LOC110486183 (LOC106607499)


Basic Information

Item Value
gene id LOC110486183
gene name LOC106607499
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34458108 ~ 34491094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557604.2
CCTGGTTTTCCGTGGGAGTGAGCAGCTGCCATTCAGCAGGCACTGAGGAGTACTGACTGCAACAAACGCGCAACTGCagatgaaggaaggaaggaatggagggagtgagtgagcgAGCTAATATAGCAGCGGTCCCAAATACAGCACGTTCACACTCTTCGGGGGTGTGCGTTTGTCCACACAGAGCTCGAACCACTGCATTCAATAAGCATTCAAacggagaaggggagagggaaacGCTGGTACTTATCTGAACAAGCTCCCACACATGCTGAGGGGCCGAGGCCATTCCCACTGGCGATATTACTGCAGTAGATTGCTTTGACGCCAGCAGCAAGACATACCCCATGCGGCAGAGACGCGTCGCATTTGTCGCTGGTAAAAAGCTACTGGGGCGCCTATTTACCACCCCCCGCTGTTATCCTTATATTTTGTTTCGGTTTATCGCACTGTGCTCTGCTGAGAGTGTGTGTTCGTCATCCAGTGTATTTTGGCCGCTGCTTGAAACTGACAAACATTGTTCCTTGACGCGCCCGAAACGTCTGCAGAGGTGGAGACGCCAGGGAGCGGTTGTTGTGGAGCAGGTTTGGATATTTTGCGATAAATGCCACTCAGCCAGAACGGGCAGTCGTCTGTGAGCACGCTGTCGCCGACGTCGATAGACTGCTGCTTCACAAATCGGATTTTTACACTGATCTTTTAAAATCATGATTTGACAAATGGGTTAATTATTTCCATGCAAGAGCTTACTACGAAGACAGGTCAATAGAAGTACGCATGGATGCTTGTATAATGTAGTCACACAACGATAGTTCCTGCAGAGGTATTCAGTTAATATCAATCACCAtcgaaaaaaacattttttttgcggTATTGTATCAAAATGCCGGCGGGAATGAAGCCCCTGGAAAAGTTTTTGAAGAAACAGACAACGGCGCTCACTCGAGCTGGTGGCTTTGGGGAGAAGGCGACTGGCACTGGCGCTTCTCGGCGGCGAGCCAGCCTGTCTCGGGTGGTTCCGTTTTTCAGGGAGACTTCTCCAGAGAGCGGTCCGGCCAGGGAGGTGTTCAGCCCGGACACTGAGGAAGCACCGTGCTGGCCCTCGGCCACTGCGGACATTAGGAGCCCGTCGCTGTCTAGCGATGAGCAAAGCTCCGAGACGAGTCTGGACACGAGCTGGACCCCGCTTCCTGCGGACACACCGGACAACCTGGCGCTGGCGCTCCTGGACAGTGTGGCGGGCAAACGATATGGCAACTGCACAGAAACCCTCCTGGATGACTTCATGTTGACACACCCCATCTTCCTGACCTCAGACAGGTTCCAGCAGGTCCTACTCCAGCAATTTGGTGTCGAGGGGAAGGCAGGTGAGGGCTGGCCCAGCTGGGACGGGGCAGAGAGGAAGCAGGCTGTGCTGAGTGTTGCCTTCCGTTACCTGGACACATACAGAGAACTGCTGCAGGAAGAGGGCGAGAGGTCCAACAGCTTCCCCAAGGAGCTATATCTGTGTGCAGTCCAAGAACTCAGTCAGTTCCCCGAGCTCGTGGAAGACGTGCTGAAGCTTCAGCGCTGGACCGAGATCCTCCAGTGCCCCAGctcagaggaggacaaggagattCGGAAGAAGCAGGTCCGCCCTCTTTTCCGCCACTTCCGTCGCATCGATGCCTGTCTGCAGCCCAGAGAGGCCTTCCGGGGCTCAgatgagatcTTTTGCAGGGTGTACACGCCGGACCACTCGTACGTGACGATCCGCAGCCGTCTGTCGTGCCGCGTGGGGGAGATACTGGCACTAGTCAGGGAGAAGCTTCAGTACAGCGAAGACCAGCCAACCCAACCTGGCAACCTGCTGCTGGTGGCTGTCACCTCCGCCGGGGAGAAGACCGCTTTCCGGCCTAGCGACGAGGCGGTCTTCACCACCCTGGGAGTCAACACTCACCTGTTTGCCTGCGAGCCCTCCGAGCTGGAGAGCCTGctTCCCTTACCTGAGGAGATCCACTGGTCACCCGGTGACAGTAAACTCCATGACATGAGTGCTGAGGAGGTAGCCACTCAGCTGGTGGTGTTTGACTGGGAGCTCTTCAGCTGCGTGCATGAGGTGGAGTTTGTGTGCTATGTGTTCCACGGCGAGCAGGCTCGCTGGCGCCCCCTCAACCTTGAGCTGGTACTGCAGCGATGCAGTGAGGTGCAGCATTGGGTCGCCACCGAGATCCTGCAGTGCCAGTCGCTGCCCAAGAGGGTGCAGCTCCTCCGCAAGTTCATCAAGATCGCAGCTCTGTGTAAGCAGCAGCAGGACCTGCTGTCCTTCCTAGCTGTTGTTCTTGGGTTGGACAACCCTGCAGTCAGCCGCCTTCGCCTCACCTGGGAGGGCCTACCTGGGAAGTTCAGGAAGCAGTTCCAGCAGTTTGAGAGCATTGCGGATCCATCCAGGAACCACAAGTCGTACAGAGACCTGATGGGCAGCCTCAGGCCCCCTCTCATCCCCTTCACACCGCTGCTGCTCaaagatctgACCTTCCTCCACGAGAGCTGCAAGTCGTTTCATGGGGAGCTTGTCAATTTTGAGAAGATGcaTAAAGTTGCAGAGATGGTGAGGAGCATCAGACGATACAGGAGCTCCCAACTAGctTTGGATACAGAGCCTtccccctctcacctccagaCCAAGGCCTACATTCGCCAGCTGCAGGTCATTGACAATCAGAACCTGCTCTTTGAAATGTCCTGCAAGATGGAGCCCAAAGACATGTGAGAGAAAGTGTGAGAAGAGGGACGAGAAAGAGGGAGATCGCCCCCATACCCCCCCCTTCTCCACTGCAACTCTGCCCTCCTCAATGGCCTCAACTCTGATTGGATGAATCAGCTAGCCATTTTTGTAACTTTGCTATGCTCTGTGTTTTCCTGGCTTCCTCCCACACCCTTCCCGGTCTGCTTGTCACGAGCCACCGCTGATTTTGTGTACAATACTCAGACTGCTGGAAACGGCTGAGAAAAATGACTGGAACTCTTTTCTTTGAAGCCTTGTGCGTGTGACTTTGTGAGCATGTTGATGTATGAGGAGGGCAAGAGGTTTCAGGACTGACTTGAGTAGCAAATTGGACAGCCATTTTGTGCAGAGGATGAATGAATAGTAGACTtttgtttgatttgtttttgtttcCCCAACACCAAGTCATGCTTTTGCTTTCACGTCCAAGTGAAGCCTGTCCAGTTTGCACTGCCACCAAACCCCCTTCCCCAACTGAACCTTTCTGAACTTACCCAAACCAGGATGGTTAGCCCAAATGGGGAAAGGCCGGCTTTGTTTTACTAGACCAGTTGAACTGAAGTCTCTATGACATTTGACCCCCAGACAATTCCTGCTATTGTCCCACCTTTTCTCTGTGAACTACTCGGACGTGAGACAATCTAACCCTGTGACCTCTAACCTAACTCTTGACCCCTCCCCACCAGCCAACATGGGCACTTACCACCGACCGCTCAGTGGCAGCCCTCAATGAGTCAGTGACAATTGGATAATAGAAAATATACTCCTGTACTAGTACTTCTGGGCTAAAATAAACCCAGAGTTTATACCTCTGAACAAAAGCTTCCACCATGTCACAAGAAGATGTGGTATTCTGAGTGATGGTGGAATGAAAAGTCTCTGAACCCCATTTATGTGCTTATTGGCTTATTGGCTCCCCACATTCAAAGATCTCTCTCATTGGCTGAGTCAGTTGTTGATTGACAGCTCTTGATAATCCcaccctttgggggggggggtgttcagaCTGAGGCCTCAGGTTCACCATCACAAGACAAACCCTTCTTTATGTACAGTACAGATGATGGCAGCCAACATATTTGTACCAACCAAGCACTTTTGCCTGACCTCAGGGTACATTTCAATGAGGATAATACAGCATGAGAATTGTTTGTGATTTGTACAAAAAtgttcagtatagttcagtatgatTTTTATCGCAATTTAACAAAGCCATTGTCACACAACTCTCAACAAAATAACCAAGGCCCGTTTTATTCTATAGGCATGGTACCATCATCATGGCCACTTGTACTGCACCATAGTTTCTAATATGCTGATTGATGAATTTTCTCATTTGAAAATGGAGTTAAACAACTGGACCCAGTGACGCTGACAACACTTGTTTGCCTGCAACTCTCTCAGGATCCCTGGGTCACGACCTTCGCGGAGGGCTGCCTGGCAATGCCTGTAcgataaagctgtaatgtaaatATTCTATGTGTAAATAGCTAAATAATATGGAGACTCTATTTTATGTAAGATGCAAGgagattattttatttgtttttgtaaatCTGAGAACGGGTGTAAATGGAGACAGAAATGGAGTCTGCTACTGTAGTTGAGGTGAATTGATGAATTGTACAGCATATttcttctgtttttttgttttcttaagcgagacggggtgggggggggggaatttgACTCGCGTGGggttttgtttttgtacagaAGTCAGTGTTTACAGTCATCTCTCCTGAAACTCAGATGTGTCATTAGACGTGGCCCAAGGTTATATCAGAGCAGTTGTATCAAACCCACCCTTAACCCTTAGGCAATGTGTAGATCTGGAGTAATTGGATAGGTGGTAAGGTAGTAAGACCTCCACTTTGCCCTGTGATAGGCTAGATGGAATTTTCACTACATTATATTACTTACACTTATCACCTGTTTAGGAGGTTGGGGCTGAGGGTTTGGGAGTCGATCTGTTCTTTTTAACCATGGGGAGGCCCTTCACTCTGGCCTCAGTTACCACGCACCTAAATAAAGCCTCTTCTGATGA
>XM_021557605.2
CCTGGTTTTCCGTGGGAGTGAGCAGCTGCCATTCAGCAGGCACTGAGGAGTACTGACTGCAACAAACGCGCAACTGCagatgaaggaaggaaggaatggagggagtgagtgagcgAGCTAATATAGCAGCGGTCCCAAATACAGCACGTTCACACTCTTCGGGGGTGTGCGTTTGTCCACACAGAGCTCGAACCACTGCATTCAATAAGCATTCAAacggagaaggggagagggaaacGCTGGTACTTATCTGAACAAGCTCCCACACATGCTGAGGGGCCGAGGCCATTCCCACTGGCGATATTACTGCAGTAGATTGCTTTGACGCCAGCAGCAAGACATACCCCATGCGGCAGAGACGCGTCGCATTTGTCGCTGGTAAAAAGCTACTGGGGCGCCTATTTACCACCCCCCGCTGTTATCCTTATATTTTGTTTCGGTTTATCGCACTGTGCTCTGCTGAGAGTGTGTGTTCGTCATCCAGTGTATTTTGGCCGCTGCTTGAAACTGACAAACATTGTTCCTTGACGCGCCCGAAACGTCTGCAGAGGTGGAGACGCCAGGGAGCGGTTGTTGTGGAGCAGGTTTGGATATTTTGCGATAAATGCCACTCAGCCAGAACGGGCAGTCGTCTGTGAGCACGCTGTCGCCGACGTCGATAGACTGCTGCTTCACAAATCGGATTTTTACACTGATCTTTTAAAATCATGATTTGACAAATGGGTTAATTATTTCCATGCAAGAGCTTACTACGAAGACAGGTCAATAGAAGTACGCATGGATGCTTGTATAATGTAGTCACACAACGATAGTTCCTGCAGAGGTATTCAGTTAATATCAATCACCAtcgaaaaaaacattttttttgcggTATTGTATCAAAATGCCGGCGGGAATGAAGCCCCTGGAAAAGTTTTTGAAGAAACAGACAACGGCGCTCACTCGAGCTGGTGGCTTTGGGGAGAAGGCGACTGGCACTGGCGCTTCTCGGCGGCGAGCCAGCCTGTCTCGGGTGGTTCCGTTTTTCAGGGAGACTTCTCCAGAGAGCGGTCCGGCCAGGGAGGTGTTCAGCCCGGACACTGAGGAAGCACCGTGCTGGCCCTCGGCCACTGCGGACATTAGGAGCCCGTCGCTGTCTAGCGATGAGCAAAGCTCCGAGACGAGTCTGGACACGAGCTGGACCCCGCTTCCTGCGGACACACCGGACAACCTGGCGCTGGCGCTCCTGGACAGTGTGGCGGGCAAACGATATGGCAACTGCACAGAAACCCTCCTGGATGACTTCATGTTGACACACCCCATCTTCCTGACCTCAGACAGGTTCCAGCAGGTCCTACTCCAGCAATTTGGTGTCGAGGGGAAGGCAGGTGAGGGCTGGCCCAGCTGGGACGGGGCAGAGAGGAAGCAGGCTGTGCTGAGTGTTGCCTTCCGTTACCTGGACACATACAGAGAACTGCTGCAGGAAGAGGGCGAGAGGTCCAACAGCTTCCCCAAGGAGCTATATCTGTGTGCAGTCCAAGAACTCAGTCAGTTCCCCGAGCTCGTGGAAGACGTGCTGAAGCTTCAGCGCTGGACCGAGATCCTCCAGTGCCCctcagaggaggacaaggagattCGGAAGAAGCAGGTCCGCCCTCTTTTCCGCCACTTCCGTCGCATCGATGCCTGTCTGCAGCCCAGAGAGGCCTTCCGGGGCTCAgatgagatcTTTTGCAGGGTGTACACGCCGGACCACTCGTACGTGACGATCCGCAGCCGTCTGTCGTGCCGCGTGGGGGAGATACTGGCACTAGTCAGGGAGAAGCTTCAGTACAGCGAAGACCAGCCAACCCAACCTGGCAACCTGCTGCTGGTGGCTGTCACCTCCGCCGGGGAGAAGACCGCTTTCCGGCCTAGCGACGAGGCGGTCTTCACCACCCTGGGAGTCAACACTCACCTGTTTGCCTGCGAGCCCTCCGAGCTGGAGAGCCTGctTCCCTTACCTGAGGAGATCCACTGGTCACCCGGTGACAGTAAACTCCATGACATGAGTGCTGAGGAGGTAGCCACTCAGCTGGTGGTGTTTGACTGGGAGCTCTTCAGCTGCGTGCATGAGGTGGAGTTTGTGTGCTATGTGTTCCACGGCGAGCAGGCTCGCTGGCGCCCCCTCAACCTTGAGCTGGTACTGCAGCGATGCAGTGAGGTGCAGCATTGGGTCGCCACCGAGATCCTGCAGTGCCAGTCGCTGCCCAAGAGGGTGCAGCTCCTCCGCAAGTTCATCAAGATCGCAGCTCTGTGTAAGCAGCAGCAGGACCTGCTGTCCTTCCTAGCTGTTGTTCTTGGGTTGGACAACCCTGCAGTCAGCCGCCTTCGCCTCACCTGGGAGGGCCTACCTGGGAAGTTCAGGAAGCAGTTCCAGCAGTTTGAGAGCATTGCGGATCCATCCAGGAACCACAAGTCGTACAGAGACCTGATGGGCAGCCTCAGGCCCCCTCTCATCCCCTTCACACCGCTGCTGCTCaaagatctgACCTTCCTCCACGAGAGCTGCAAGTCGTTTCATGGGGAGCTTGTCAATTTTGAGAAGATGcaTAAAGTTGCAGAGATGGTGAGGAGCATCAGACGATACAGGAGCTCCCAACTAGctTTGGATACAGAGCCTtccccctctcacctccagaCCAAGGCCTACATTCGCCAGCTGCAGGTCATTGACAATCAGAACCTGCTCTTTGAAATGTCCTGCAAGATGGAGCCCAAAGACATGTGAGAGAAAGTGTGAGAAGAGGGACGAGAAAGAGGGAGATCGCCCCCATACCCCCCCCTTCTCCACTGCAACTCTGCCCTCCTCAATGGCCTCAACTCTGATTGGATGAATCAGCTAGCCATTTTTGTAACTTTGCTATGCTCTGTGTTTTCCTGGCTTCCTCCCACACCCTTCCCGGTCTGCTTGTCACGAGCCACCGCTGATTTTGTGTACAATACTCAGACTGCTGGAAACGGCTGAGAAAAATGACTGGAACTCTTTTCTTTGAAGCCTTGTGCGTGTGACTTTGTGAGCATGTTGATGTATGAGGAGGGCAAGAGGTTTCAGGACTGACTTGAGTAGCAAATTGGACAGCCATTTTGTGCAGAGGATGAATGAATAGTAGACTtttgtttgatttgtttttgtttcCCCAACACCAAGTCATGCTTTTGCTTTCACGTCCAAGTGAAGCCTGTCCAGTTTGCACTGCCACCAAACCCCCTTCCCCAACTGAACCTTTCTGAACTTACCCAAACCAGGATGGTTAGCCCAAATGGGGAAAGGCCGGCTTTGTTTTACTAGACCAGTTGAACTGAAGTCTCTATGACATTTGACCCCCAGACAATTCCTGCTATTGTCCCACCTTTTCTCTGTGAACTACTCGGACGTGAGACAATCTAACCCTGTGACCTCTAACCTAACTCTTGACCCCTCCCCACCAGCCAACATGGGCACTTACCACCGACCGCTCAGTGGCAGCCCTCAATGAGTCAGTGACAATTGGATAATAGAAAATATACTCCTGTACTAGTACTTCTGGGCTAAAATAAACCCAGAGTTTATACCTCTGAACAAAAGCTTCCACCATGTCACAAGAAGATGTGGTATTCTGAGTGATGGTGGAATGAAAAGTCTCTGAACCCCATTTATGTGCTTATTGGCTTATTGGCTCCCCACATTCAAAGATCTCTCTCATTGGCTGAGTCAGTTGTTGATTGACAGCTCTTGATAATCCcaccctttgggggggggggtgttcagaCTGAGGCCTCAGGTTCACCATCACAAGACAAACCCTTCTTTATGTACAGTACAGATGATGGCAGCCAACATATTTGTACCAACCAAGCACTTTTGCCTGACCTCAGGGTACATTTCAATGAGGATAATACAGCATGAGAATTGTTTGTGATTTGTACAAAAAtgttcagtatagttcagtatgatTTTTATCGCAATTTAACAAAGCCATTGTCACACAACTCTCAACAAAATAACCAAGGCCCGTTTTATTCTATAGGCATGGTACCATCATCATGGCCACTTGTACTGCACCATAGTTTCTAATATGCTGATTGATGAATTTTCTCATTTGAAAATGGAGTTAAACAACTGGACCCAGTGACGCTGACAACACTTGTTTGCCTGCAACTCTCTCAGGATCCCTGGGTCACGACCTTCGCGGAGGGCTGCCTGGCAATGCCTGTAcgataaagctgtaatgtaaatATTCTATGTGTAAATAGCTAAATAATATGGAGACTCTATTTTATGTAAGATGCAAGgagattattttatttgtttttgtaaatCTGAGAACGGGTGTAAATGGAGACAGAAATGGAGTCTGCTACTGTAGTTGAGGTGAATTGATGAATTGTACAGCATATttcttctgtttttttgttttcttaagcgagacggggtgggggggggggaatttgACTCGCGTGGggttttgtttttgtacagaAGTCAGTGTTTACAGTCATCTCTCCTGAAACTCAGATGTGTCATTAGACGTGGCCCAAGGTTATATCAGAGCAGTTGTATCAAACCCACCCTTAACCCTTAGGCAATGTGTAGATCTGGAGTAATTGGATAGGTGGTAAGGTAGTAAGACCTCCACTTTGCCCTGTGATAGGCTAGATGGAATTTTCACTACATTATATTACTTACACTTATCACCTGTTTAGGAGGTTGGGGCTGAGGGTTTGGGAGTCGATCTGTTCTTTTTAACCATGGGGAGGCCCTTCACTCTGGCCTCAGTTACCACGCACCTAAATAAAGCCTCTTCTGATGA

Function

NR:

description
rap guanine nucleotide exchange factor-like 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557604.2 False 4814 mRNA 0.51 15 34458108 34491094
XM_021557605.2 True 4811 mRNA 0.51 15 34458108 34491094

