LOC110486198 (LOC106607509)


Basic Information

Item Value
gene id LOC110486198
gene name LOC106607509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35002505 ~ 35023019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557622.2
tttttctttttttcttttttcataGAAGCGGCGCGTGATATCCTTCCGCGGGAGTCGAGCAAGGCCCTTTCCCTCCCGACAACACAGAATGAACAAGCGGCATTGCTGCTTAAACAATTTTTTTCCAGGTTCCGCGTTTGGAAATAGCCCATATCCAGAGTAAACTAATCGGCTGGGGGATACTGGGCGTGTGTGTTTTTCTCACCGGCTTTCGTTGATTTATCCACGGTCTTGTTACTTTGGTTGAACACTGAAGAAATATAATCCGGGGTTGAGTTGTGCGCGGCAATCTAACTAGCTAGCGACTTCTGTGTAGAGTGGTTGGGACAGAATGGAGCTGATAACAATCCTCGAAAAAACTGTCTCTCCAGATCGAAATGAACTGGAGGCGGCACAGAAGTTTCTGGAGCAGGCGGCAATTGAGAATTTGCCCACGTTCCTGGTGGAGCTCTCCAAGGTGCTCGCCAACCCTGGCAACACCCAGGTGGCTCGCGTGGCCGCAGGGCTGCAGGTGAAGAACTCACTCACCTCCAAAGACCCGGACGTGAAGACACGCTACCAGCAGAGATGGCTTGCCATCGACGCCAACGCCCGGAGGGAGATCAAGAACTTTGTTCTGCAGACCCTGGGCACAGAGACGTACCGGCCCAGCTCGGCCTCCCAGTGTGTGGCTGGCATCGCCTGCGCAGAGATCCCCGTCACCCAGTGGCCCGAGCTCATTCCCCAGCTGGTGGCCAACGTGACGGACCCCAGCAGCACTGAGCACATGAAGGAGTCCACCCTGGAGGCCATTGGATACATCTGCCAGGACATAGACCCTGAGCAGCTGCAGGACAACGCCAACCAGATCCTGACAGCCATCATCCAGGGCATGAGGAAGGAGGAGCCCAGCAACAACGTCAAGCTGGCTGCCACCAACGCGCTGCTCAACTCACTGGAGTTCACCAAAGCCAACTTCGACAAagagACGGAGAGGCACTTTATCATGCAGGTCGTCTGCGAGGCCACACAGTGCCCAGACACCAGAGTGAGTATCGTACGAGTGGCTGCCTTACAGAACTTGGTGAAGATAATGTCTTTGTATTATCAGTACATGGAAACGTACATGGGTCCGGCACTGTTTGCGATCACAATAGAAGCCATGAAAAGTGACATTGATGAAGTTGCCTTACAAGGAATCGAGTTCTGGTCGAACGTGTGCGACGAGGAGATGGATTTGGCCATTGAAGCGACTGAGgcATCGGAGCAGGGTCGGCCCCCGGAGCACACCAGCAAGTTCTATGCCAAAGGAGCCTTGCAATACCTGGTGCCCATCCTCACCCAGACACTCACCAAACAGGACGAGAACGACGACGATGACGACTGGAACCCGTGCAAGGCGGCGGGCGTGTGCCTGATGCTGCTGGCCACGTGCTGCGAGGACGACGTGGTGCCTCACGTGCTGCCCTTCATCAAGGAGCACATCAAGCACCCCGACTGGCGCTACCGAGACGCCTCGGTCATGGCCTTCGGCTCCATCCTGGAGGGGCCCGAGCTCAACCAGCTCAAACCCCTCGTCATTCAGGCAATGCCCACGCTGATTGAGCTGATGAAGGACCCCAGTGTTGTGGTGAGGGACACCACGGCCTGGACAGTGGGCAGGATCTGTGAGCTGCTGCCGGAGGCGGCCATCAACGAGGTGTACCTGGCCCCTCTGTTGCAGTGCCTCATCGAGGGCCTGGGGGCCGAGCCACGCGTCGCATCCAACGTCTGCTGGGCCTTCTCCAGCCTGGCGGAAGCCGCGTACGAAGCCACAGATGCAGCGGAGGACCAGGAGGAGCCTGCCACGtactgcctctcctcctccttcgaGCTCATCGTCCAGAAACTATTAGAAACCACAGACAGGCCGGACGGTCACCAGAACAACCTGCGTAGCGCGGCCTACGAGGCCCTGATGGAGATTGTGAAGAACAGCGCCAAGGACTGCTACCCAGCCGTGCAGAAGACCACCCTGGTCATCATGGAACGCCTGCAGCAGGTCCTGCAGATGGAGTCTCACATCCAGAGCACGTCGGACAGAATTCAGTTCAACGACCTCCAGTCTCTACTGTGTGCCACCCTGCAGAATGTGCTGAGGAAGGTGCAGCACCAGGATGCGTTGCAGATCTCAGACGTGGTGATGGCCTCCCTGCTCAGAATGTTCCAGAACACCGCCGGCTCCGGGGGTGTACAGGAGGATGCGCTCATGGCCGTCTCAACCTTGGTGGAAGTTTTGGGCGCTGACTTTCAGAAATACATGGATGCCTTTAAACCCTTCCTGGGAATTGGACTGAAGAATTATGCAGAATATCAAGTGTGTCTGGCCGCGGTGGGCCTGGTGTGTGACCTGTGCCGAGCCCTAATGTCCAACATCCTGCCTTACTGCGACGAGATCATGCAGCTCCTGCTGGAAAACCTGGGGAATGAGAATGTGCACCGGTCGGTGAAGCCCCAGATCCTGTCAGCGTTCGGAGACATTGCCCTGGCCATCGGAGGAGAGTTCAAGAAGTACCTGGAGATCGTCCTGGACACCCTGCAGCAGGCGTCGCAGGCACAAGTCGACAAGACGGACTATGACATGGTGGACTATCTGAATGAGCTGCGGGAGGGCTGTCTGGAGGCCTACACTGGCATCATCCAGGGCCTGAAGGGAGACCAGGAGAACGTGCACCCTGACGTGATGCTGGTGCAGCCCAGAGTGGAGTTCATCCTGTCCTTCATCCATCACATCGCTGAAGACGAGGACCACTCTGACGGCGTAGTGGCAAACGCCGCCGGACTTATAGGaGACCTGTGCACAGCCTTTGGGAAGGACGTGATGAAGCTGGTGGAGCTGCGGCCCCTCATCAACGACCTGCTGACGGAGGGCCGGAGGTCCAAGACCACCAAGACCAAGACGCTGGCCACCTGGGCCACCAAGGAGCTGCGTAAGCTCAAGAGCCAGGCCTGATTTCATGCTGGTTGGGGATAAGATGGACAACAATGAAAACGCCCCACTGGAATTTCTTCTGTCTTTTGCGTCGTGTCCGAGTTAAAGCAGAAGTGAAGCGTGCGCTGAGATGAGTGTCTGAGAATGTgtgagtgagagcgagagtgagCGAGGATCGACGTCACACCACCTTCTGAGTACAATTCCAGCAGTTGCCGGCAGACCAGCAGCGCCCCACCCCTGAACCCCCACCACCACTTCCTTAGGCCCCCCCCCCGCCACCTTCTTCTTCGGCCACCTGTGGACTGATTCTGACTTGACAAGGACTCCACACAAAAACGTGGATCGCTGTAGCCGGCTAGTTCTAGAACTCTTCTGAAAAAAAACTAATATTAGTCTACAACAGGATCACCAGAGCAGATAAATAAAACTGCCAAAATGTGGTTTCTTTTGAGGGAAAATACAAACAAAACATGATACGAAAGAACGCGACTATTTTGCTCTTTGACCGATCTGTGGAAGATTTACTTTTTCCCTtgtcatttttggggggtttccTTCAAGCACTATATGGTTGTGGACTTGGTCAATTTTACGCAAACGTGAACTGAACCGGAATCCGAAAAATACAAACTTTTGGGGTGTTAGAAATGCGCCTAAAGGATCACTGCTGGAGTTGAAGGAAGATGAAACGAGGGGGACGAGCAGGCGGTCTCCACCCCCCTCGTCTCCTACTTCTAGCCTCTCTGATATCCCCCAGCCTGCCCCTGCAAGGAGCCCCCACAGTGATTCAGGGGTGGAGCTAGCTGACCAGCCTGGAAGatgaagtgtgtgtctgtgagggaggggattcactgtctccacacccccaccccccccggttatttcaaataaataataaagcTTGACGCAAATTCAGTAAGATATATTTCTGATGCTGtttgggagagggcagtgggggCCCGGTAGATTACTTATTGGCAGCACTTGAGTGAATTGGCAAGAAGGTGTTTATTTCCtgcaagagaatcactgacaaaTGTTCACcggttcaatttttttttttttttttttaatggcatCAGTAGTTTCTCTTCATCTTCAGTGTGGGCTTCTAGATAAACAGACCCTTTCTTGCCAGCCCCGTTAACAAGAATTGGTGAGGATTTATGCGTTGAGTGCATCAGGATCAATCGAGGCTATGGGAACACTTCCAAAATAACTACATTTGACATGTAACACTTTATCTTCTTAGTGTTAAGATGAGCAAGGAGTAGAAAACGAGTGCCAAATTTAGACTACTCGTCATAGGGTAAAATacaacaagcaaacacacacttgCCTAAAGCATGCAGTTCAGAAAGAAATCTATTGAACTACATGATGAACAAGTGAATTGGGCTTGTTTCAGTTCCCATTTGTTGGTTTCTCGCTGCACTTAGTTGGAAAAGGGTCACTCACCAAGCTGTTAAAATGAGAATCGACTACGTTTGTACAAGGTTATATTTTTCCATTGCTATGAAAAGAAACAATAAAATGATATCAAACATTCCCCAAGCAGTTCTGGTACTTTGGTCTGTATTTTCTTTTGTTTCTTGCAACTGTTTGTAATGCACTGTGATGACTTTGGTGTCCATGGCAACGCTAGGTTGGTCGAGATCTCCTCCCCCCAGAAACTTCCAGAAAATGTATCTTGTCTATATTGGCATAATCAATCGGGTTCAATTTAACTTGTCATCACTGTTTTGTACTGTTTACGTTCTCCAATGCCTACGTGTTGGATATGAGGCGTTTTCCATTTGATTTGAGATTGGACATTTTTTTGCGGTGACTTTGGTCCTCACACCACTTTGGATTGTGTAACATTGTCCTCATGGGCTTGGCTATTTACACCATGTCATGTGTTGAAATGATATTAAGAATTGCAACATGAATATAGAATTGTGAACATTATGACAACCTGCTTTTTTTCTTTTCTTAATTTCCAACCTAGTAAACTAATAAAAATCTATATTGTACTTAA
>XM_021557623.2
tttttctttttttcttttttcataGAAGCGGCGCGTGATATCCTTCCGCGGGAGTCGAGCAAGGCCCTTTCCCTCCCGACAACACAGAATGAACAAGCGGCATTGCTGCTTAAACAATTTTTTTCCAGGTTCCGCGTTTGGAAATAGCCCATATCCAGAGTAAACTAATCGGCTGGGGGATACTGGGCGTGTGTGTTTTTCTCACCGGCTTTCGTTGATTTATCCACGGTCTTGTTACTTTGGTTGAACACTGAAGAAATATAATCCGGGGTTGAGTTGTGCGCGGCAATCTAACTAGCTAGCGACTTCTGTGTAGAGTGGTTGGGACAGAATGGAGCTGATAACAATCCTCGAAAAAACTGTCTCTCCAGATCGAAATGAACTGGAGGCGGCACAGAAGTTTCTGGAGCAGGCGGCAATTGAGAATTTGCCCACGTTCCTGGTGGAGCTCTCCAAGGTGCTCGCCAACCCTGGCAACACCCAGGTGGCTCGCGTGGCCGCAGGGCTGCAGGTGAAGAACTCACTCACCTCCAAAGACCCGGACGTGAAGACACGCTACCAGCAGAGATGGCTTGCCATCGACGCCAACGCCCGGAGGGAGATCAAGAACTTTGTTCTGCAGACCCTGGGCACAGAGACGTACCGGCCCAGCTCGGCCTCCCAGTGTGTGGCTGGCATCGCCTGCGCAGAGATCCCCGTCACCCAGTGGCCCGAGCTCATTCCCCAGCTGGTGGCCAACGTGACGGACCCCAGCAGCACTGAGCACATGAAGGAGTCCACCCTGGAGGCCATTGGATACATCTGCCAGGACATAGACCCTGAGCAGCTGCAGGACAACGCCAACCAGATCCTGACAGCCATCATCCAGGGCATGAGGAAGGAGGAGCCCAGCAACAACGTCAAGCTGGCTGCCACCAACGCGCTGCTCAACTCACTGGAGTTCACCAAAGCCAACTTCGACAAagagACGGAGAGGCACTTTATCATGCAGGTCGTCTGCGAGGCCACACAGTGCCCAGACACCAGAGTACGAGTGGCTGCCTTACAGAACTTGGTGAAGATAATGTCTTTGTATTATCAGTACATGGAAACGTACATGGGTCCGGCACTGTTTGCGATCACAATAGAAGCCATGAAAAGTGACATTGATGAAGTTGCCTTACAAGGAATCGAGTTCTGGTCGAACGTGTGCGACGAGGAGATGGATTTGGCCATTGAAGCGACTGAGgcATCGGAGCAGGGTCGGCCCCCGGAGCACACCAGCAAGTTCTATGCCAAAGGAGCCTTGCAATACCTGGTGCCCATCCTCACCCAGACACTCACCAAACAGGACGAGAACGACGACGATGACGACTGGAACCCGTGCAAGGCGGCGGGCGTGTGCCTGATGCTGCTGGCCACGTGCTGCGAGGACGACGTGGTGCCTCACGTGCTGCCCTTCATCAAGGAGCACATCAAGCACCCCGACTGGCGCTACCGAGACGCCTCGGTCATGGCCTTCGGCTCCATCCTGGAGGGGCCCGAGCTCAACCAGCTCAAACCCCTCGTCATTCAGGCAATGCCCACGCTGATTGAGCTGATGAAGGACCCCAGTGTTGTGGTGAGGGACACCACGGCCTGGACAGTGGGCAGGATCTGTGAGCTGCTGCCGGAGGCGGCCATCAACGAGGTGTACCTGGCCCCTCTGTTGCAGTGCCTCATCGAGGGCCTGGGGGCCGAGCCACGCGTCGCATCCAACGTCTGCTGGGCCTTCTCCAGCCTGGCGGAAGCCGCGTACGAAGCCACAGATGCAGCGGAGGACCAGGAGGAGCCTGCCACGtactgcctctcctcctccttcgaGCTCATCGTCCAGAAACTATTAGAAACCACAGACAGGCCGGACGGTCACCAGAACAACCTGCGTAGCGCGGCCTACGAGGCCCTGATGGAGATTGTGAAGAACAGCGCCAAGGACTGCTACCCAGCCGTGCAGAAGACCACCCTGGTCATCATGGAACGCCTGCAGCAGGTCCTGCAGATGGAGTCTCACATCCAGAGCACGTCGGACAGAATTCAGTTCAACGACCTCCAGTCTCTACTGTGTGCCACCCTGCAGAATGTGCTGAGGAAGGTGCAGCACCAGGATGCGTTGCAGATCTCAGACGTGGTGATGGCCTCCCTGCTCAGAATGTTCCAGAACACCGCCGGCTCCGGGGGTGTACAGGAGGATGCGCTCATGGCCGTCTCAACCTTGGTGGAAGTTTTGGGCGCTGACTTTCAGAAATACATGGATGCCTTTAAACCCTTCCTGGGAATTGGACTGAAGAATTATGCAGAATATCAAGTGTGTCTGGCCGCGGTGGGCCTGGTGTGTGACCTGTGCCGAGCCCTAATGTCCAACATCCTGCCTTACTGCGACGAGATCATGCAGCTCCTGCTGGAAAACCTGGGGAATGAGAATGTGCACCGGTCGGTGAAGCCCCAGATCCTGTCAGCGTTCGGAGACATTGCCCTGGCCATCGGAGGAGAGTTCAAGAAGTACCTGGAGATCGTCCTGGACACCCTGCAGCAGGCGTCGCAGGCACAAGTCGACAAGACGGACTATGACATGGTGGACTATCTGAATGAGCTGCGGGAGGGCTGTCTGGAGGCCTACACTGGCATCATCCAGGGCCTGAAGGGAGACCAGGAGAACGTGCACCCTGACGTGATGCTGGTGCAGCCCAGAGTGGAGTTCATCCTGTCCTTCATCCATCACATCGCTGAAGACGAGGACCACTCTGACGGCGTAGTGGCAAACGCCGCCGGACTTATAGGaGACCTGTGCACAGCCTTTGGGAAGGACGTGATGAAGCTGGTGGAGCTGCGGCCCCTCATCAACGACCTGCTGACGGAGGGCCGGAGGTCCAAGACCACCAAGACCAAGACGCTGGCCACCTGGGCCACCAAGGAGCTGCGTAAGCTCAAGAGCCAGGCCTGATTTCATGCTGGTTGGGGATAAGATGGACAACAATGAAAACGCCCCACTGGAATTTCTTCTGTCTTTTGCGTCGTGTCCGAGTTAAAGCAGAAGTGAAGCGTGCGCTGAGATGAGTGTCTGAGAATGTgtgagtgagagcgagagtgagCGAGGATCGACGTCACACCACCTTCTGAGTACAATTCCAGCAGTTGCCGGCAGACCAGCAGCGCCCCACCCCTGAACCCCCACCACCACTTCCTTAGGCCCCCCCCCCGCCACCTTCTTCTTCGGCCACCTGTGGACTGATTCTGACTTGACAAGGACTCCACACAAAAACGTGGATCGCTGTAGCCGGCTAGTTCTAGAACTCTTCTGAAAAAAAACTAATATTAGTCTACAACAGGATCACCAGAGCAGATAAATAAAACTGCCAAAATGTGGTTTCTTTTGAGGGAAAATACAAACAAAACATGATACGAAAGAACGCGACTATTTTGCTCTTTGACCGATCTGTGGAAGATTTACTTTTTCCCTtgtcatttttggggggtttccTTCAAGCACTATATGGTTGTGGACTTGGTCAATTTTACGCAAACGTGAACTGAACCGGAATCCGAAAAATACAAACTTTTGGGGTGTTAGAAATGCGCCTAAAGGATCACTGCTGGAGTTGAAGGAAGATGAAACGAGGGGGACGAGCAGGCGGTCTCCACCCCCCTCGTCTCCTACTTCTAGCCTCTCTGATATCCCCCAGCCTGCCCCTGCAAGGAGCCCCCACAGTGATTCAGGGGTGGAGCTAGCTGACCAGCCTGGAAGatgaagtgtgtgtctgtgagggaggggattcactgtctccacacccccaccccccccggttatttcaaataaataataaagcTTGACGCAAATTCAGTAAGATATATTTCTGATGCTGtttgggagagggcagtgggggCCCGGTAGATTACTTATTGGCAGCACTTGAGTGAATTGGCAAGAAGGTGTTTATTTCCtgcaagagaatcactgacaaaTGTTCACcggttcaatttttttttttttttttttaatggcatCAGTAGTTTCTCTTCATCTTCAGTGTGGGCTTCTAGATAAACAGACCCTTTCTTGCCAGCCCCGTTAACAAGAATTGGTGAGGATTTATGCGTTGAGTGCATCAGGATCAATCGAGGCTATGGGAACACTTCCAAAATAACTACATTTGACATGTAACACTTTATCTTCTTAGTGTTAAGATGAGCAAGGAGTAGAAAACGAGTGCCAAATTTAGACTACTCGTCATAGGGTAAAATacaacaagcaaacacacacttgCCTAAAGCATGCAGTTCAGAAAGAAATCTATTGAACTACATGATGAACAAGTGAATTGGGCTTGTTTCAGTTCCCATTTGTTGGTTTCTCGCTGCACTTAGTTGGAAAAGGGTCACTCACCAAGCTGTTAAAATGAGAATCGACTACGTTTGTACAAGGTTATATTTTTCCATTGCTATGAAAAGAAACAATAAAATGATATCAAACATTCCCCAAGCAGTTCTGGTACTTTGGTCTGTATTTTCTTTTGTTTCTTGCAACTGTTTGTAATGCACTGTGATGACTTTGGTGTCCATGGCAACGCTAGGTTGGTCGAGATCTCCTCCCCCCAGAAACTTCCAGAAAATGTATCTTGTCTATATTGGCATAATCAATCGGGTTCAATTTAACTTGTCATCACTGTTTTGTACTGTTTACGTTCTCCAATGCCTACGTGTTGGATATGAGGCGTTTTCCATTTGATTTGAGATTGGACATTTTTTTGCGGTGACTTTGGTCCTCACACCACTTTGGATTGTGTAACATTGTCCTCATGGGCTTGGCTATTTACACCATGTCATGTGTTGAAATGATATTAAGAATTGCAACATGAATATAGAATTGTGAACATTATGACAACCTGCTTTTTTTCTTTTCTTAATTTCCAACCTAGTAAACTAATAAAAATCTATATTGTACTTAA

