LOC110486182 (LOC106607497)


Basic Information

Item Value
gene id LOC110486182
gene name LOC106607497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34423433 ~ 34429172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557602.2
TGCCACTCCGTTTTATTATAGTATttgtaaaacaaatatatataatcCTTAGGTGTATATTTTGACGCAGGGTCCCCGTGCGCCATGTGAGCGCTGTAGCACAGAGGACGGCTCTGCCAGCTCCGGAGCGTGAGAGGAGTGTTCACACTAATAAACACTGCAGCGGCTAAGCATGGTCACCGGGCCTGTCCACGTGACAGGGGTGCTGTTACGACCAGGCATGGGGTCCGATCCTCTGCTGTTTTCGTGGAAAAAAATACTTTAGAGTGTAGCATCACTCAGTCATAGGCTACATCAATGTAAACACTTATCAGAGGAGCGGTAGAGAGACATGTGAGGGAAGAAGCGCAATATAATCTTGGATTTGTATATCTCCGTATTATAGGCCAAGGCTATAGCCTATTCGAAAAAAACTACCTAGCACAAGgcataactttttattttttaatgtttCTTTGTATTCATATGTTATTGTTAAAATATTATAGTAGGCTATTGCTTTTTTGCTGTTGAAGTTGGCCTGTCCATGCATGCTTATGAAACACTGTTTACTAAAAACAGGTGTTTCAACTGAATGTTACTTTACAAACAATGATGGGTGGGACTGACACCCGTTTCAGTTAGGAAAGTATACCATCTAGTGGTAAAAGAGCGACATTGATCCACAGTGACACCAACGTAGCAGCCTGTGGTCTCTAGTGTTGAGAGATATTAACTCATTTATAAGAAAAACAGAAACATGTAATGTTTATCTTCAACGAATCTTCCATCAACATAACTCCCTTACAAGATAGGGAATTTGGGGCCCCAGAATTGTCCTCTCCCCAAATAGAGAAGAGCCCAACCTAATATCAAGCAAGCAGGTGAAATGCCGTAATGCTGTATCCATTCCacagtactttaaaaaaaaaatccttgttGGTGACTGAGCCAGTTGCCAATAGGTTGCACCTAGTCCGCTTGTGAGTAGAGAAATAACAATTTCATCATGGTTGCATGATTGTACAAAAAAATATTAACAACAACAAATAGCAACAATCGTTAAAATTAGGTAGGAATATGCATTTGTCTTGGCCTTTTTATCCTTCAGAAATCCTCTGAAGTGCAACCGCTCGCTAATTGACCAATCAGAGGCGAGCATACGGGGAACGCATGCGCAATATCATTATTTTTAAACGACCTGAGAAGGTGGGCATCAAGGCGATAGGCTTGCATGGACATCTAGACAGCCCACTGTTGAGGAGAAACGGCATCCACGGTGTGAGATCAAGCTCTTTGTGCCACCAACGCCCCTGTCAGGAGGACATTGGTGGGCGTTGGTTGGCAAGGGTTCTGGTTGTAGGGTTGCCACAACAATGACATCCACTGTGTTCACAAGTGGAGGATATAAGCTGGACACAGTAGGGAAGATTGATTTGGTCAAAGCTCCAGCGGGAGGAACACCTGATTCCTTCAGCATCCTGAGGAGGGAGCCAAGTGAATATGTCATCGGAGTCCCAAACGTGCTGGGCAGTATCCACAACAGCAGCGGCCAGCAGCTTCAGGGGAAAGCCAAGGTGGTGCCAGGACAGGGACAGGTTACCTGCAGGCCTGGATCTGGACAGAACCTTGGGCTTGGGTCGGGGCAAGAGGAGAACTGGGTGAGCTTTGGAGCCCAAACTCCCCAGGGCAAACCGATGGGGGGCGAAGGCACCACACCAGTTAAGAGCAAGACACTACTAGGACAGACAAACAGCAATATGGGCAAGACGGACCTTGGAGTGCACAACACTATCAAACAGCCCCGGGACGATGTAGTGGGTGGCAGGGAGGTCAGAGGGGCTGCTACGGCAGCAGTCATGGGGGCACAGTCATCAGAACACAGCCCAGACTGCAAAAGAGGGAATATTAGGAAAGGGCCTGGTCACTCCCCTACACAGACCAGCTGCATACGCCAGATCCTCCTCCTCCAACTGGAACTCAttgaacaacagcaacagcagctcCAGTCCAAGAGTAAGGAGATAGATGACCTTAAAGCTGAGAAGGAAATGCTCATGGCGCGGATCGAGCGCATGGAGCGCCGTCTGCGGCTAGGTAAGAAGGATGGGTGTGACCAGCACCCCACCCACATCCCTAGCCGGCAACAAGACAAGGCAGCAACGCCAGGGACACCAGAGGGGCAGGGGCTGTCTGAGGGCCGCAGCAACCATACACCCCGAACGCTGAATTTTGGCAGAGGAGGCAAGGGTCACAAACGGCGTTTCCTCTTCCAGGACCCCAGGGCAGCCAAACGACGTGCCCAAGCCAAGGCTTCCCAGTCCCCACACAACGAGGCACTTCTCCCCAAAGAGGAGCCACTGGACGGAGGAGAGTTTTCAGATGGGTCTCCTGGAACCAGCTCGGCTGCCACTGAGGAACTGGACTACCTGTCCACCACAGACATGTACCTGTGTCGCTGGCATGTGCCTCCCCCGTCACCAACTTCGCGAGAGCCCTCACCCAAGAAGGAGGAGCCTGTGGCTATTCCCTCATGGAAGGAAAACCTTATGGAGCccctaggagaggaggaggcatcTGATATCCCTGAGAATCTGGATGACAATGTCTTCCTGAAGCGCCACTCGAAGCATGAACTGGatgagaagagaaggaagagATGGGACATCCAGCGGATCCGTGAGCAGCGAATGTTCCAGCGACTGCAGCAGCGCATGAACAAGAGGAAGGGTATCCAAGAGAGTGAGCCAGAAGTGTTCTCCTTCTACCCAGAAGCTGAGGATGtggAGTACCTCATGATCACCCCCCACCTTCCAGTGGTGGTGTTTGGACGACCTCTGCCAAAGCTGTCAAGACGGATCTTTGACCTGCCCTGGCTGGATGAGCGGAGCCGCTGTCGAGTTGAAGTGCCCAAAAAGCAGACCCCCCACCGGACCTGCCGTAAATAAATCTGTCCTTTCCACCTGAGTCCAAGAGAGGAGACTCCGGCTGGATTGGTGCCAGGCAGGACTCCTCTGTGTAAACGTCTGCCTTGTTATTtgggagaggaacacacacaggaggTTGGGGAATTGCATGCCACAATCCCCTAAAATCAAAGGATGCACTGTGCCACAGTTTGGACATAGTTGCTGGACTGCAGAACAGATCCTATAGTAGGGCTGGTTTGGAAGAAGATTGAGGGTGGTGTGGACTATCCAGGAAGAGCAGACATGTTTGTCTCCTCTAGATTCCCACTGGGTTCATTTGAGGACAGTTTTCCTCTTTGTCACTTCACCCCAAAAATCCCCAAGCTAAAGTTGTACAAACTGTTGACGTTGTCATTCACATTGACATGCCAGAATGGCTGACTCCCATCTGTATGTGATTGCTGTTGCATCCTATAGAAAGGAGATCTCCTGTTGGAGAtaaaaggggaaaaaaaacatttcacagtAGGAGAGTGAGATGGTTTGAAAGCGCTTCAGCAGCACTTATGGTTTGTGTTTCAAACAAGATGttgaaatttaaaaaacaaaaatgcTTTATGAACATGA
>XM_021557603.2
ACGGAGAACATCAAATAGACAGGTGGCCTTTAGTCATAAGTGTCAAGCACAATATGTTATAACGTTCAAGAGAAAAACGTAACTTTGTAAAGCGTTTAAAGTTAAAATGGCGTCAAATGAGACCGGGTTGGTTGAAGGCAAAGTGGCTGTCATTGTTTTGCTCTTTCCTGCGGACCTAAAATGGAGGACTTGGCTAACCAGCTAACGTAGCTAGCCAACTAAGCGACTGCAGCTCATCTGTTAACGTTTGTTACTCTAGGACTATTTCCCTTGTAACCAAGCAATTGCCAGTCGCTGCATAATGTGTTCTCCAATCACCCGTTTTCTTTCAAACACCGGCTAGGCTTGCATGGACATCTAGACAGCCCACTGTTGAGGAGAAACGGCATCCACGGTGTGAGATCAAGCTCTTTGTGCCACCAACGCCCCTGTCAGGAGGACATTGGTGGGCGTTGGTTGGCAAGGGTTCTGGTTGTAGGGTTGCCACAACAATGACATCCACTGTGTTCACAAGTGGAGGATATAAGCTGGACACAGTAGGGAAGATTGATTTGGTCAAAGCTCCAGCGGGAGGAACACCTGATTCCTTCAGCATCCTGAGGAGGGAGCCAAGTGAATATGTCATCGGAGTCCCAAACGTGCTGGGCAGTATCCACAACAGCAGCGGCCAGCAGCTTCAGGGGAAAGCCAAGGTGGTGCCAGGACAGGGACAGGTTACCTGCAGGCCTGGATCTGGACAGAACCTTGGGCTTGGGTCGGGGCAAGAGGAGAACTGGGTGAGCTTTGGAGCCCAAACTCCCCAGGGCAAACCGATGGGGGGCGAAGGCACCACACCAGTTAAGAGCAAGACACTACTAGGACAGACAAACAGCAATATGGGCAAGACGGACCTTGGAGTGCACAACACTATCAAACAGCCCCGGGACGATGTAGTGGGTGGCAGGGAGGTCAGAGGGGCTGCTACGGCAGCAGTCATGGGGGCACAGTCATCAGAACACAGCCCAGACTGCAAAAGAGGGAATATTAGGAAAGGGCCTGGTCACTCCCCTACACAGACCAGCTGCATACGCCAGATCCTCCTCCTCCAACTGGAACTCAttgaacaacagcaacagcagctcCAGTCCAAGAGTAAGGAGATAGATGACCTTAAAGCTGAGAAGGAAATGCTCATGGCGCGGATCGAGCGCATGGAGCGCCGTCTGCGGCTAGGTAAGAAGGATGGGTGTGACCAGCACCCCACCCACATCCCTAGCCGGCAACAAGACAAGGCAGCAACGCCAGGGACACCAGAGGGGCAGGGGCTGTCTGAGGGCCGCAGCAACCATACACCCCGAACGCTGAATTTTGGCAGAGGAGGCAAGGGTCACAAACGGCGTTTCCTCTTCCAGGACCCCAGGGCAGCCAAACGACGTGCCCAAGCCAAGGCTTCCCAGTCCCCACACAACGAGGCACTTCTCCCCAAAGAGGAGCCACTGGACGGAGGAGAGTTTTCAGATGGGTCTCCTGGAACCAGCTCGGCTGCCACTGAGGAACTGGACTACCTGTCCACCACAGACATGTACCTGTGTCGCTGGCATGTGCCTCCCCCGTCACCAACTTCGCGAGAGCCCTCACCCAAGAAGGAGGAGCCTGTGGCTATTCCCTCATGGAAGGAAAACCTTATGGAGCccctaggagaggaggaggcatcTGATATCCCTGAGAATCTGGATGACAATGTCTTCCTGAAGCGCCACTCGAAGCATGAACTGGatgagaagagaaggaagagATGGGACATCCAGCGGATCCGTGAGCAGCGAATGTTCCAGCGACTGCAGCAGCGCATGAACAAGAGGAAGGGTATCCAAGAGAGTGAGCCAGAAGTGTTCTCCTTCTACCCAGAAGCTGAGGATGtggAGTACCTCATGATCACCCCCCACCTTCCAGTGGTGGTGTTTGGACGACCTCTGCCAAAGCTGTCAAGACGGATCTTTGACCTGCCCTGGCTGGATGAGCGGAGCCGCTGTCGAGTTGAAGTGCCCAAAAAGCAGACCCCCCACCGGACCTGCCGTAAATAAATCTGTCCTTTCCACCTGAGTCCAAGAGAGGAGACTCCGGCTGGATTGGTGCCAGGCAGGACTCCTCTGTGTAAACGTCTGCCTTGTTATTtgggagaggaacacacacaggaggTTGGGGAATTGCATGCCACAATCCCCTAAAATCAAAGGATGCACTGTGCCACAGTTTGGACATAGTTGCTGGACTGCAGAACAGATCCTATAGTAGGGCTGGTTTGGAAGAAGATTGAGGGTGGTGTGGACTATCCAGGAAGAGCAGACATGTTTGTCTCCTCTAGATTCCCACTGGGTTCATTTGAGGACAGTTTTCCTCTTTGTCACTTCACCCCAAAAATCCCCAAGCTAAAGTTGTACAAACTGTTGACGTTGTCATTCACATTGACATGCCAGAATGGCTGACTCCCATCTGTATGTGATTGCTGTTGCATCCTATAGAAAGGAGATCTCCTGTTGGAGAtaaaaggggaaaaaaaacatttcacagtAGGAGAGTGAGATGGTTTGAAAGCGCTTCAGCAGCACTTATGGTTTGTGTTTCAAACAAGATGttgaaatttaaaaaacaaaaatgcTTTATGAACATGA