Neighbor

gene id symbol gene type direction distance location
LOC110486181 LOC106607498 coding upstream 14493 34429333 ~ 34443615 (+)
LOC110486182 LOC106607497 coding upstream 28936 34423433 ~ 34429172 (+)
LOC110486179 LOC106607495 coding upstream 85879 34367297 ~ 34372229 (+)
LOC110486178 LOC106607494 coding upstream 91819 34309454 ~ 34366289 (+)
LOC110486177 LOC106607493 coding upstream 165534 34277236 ~ 34292574 (+)
LOC110486187 LOC106600778 coding downstream 152656 34643750 ~ 34678134 (+)
LOC110486188 LOC107665142 coding downstream 189815 34680909 ~ 34687670 (+)
LOC110485154 LOC106600810 coding downstream 279911 34771005 ~ 34775251 (+)
LOC100136181 LOC100136181 coding downstream 291684 34782778 ~ 34844267 (+)
LOC110486194 LOC106607505 coding downstream 403677 34894771 ~ 34906048 (+)
G1167662 NA non-coding upstream 67108 34390733 ~ 34391000 (+)
G1167656 NA non-coding upstream 73798 34384014 ~ 34384310 (+)
G1167653 NA non-coding upstream 79992 34377859 ~ 34378116 (+)
G1167652 NA non-coding upstream 80487 34377398 ~ 34377621 (+)
G1167648 NA non-coding upstream 84241 34373324 ~ 34373867 (+)
G1167692 NA non-coding downstream 1351 34492445 ~ 34492806 (+)
G1167694 NA non-coding downstream 9612 34500706 ~ 34500929 (+)
G1167695 NA non-coding downstream 10506 34501600 ~ 34501823 (+)
G1167671 NA non-coding downstream 11417 34502511 ~ 34505076 (+)
G1167669 NA non-coding downstream 24267 34515361 ~ 34515593 (+)
G1166779 NA other upstream 654443 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1208900 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1227625 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1735646 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2347375 32001741 ~ 32159164 (+)
G1169121 LOC106607257 other downstream 1498762 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1676534 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1678802 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1846999 36338066 ~ 36339755 (+)

Expression


Co-expression Network