LOC110485154 (LOC106600810)


Basic Information

Item Value
gene id LOC110485154
gene name LOC106600810
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34771005 ~ 34775251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110485154
TGGTATATAAAGATAGGTTTACTGTTGTCCTATCCAATGTATTTCACCTCGAAATACCAACGTCTCTGCGTAAGCACCTGCAATGCCTGTCAACCttctactcttcctcctcctcttcctccctgtttGTCACAGCTGCCACACTGGCTCCTTCACCGACCGCCAGAAGGCTCCGTTCGTCACCCGGTCACAACCTGGCCGGAGAGGGTTTTGACATTGTCAAGATGCAGACCTCCGGCACCTTTGTGGTGGATGTGCGGAAGTTCATGGTGGGTGGACACGACGGTAACTGCACCCTGTGCACCAACACTCTGGTGGACAGCCAGGTCCAGAAGTTACCGCTCTCCGTACTGGACTGGAGCACAAAGGTGACGTGTCGTTGGAGCTTCAGCAGCCAGATGTACGAGTCGAGCAGCTCCGTTCTGAAGGAGACCACTAACTCTGCCAGCGTCAGCTGGAAAGCTGGCCTGGGAATCAAGGCCATTGCGGGCGTTGCTGTTGGAGGCGCACACTCCAAAACTGCCATGTTCGCCAGAGACACGTTCTCTTTCACCAGCCATAAATTAAAATGCAAATACTACACCTTCCGCCTCTGAACCCAACCTCCCCTGAGCCAGGAGTTTCAGGACTCCCTAAAAAAAACTCCAGCATGTACACTCACAAGACCGGCCCTGCCTACAGCCATTTCATCGCCATCTATGGCACCAACTACATCCGCAAGGTGAACTTTGGGGGCCGGGTGCACTCCACCACAGCCATACGCACCTGTGAGATTGCCATGAGCGGCCTCTCCCTCCATTCTGTCAGCAACTGTCTGGGGGTGGAAGCCAGTGGCGCCATCAAGGGTGTCACGATCAGCGCCGAGACCAATTAAGTCCCAGAGCAAAAAACTGAAGACAGGCCATAGCTTCGGAGCCACCTTCCCGGACGGCATCACTGAAGTGATCCTCTTCAACTCTGACATTAAGTCTGACTATAAAACCTGGCAGAAGTCCCTGAAGAAGGTCCCTGGTGTGGTGTCTTACCAGCTCAGCTCCTTGCACTTCCTGGCCAGAGACAACCCCATCCTTAAGGCCAACCTGCGCAATGTCGTCAGAGACTACATCCAGAAGTACGCTGTGTCCACCTCCTGCCCTTCTGCTTGCAAGATGGGGAGACGCAACAAAGACTGCATCTGTAAGTGTAGCGGTCACAGGAACGTGGACTCCAACTGCTGCCCCGGTAAACCGGGCGTGGCCAGGATGAATGTGACGGTGGTCCGAGGTACGGGGCTCTGGGGCGACAACGTATCTAAGACAGACGGCCACGTCAAGGTCTTCTACGGAAAGCAAGGCAGTTCCACTCCTGTGATCTGGAACAATGACTTCCCCTACTGGAACTACAGGATTCAGTATGGAACGGTGGATTTGAAAAGTAGACAAGCCTTGAACTTTGAGGTGTGGGACCGCGACCACAGATGGAACGATGACCTGCTAGGAAAGGGCTCCATAACCCCTCAAAGGGGCATGAACCTCAACCAAAGTTTCAAGTTGAAACACGGTACAATTTttgtgtccctgtctgtagttTGCAGCCCCATCCTTCTGTGATCAGTATGCCCCCTCGCCTGGGTCCCAGGGTAGGCTGAGTTATGTCCATGACTGGGACAGTGAGACCGAGACGTTACCCACCCTCTTCCAGGGTTCCCACAGTAAACGGAACAGGACCGGTGCCCTTCATGTTAAATGACTTACTTAattacaatataataataatatatgccatttagcagatgctttttaTCCAAAAGgacttacagtacagtgcatATATTTCAGAGTATGTGACCACCAGCGGGAATCCAACCCACAACCCTCTAACCAATACTCTTGTCATCTGAGCCACATAGGACTATTTACTCCTCTTCACTCCCTGTGGAGCATAAGGCCGCAACAACACACGACATGCCAGACGGTCCTTTGCAgttctctctctgctgcttcaCCTTTGTTACATGAGGCTAATGGTAAATCAGTTCAAAAATATTCATTAAATCTATAGGTCAACCAATTAGCTTGCGTTGAGAAGCTCGGTCTTTCCTTTCCAAGGCGATAAAATGATTCATTGCTTCAGGGTTGCCTCTACATTCGTATCGTTTTTCTTTCTGTCACAAAACAACATTCATTTCTCAATATTGACCCATTTTTTTTCTACAATTCTATGTAATGTCTGATACATCCAAATAGTTGGGGTTTCAGTATTACTCGTATAACCgcgacacacaaaaaaaaacttcTTCAAAGTCATGCGAAAGGAGGGATTTTAGGTCTACTTGAGGCCTGCTTGAAGGGGAACATTACCCAAGTGCTTTTGCTGATTCATTACCACCCAGATGAAGTGGGTGAGACCAATGAGTCTGGATGCATCACTCTGGATGGTtgcaaatggcatcctattccatttatagtgcattaccttagaccaggtcccatagggctctggtcaaaagtagtgcactatatagggaatagggtgccatttgggacgcatactcCGCATTAGACGAAGGTAACAGAAATATGACCACATTCCTCAACTGGCTTGGCAACAGCTGAGAAAGCAAATGTGGCTTACATTTAGTTTtcactgtatttattattttttgttgTATAATTATGTTCCTTTCCTTTCACATTTGTTTAAACTTTGTTAATGAAACTTACATTTGATCATTGAATTTTCTTTTTTCTGCTTGTACTGTCATTCAATAAATTGA

