LOC110486195 (utp18)


Basic Information

Item Value
gene id LOC110486195
gene name utp18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34919331 ~ 34932630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557618.2
TTGCGTGGGCCATGAGTTCTTCTCTGTGCACATACTTTGCAAATTTGGGAAATAGTGCAGCCGCACGTTCCCTTTTCTCACAACTAACACAGCGTTGCAGCAACCCCATGTGGAAAACATTGGGTGCATGAGGCATGTTATTGTAAAAGACTAGCTAGCACATTTATGAGTCTACTGAATCTTGTTAAATTCTAGCGTGTCCTGATACAACTTGCAATTCGTTTCTTATGCTAAGGTTTAAACGATAAACATGGACAAAGTTGGTAAACACTctagaaaggggagagagacgaCGAAGAGAGTCTCTGAACCAGAGCCTGACTACGATGAGGAAGTGCTAAAAAGACACAAAAACGCCCAGGCAGTGACTGTTTTGGGCGAAGAAGATGCATCTGTAAAACTTCTAGAAGATCTTGTTTTTGGTGCTGAAGATGATCTTGTGGAAAGGCTGGTGGAGGACCGAGAGGATGGAGGTGCCACACTTCTGGATGATGACGATTCCAGCGATTCCGATGTAGAGAATGAAGCACGGCTGAAGGTTCAGCCAACGAGGACAGCAGTATgggaggatgaggatgatgatcTGGAGGAAGAAGTGGACATGACACACCGGTTCCGTAGAGACCTGGCCAAGAGTGACGCGGAGGCCAAGATGTCCAAACAGAAGTTACAGCAGAGGATGAAAGAACAGTTCCAAAAAGCAATGGGTGGAATGCCGTCCTGGGCAGAGACAAAATTTAAGAAAAAGAATAAGAAAAAAGATGACTCTGATGACTCTGATGAAGATGGAGACGACCTGATGAGGAAGACGGGCAACTTTGTGGGCTCATCCGACAGCCTTCCCAAAGGAATCATACGGATGAAGAAGTGCCTACACGCCAACAACGACCGGCCGTCTAAGGACAGGCTGACCACGGTGCAGTTCCACCCCTCTGCCCAGGTTGTCATGACAGCAGGGATCGACCAGTCCATCTCTCTGTTCCAGgtTGATGGGAAGACCAACCCTAAGATTCAGAGTATTCACCTGGAGAGGTTCCCGGTGCACAAGGCCCAGTTCAGCGTGAACGGGGAGCAGGTGGTGGCCACCAGTTTCAGGAACAAGCTGTTCTACATCTACGACATGATGGAGGGCAAGGTCATCCCTGTCCACACTgtcagagGTCTGAGGGAACAGAGGGTGAAAGAGTTTGAAGTCTCCCCTGATGGAGAATCCCTCCTTCTCACTGGCACCTCCGGATACCTCCACGTGTTAACAATGAAGacaaAGGAGGTAGTGAAAAGCTTGAAGATCAACGGAAACGTTGTGGGAGTGGCTTTTTCCCACGACGGCAGCAAAGTCTTCACAAATTCTGAGGAGGGTGAGGTGTACATATGGGACATGAGGAGCAGTAAATGCCTGAACAGGTTCACAGATGATGGCTGTGTGAGTGGGACCTCCATGGCTGCATCCAAGAACGGACAGTATCTGGCCTGCGGGTCAGCGGCAGGTGTGGTGAACGTGTACTCGCAGGAGGAGTGTATGCGGCAGAACAACCCCAAGCCTCTGAAGGCCATCATGAACCTGGTGAACTCTGCCACCTCTCTCCGCTTCAACCCCACCTCCGAGATCCTGGCCATTGCCTCCAGGGCTGACGACGAGGCTGCCCGAttgGTTCATATCCCCAGCTTCACGGTGTTCTCCAACTTCCCCATGTTCCAGAGGAAAACCATATACAGAGCCCACCGCCTGGACTTCTCCCCAAACAGCGGCTTCTTCTCTCTGGCCAACAACAAGGGCCATGCCCCTCTCTTCAGGTTGTTGCATTACAAAGACTTTTGATGAAGAGCATCACAAGCAGGCCTGTAATCAACATCAAGACACCAAGCTCCCTCAATACAACTACCATTGTCTTCAAGAAGACATTTTACAATGAAAAGGACTTCAATTGTGAACTCGGTTATGGTCATTTCATCTATGAAAGTGTCACAGCAAGATACCATGTCTTTGTTATCCTGTTTTTTTCCCTTCAAATTTGAgtgattacattttttaagtGTTCAGTTTTCAAAATGCTTGTCCTGTGTATTTCTTTCTGTCTACTTTAGGGTTTGACAAATGTTTGTATAATGGATAAAGTACAACTTCATTTCCTTGATACTTGGCCATTAGTATAGTTTATTCTGTTCCTAGATATCTCAGAGAACAATAACATTATAGATTGACTAGTATAGAAAGGCTGTCAAACTTGTATGCACTAAAGCCCCGTTAGTCTACTCCATGTTGACCTGAAAATCTGTTGCTTCCAGCCACAATAATGGATTAGTATTCACTGTGACTTCCATTTTGACCAAAGCGCTCCTCCAAATCTGATGATCATTTTCACACAATTTTGGATTAAATACTTAAtgttcagtgccttcagaaagtattcataccccttgacttattccacatttttgttattACAGCCTAaattctaaatggattaaatatgttttgcaaatgtattaaattaaatgcAGCAATATCTCATTTACACCTTTGCTATGACATCTAATTGCGCTCGGGTGCATCCAATttaatttgatcatccttgagccgttgctacaacttgattagagtccaccgttggccaattcaattgttttgacatgattttgaaataaacacacctgtctatataaggtcccacagttgacagtgcatgtcagagtagaGACTATACCAAGAAGTCCATGGAACTGGCCATAGAGTGCTGAGGTAGAATTGTGACAAGGCGAATCTGGGAAAGGGTATAAAACCATTTCTAGAGCGTTGGaacgtttccaagagcacagtggtctgcatcattgggaagtaaaaataaataatatgggACTACTCAAGACTGCCTAGAGCTGGACCTCTGACCAAACTGCAGAGGGAAAAAATcaggtcaaggggtatgaagactttctgaaggcacagccTATCTGGCCCAGCTTATCGGCAGACCAATAAAGCGAAGCTAATATAAACCCTTACTTTGCATTCATGCTCCCAGTATGGCTCATAGAACAGTTTGCTTGATGGTGCCATTCGCACTGTGAAATTGACTgctttattttttcatttttttactgCACTAAAGGGACCTCCCTGCTGAGCCACAGCattgagagaaacacacacacctacagactCCAGATGAATGACAGTAACGCCATGTGTTACATGCATTAGATCCTCCTTTAGGACGTCAGTCAGGGTAGGCAGCATTCCAACACCTACATTTCTCCTCATTAGTAAAAGATGAAGCACTGTGTCCTCCCTAAGGCGTCGTAGTCGTTTGTATCTGCATTCAGACAAGTAATTTCTCTTCCCCTCGTGTTTCAATGCATGTTtatcacatttattgttttggtcTGTCCTGAGGTGCTCCTGTAATATAATAGGCTGGAGAAATGTCTATGATAAATGAACCTTAacaccaaacaaacaaaaatagtttTCCCCTGTAGTCCCCCTAATGCAGAAACCAACAGAAACTATTAACAGGTGGGAAGTTTCAGAAACAAATAATGAGCCTCATCAGCATTTTACTTAGTTTTAGTTCTCATGTGGGTGTCTCGAGAGTCGGAAATAAATATATTTGCCCTGCAGATCAGACATGGAAAAATAGCTGCAGTTGTGAAATTAATGGTGATTTGTGTAAATATAGGTTTAGAATCTGTGTTTGTCCTAtctattctctggtctgtctgacTAATTTACAGATTTGCGATTTCAGCAGCAGGTTGCAGCTGTGTAGTTGGTGAACCTCTTAAAATAACCACAAACTCCATCTATCTCTTATGAATATGTGCTAGTATCAAAATGATCTACACTAATTAGCCATATATTTTTACACAGTCTGTCTCTTTCACACGCATGTTAAAGGAGAAATACAGTggcttcaaaaagta

