 33783009 (+)
LOC110486182 LOC106607497 coding downstream 51204 34423433 ~ 34429172 (+)
LOC110486181 LOC106607498 coding downstream 57104 34429333 ~ 34443615 (+)
LOC110486183 LOC106607499 coding downstream 85879 34458108 ~ 34491094 (+)
LOC110486187 LOC106600778 coding downstream 271521 34643750 ~ 34678134 (+)
LOC110486188 LOC107665142 coding downstream 308680 34680909 ~ 34687670 (+)
G1167622 NA non-coding upstream 65186 34301822 ~ 34302111 (+)
G1167609 NA non-coding upstream 92336 34274734 ~ 34274961 (+)
G1167585 NA non-coding upstream 115584 34251452 ~ 34251713 (+)
G1167558 NA non-coding upstream 138508 34228560 ~ 34228789 (+)
G1167647 NA non-coding downstream 664 34372893 ~ 34373228 (+)
G1167648 NA non-coding downstream 1095 34373324 ~ 34373867 (+)
G1167652 NA non-coding downstream 5169 34377398 ~ 34377621 (+)
G1167653 NA non-coding downstream 5630 34377859 ~ 34378116 (+)
G1167656 NA non-coding downstream 11785 34384014 ~ 34384310 (+)
G1166779 NA other upstream 563632 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1118089 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1136814 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1644835 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2256564 32001741 ~ 32159164 (+)
G1169121 LOC106607257 other downstream 1617627 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1795399 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1797667 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1965864 36338066 ~ 36339755 (+)

Expression


Co-expression Network