Function

NR:

description
PREDICTED: perforin-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110485154 True 2755 mRNA 0.48 4 34771005 34775251

Neighbor

gene id symbol gene type direction distance location
LOC110486188 LOC107665142 coding upstream 83335 34680909 ~ 34687670 (+)
LOC110486187 LOC106600778 coding upstream 92871 34643750 ~ 34678134 (+)
LOC110486183 LOC106607499 coding upstream 279911 34458108 ~ 34491094 (+)
LOC110486181 LOC106607498 coding upstream 327390 34429333 ~ 34443615 (+)
LOC110486182 LOC106607497 coding upstream 341833 34423433 ~ 34429172 (+)
LOC100136181 LOC100136181 coding downstream 7527 34782778 ~ 34844267 (+)
LOC110486194 LOC106607505 coding downstream 119520 34894771 ~ 34906048 (+)
LOC110486195 utp18 coding downstream 144080 34919331 ~ 34932630 (+)
LOC110485155 LOC106600806 coding downstream 162314 34937565 ~ 34947362 (+)
LOC110486197 LOC106607508 coding downstream 199864 34975115 ~ 34998416 (+)
G1167831 NA non-coding upstream 71794 34698976 ~ 34699211 (+)
G1167807 NA non-coding upstream 86377 34652483 ~ 34684628 (+)
G1167777 NA non-coding upstream 110032 34609617 ~ 34660973 (+)
G1167715 eif1b non-coding upstream 126179 34641785 ~ 34644826 (+)
G1167712 NA non-coding upstream 234412 34535322 ~ 34536593 (+)
G1167931 NA non-coding downstream 77519 34852770 ~ 34852974 (+)
G1167933 NA non-coding downstream 79444 34854695 ~ 34854931 (+)
G1167741 NA non-coding downstream 86893 34862144 ~ 34863493 (+)
G1167934 NA non-coding downstream 96571 34871822 ~ 34872185 (+)
G1167936 NA non-coding downstream 99133 34874384 ~ 34874615 (+)
G1166779 NA other upstream 967340 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1521797 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1540522 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2048543 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 1214605 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1392377 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1394645 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1562842 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1775770 36551021 ~ 36582092 (+)

Expression


Co-expression Network