Function

NR:

description
male-specific lethal 1-like 1 isoform X1

GO: NA

KEGG:

id description
K13163 MSL1; male-specific lethal 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557602.2 False 3515 mRNA 0.49 9 34423433 34429172
XM_021557603.2 True 2651 mRNA 0.52 9 34424656 34429172

Neighbor

gene id symbol gene type direction distance location
LOC110486179 LOC106607495 coding upstream 51204 34367297 ~ 34372229 (+)
LOC110486178 LOC106607494 coding upstream 57144 34309454 ~ 34366289 (+)
LOC110486177 LOC106607493 coding upstream 130859 34277236 ~ 34292574 (+)
LOC110486176 LOC106607492 coding upstream 150625 34265384 ~ 34272808 (+)
LOC110485153 LOC106607489 coding upstream 201647 34218845 ~ 34221786 (+)
LOC110486181 LOC106607498 coding downstream 161 34429333 ~ 34443615 (+)
LOC110486183 LOC106607499 coding downstream 28936 34458108 ~ 34491094 (+)
LOC110486187 LOC106600778 coding downstream 214578 34643750 ~ 34678134 (+)
LOC110486188 LOC107665142 coding downstream 251737 34680909 ~ 34687670 (+)
LOC110485154 LOC106600810 coding downstream 341833 34771005 ~ 34775251 (+)
G1167662 NA non-coding upstream 32433 34390733 ~ 34391000 (+)
G1167656 NA non-coding upstream 39123 34384014 ~ 34384310 (+)
G1167653 NA non-coding upstream 45317 34377859 ~ 34378116 (+)
G1167652 NA non-coding upstream 45812 34377398 ~ 34377621 (+)
G1167648 NA non-coding upstream 49566 34373324 ~ 34373867 (+)
G1167692 NA non-coding downstream 63273 34492445 ~ 34492806 (+)
G1167694 NA non-coding downstream 71534 34500706 ~ 34500929 (+)
G1167695 NA non-coding downstream 72428 34501600 ~ 34501823 (+)
G1167671 NA non-coding downstream 73339 34502511 ~ 34505076 (+)
G1167669 NA non-coding downstream 86189 34515361 ~ 34515593 (+)
G1166779 NA other upstream 619768 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1174225 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1192950 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1700971 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2312700 32001741 ~ 32159164 (+)
G1169121 LOC106607257 other downstream 1560684 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1738456 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1740724 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1908921 36338066 ~ 36339755 (+)

Expression


Co-expression Network