LOC110485155 (LOC106600806)


Basic Information

Item Value
gene id LOC110485155
gene name LOC106600806
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34937565 ~ 34947362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110485155
ATGGCTGAGGCAGGGGTCATGGAGATGATTTCAGAGCAGGTGCTGACCTGCTCCATCTGCTTGGACCTGTTCAACAACCCAGTGTCGACGCCCTGTGGACACAACTTCTGCCAGGGTTGCATCGGAGGCTACGTTGCCTCCAGCTCCACCTGCACCTGCCCACTCTGCAAGCATCAGTTCCCCGAGCGGCCTCAGCTCAACATCAACCGAGTTTTCGCCCATATCGCTGAGTAATTCAAAGAAGCTCGCTACACCACGGCAAATCCGCACATGTTGGACATGAAGACCCCAGGAGCCATGGCCAACAGCAACCCCTTTCTGGAGGAGATGATCAAATGTGACGTGTGCACAGGGAAGAAACAAGTGGCGATCAGCTCGTGTTTGACCTGCACGGCATCCTACTGCGAGGCCCATGTGCAGCCTCACCTGAACACACCCTTCTACTCCAACCACCAGCTCCTGGAGACCCGGGGAGCGCTTCGCGGCCGCACCCTGCCCACTGCACCACCGGCTTCTGGAGGTGTACTGCCGCACGGACCAGATCTGTATCTGTGTGCTGGAGGAGCACCGCACCGTGTCCGTGCAGACAGAGTCAGCAAACAGgcagAAACTCATCGGGAAGACAGAACTAGAGATTCTGAACAGGGTTGAGGGGAAGCGCCTCCGTCTGAATGAGCTCAGGAGCCGACTGGAGACCGTCGGGAACTATGCACGGGGTGAGCTGTCGGAGGTGGAGCAGTTGCTGGGGGAGCTCAGTTGCTCGGTGGACAGGATCCGTGACGAGCTGGTGGGCGGGATGGAAGAGAAGCAGGCGTCTGTGGAAACAAGGGGGGAGGGGCGAGTGACACATTTGGAGGCGGAGCTTAGCCAGCTGCTGGTGCGGCGATCCAGATTGGAAGCCCAGGTCACATCTGATGACCACATTTGTTTCCTCCAGGTATGGAGGGAATACTCTGACACCCAGGAGTTGGATGCTGAGGCAGAGGTGTCGCTGCATTTCTCTCTGGGGGAGGGGAAGGTGGTTCTGGGAGAACTGAAGAAGAGTATGGCTCAAATCCGCATGGGGGAGGTGAACGTGGGTGAGAATAAAGACTGGAAGGTGGGTGTGGTGTGGGAGTCATCCCAGAGGAAAGGGCTGTTTGACATGAGCCCTAATAGCGGTTACTACGCCCTCTGGTGGGGGTGCACCCACCTGCGCGCCCTCACCAAGGTTAAGGCATCGGTGCGCCTCCCCAGAGTGGATGTCTTCCTGGATTGTGAGGAGGGTCAGGTGACCTTCTATAACATCAAGACTAGCTCGTCGGTGTACCGCTTCAGCGTGGCCGAGTTCTCTGAGAGGACATTTCCTCTGCTGGGGACAGGGAGGTGCCCCTGGCTCTCAAGATCACAGTGTGCTTGA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110485155 True 1399 mRNA 0.58 6 34937565 34947362

Neighbor

gene id symbol gene type direction distance location
LOC110486195 utp18 coding upstream 4935 34919331 ~ 34932630 (+)
LOC110486194 LOC106607505 coding upstream 31517 34894771 ~ 34906048 (+)
LOC100136181 LOC100136181 coding upstream 93298 34782778 ~ 34844267 (+)
LOC110485154 LOC106600810 coding upstream 162314 34771005 ~ 34775251 (+)
LOC110486188 LOC107665142 coding upstream 249895 34680909 ~ 34687670 (+)
LOC110486197 LOC106607508 coding downstream 27753 34975115 ~ 34998416 (+)
LOC110486198 LOC106607509 coding downstream 55143 35002505 ~ 35023019 (+)
LOC118938633 NA coding downstream 70714 35018076 ~ 35018219 (+)
LOC118938634 NA coding downstream 71583 35018945 ~ 35019088 (+)
LOC118938632 NA coding downstream 72187 35019549 ~ 35019692 (+)
G1167961 NA non-coding upstream 1647 34935670 ~ 34935918 (+)
G1167960 LOC106584099 non-coding upstream 2679 34934672 ~ 34934886 (+)
G1167958 NA non-coding upstream 4103 34933238 ~ 34933462 (+)
G1167936 NA non-coding upstream 62950 34874384 ~ 34874615 (+)
G1167934 NA non-coding upstream 65380 34871822 ~ 34872185 (+)
G1167969 NA non-coding downstream 2979 34950341 ~ 34951244 (+)
G1167972 NA non-coding downstream 24937 34972299 ~ 34972534 (+)
G1167984 NA non-coding downstream 52374 34999736 ~ 34999946 (+)
G1168035 NA non-coding downstream 176064 35123426 ~ 35124568 (+)
G1168013 NA non-coding downstream 177263 35124625 ~ 35125327 (+)
G1166779 NA other upstream 1133900 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1688357 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1707082 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2215103 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 1042494 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1220266 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1222534 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1390731 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1603659 36551021 ~ 36582092 (+)

Expression


Co-expression Network