Function

symbol description
utp18 Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Orthologous to human UTP18 (UTP18 small subunit processome component).

NR:

description
U3 small nucleolar RNA-associated protein 18 homolog

GO: NA

KEGG:

id description
K14553 UTP18; U3 small nucleolar RNA-associated protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557618.2 True 3924 mRNA 0.44 13 34919331 34932630

Neighbor

gene id symbol gene type direction distance location
LOC110486194 LOC106607505 coding upstream 13283 34894771 ~ 34906048 (+)
LOC100136181 LOC100136181 coding upstream 75064 34782778 ~ 34844267 (+)
LOC110485154 LOC106600810 coding upstream 144080 34771005 ~ 34775251 (+)
LOC110486188 LOC107665142 coding upstream 231661 34680909 ~ 34687670 (+)
LOC110486187 LOC106600778 coding upstream 241197 34643750 ~ 34678134 (+)
LOC110485155 LOC106600806 coding downstream 4935 34937565 ~ 34947362 (+)
LOC110486197 LOC106607508 coding downstream 42485 34975115 ~ 34998416 (+)
LOC110486198 LOC106607509 coding downstream 69875 35002505 ~ 35023019 (+)
LOC118938633 NA coding downstream 85446 35018076 ~ 35018219 (+)
LOC118938634 NA coding downstream 86315 35018945 ~ 35019088 (+)
G1167936 NA non-coding upstream 44716 34874384 ~ 34874615 (+)
G1167934 NA non-coding upstream 47146 34871822 ~ 34872185 (+)
G1167741 NA non-coding upstream 55838 34862144 ~ 34863493 (+)
G1167933 NA non-coding upstream 64400 34854695 ~ 34854931 (+)
G1167931 NA non-coding upstream 66357 34852770 ~ 34852974 (+)
G1167958 NA non-coding downstream 608 34933238 ~ 34933462 (+)
G1167960 LOC106584099 non-coding downstream 2042 34934672 ~ 34934886 (+)
G1167961 NA non-coding downstream 3040 34935670 ~ 34935918 (+)
G1167969 NA non-coding downstream 17711 34950341 ~ 34951244 (+)
G1167972 NA non-coding downstream 39669 34972299 ~ 34972534 (+)
G1166779 NA other upstream 1115666 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1670123 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1688848 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2196869 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 1057226 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1234998 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1237266 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1405463 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1618391 36551021 ~ 36582092 (+)

Expression


Co-expression Network