Function

NR:

description
PREDICTED: importin subunit beta-1 isoform X2

GO: NA

KEGG:

id description
K14293 KPNB1, IPO1; importin subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557622.2 False 4973 mRNA 0.51 22 35002505 35023019
XM_021557623.2 True 4964 mRNA 0.51 22 35002505 35023019

Neighbor

gene id symbol gene type direction distance location
LOC110486197 LOC106607508 coding upstream 4089 34975115 ~ 34998416 (+)
LOC110485155 LOC106600806 coding upstream 55143 34937565 ~ 34947362 (+)
LOC110486195 utp18 coding upstream 69875 34919331 ~ 34932630 (+)
LOC110486194 LOC106607505 coding upstream 96457 34894771 ~ 34906048 (+)
LOC100136181 LOC100136181 coding upstream 158238 34782778 ~ 34844267 (+)
LOC100499595 socs7 coding downstream 2094 35025113 ~ 35039469 (+)
LOC110486200 LOC106607513 coding downstream 17516 35040535 ~ 35073933 (+)
LOC110486205 LOC106607518 coding downstream 174242 35197261 ~ 35237434 (+)
LOC110486207 LOC106600795 coding downstream 464906 35487925 ~ 35497727 (+)
LOC110486213 hexim coding downstream 598358 35621377 ~ 35623321 (+)
G1167984 NA non-coding upstream 2559 34999736 ~ 34999946 (+)
G1167972 NA non-coding upstream 29971 34972299 ~ 34972534 (+)
G1167969 NA non-coding upstream 51261 34950341 ~ 34951244 (+)
G1167961 NA non-coding upstream 66587 34935670 ~ 34935918 (+)
G1167960 LOC106584099 non-coding upstream 67619 34934672 ~ 34934886 (+)
G1168035 NA non-coding downstream 100407 35123426 ~ 35124568 (+)
G1168013 NA non-coding downstream 101606 35124625 ~ 35125327 (+)
G1168133 NA non-coding downstream 261006 35284025 ~ 35292246 (+)
G1168134 NA non-coding downstream 261752 35284771 ~ 35293174 (+)
G1168755 NA non-coding downstream 278573 35301592 ~ 35301815 (+)
LOC110486188 LOC107665142 other upstream 314855 34680909 ~ 34687670 (+)
G1166779 NA other upstream 1198840 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1753297 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1772022 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2280043 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 966837 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1144609 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1146877 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1315074 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1528002 36551021 ~ 36582092 (+)

Expression


Co-expression Network