LOC100499595 (socs7)


Basic Information

Item Value
gene id LOC100499595
gene name socs7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35025113 ~ 35039469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001195172.1
AGGGTCGCGGGCTCAGCTCATGGTGTTTCAGAACCTCCTTAGGACAAGCGACGGTGTTTTTGAATGCGGCCTCCAGCAACCTCCTGGCTTCCAGGTAAGTGAGGTTGATAAACAGGAAGCCAGTTCTGTCTGTGTCATGATGACCAGTGACAACAACATGGATGTGCAACACCAGAGGCTTCAGTGGCACCCCATTATGAAGCTGTCCAAGGTGGTCACAGATGCTGGTGACCTggctggagagggagatgggctCTGCCACCGGCACCGCCTGGTCACTGATGCCATGGACTGGCCTCCGCTCCTGGACAAGTCTCTCTGCTTCGACatcctggaccccaggaagacctGTTCAACAGGGGACaccaactaccaccaccacctggacGATACGGTGCTCAACCTGGCCCGGAGGCTGGGGGAGCTGGGCCAGGCCTCAGAGATGCTgctgaaggagaggggagagatgactCGTTGTTCCTGTCAGAGCATCCTGGCTTCGGCAACTGGGGGCATGGGCCCCGGAGAGGACCCTAGTGAAACCAGTGATGCCCTCCTGGTGCTGGAGGGCTTGGACTCGGAGGAAGTGGGGGAGCTGGGGATGGGCGGGGAGGAGTTTAAATGTGGTGTCCCCGGGCAGGAGGGCGAGACGGACACGGGGCAGGACAGACGGGGGGCTTTCTCCAGCGGTTCCCTCACGGGACTAATGAGGCAGGTACACAGGCTGGCCGGGGAGGTCCGTGCCTGTGGCCCCCAGGTGTGTCCTTCCCCGCTGGATTCCCTGGGCTCTGCTGCAGCCTTAAcatcttcctccctgtctctggccTCTAACACCACAGGCCAGCAGGTGGTGGAAGCCTCCGCCACCCTATCTGGCACCTTACCCTCAAAGGACCCTCCCAGCCAaacctcccagtccctgccccaaAGCAGGGCCACAACGCCGAAGTTAGGGGTGATGTTGAGAGCCGCCTCACCCTTAGTAGTAGAGGGGGCAGCAGGGGGCGAGAAGACGACCAGAGGGAAGTCCAGGAAAGGCTCTCTGAAGATCCGTCTGAGCAAACTATTCCGGACCAAGAGCAGCAGCGGCTCCAGTCGCCACCTGGACAAGAGGCCCTCGCtggcctcctccacctcctctgggGGAAGCCAGATGGATGTGTGGGGCTCTGGATCAACCAGCACGGACCAGGACACAGGGAGcAAACTCCAGCACTCCAGGCCCCAAAGTGCCTTCTCTCCGGTGGCCTTCGGTCCTGCCTTCACTGATACGTTCCTGCGGGGCCTCCCCCGGCCCATTCCGCTGCCTGGCGACGGCCAGAACCAGTCTCGGGTGGACCAGCGCCCCATGCTGTGCCCACTGAGCCGCCCCGATGCCAGCAGCTTTGCCACCAGCCTCCGGGAACTGGAAAAATGTGGCTGGTACTGGGGTCCTATGAACTGGGAGGATGCGGAGATGAAGCTGAAGGCCAAGCCAGACGGAGCGTTCCTGGTGAGGGACAGCTCTGACCCTCGGTACATCCTCAGCCTCAGCTTCCGCTCCCAGGGAGTCACCCACCACACACGCATGGAGCACTACAGAGGAACCTTCAGCCTCTGGTGTCACCCAAAGTTTGAGGACCGCTGTCATTCTGTGGTGGAGTTTATCGAACGAGCCATCATGCACTCCAAGAATGGAAAATTCCTCTACTTCCTGCGCTCACGGGTCCCAGGCCTCCCCCCGACCCCGGTCCAGCTACTCTACCCAGTGTCCCGCTTCAGCAGTGTCAAGTCCCTGCAGCACCTCTGTCGCTTCTGCATTCGCCAGCTGGTCCGCATAGACCACATCCAGGAGCTCCCCCTGCCCACGCCCCTCATAGTCTACCTGCGAAGGTTCTACTACTACGATCCTGAGGAGGAGATGTACATGTCAGTCAAGGAGATGGGGCGGGACACGACCACCCAACTGGCGACTGGCCAGCAGGAGTCTCAAACGTAGCATTTGGAGGATCATTGGATCAAGTTTGTTTTTTATACACGGGAACAGCTTACCTGAAGACTGATGGTGACTGTGCTTGGGGACAGTCTCGCTCAAACCCTCTTGTGCCAGACTGTGCACTAATCAGCGCTCTTGGTTGACTCGGTATCCGGAAGTCTGGGGCAGGGTTTTGGATGATCCACCCTCCTCCCTTTTTGATTGGCTCACAGAAACTGGAGGAGGGGCAGGGGATGAGGAAACTGCACCCACCCGGCCAGTGAGGAAGATATCTGACCGCGGGGCTGAACTGGAAGACCTGACTGACTACTTGCCATTGTGCTAACTAcagtaagccccccccccccagctaagACTAAAACGAGCGCACCCTTGCGCTGGAGGCTAAGACGATAGGCTGAGAGTCGAAGTATATGGAACCAAATCAGTTTTGGAAAATGATGCACTCGTCCTTTTTTTTTGTACCCCTGCTCTGAAAAGGTCTGGGAAAAGGGAGCGCTCGTTGTTTGGTATAACAAGCTGTCTATTGTATGTCAGCCAGGGCGGAGAAACTGTACCCACCTTTCTGATGTGATGCATTCTCAACTACAGAGAAATATCATTTTTTCCCTCTTAAAATATTTGGTTGCCAATGGTTGGATCGGCACCTTTTTTTGAATTGACTGCctgagctgtgtgtgtctgcgtgcctgtatgtgtgtgtaaatacTGTGTGTTGGCGTTAACTCTGCAATCCAACTGGAGTTCTCTTGCTATACTGTCATTGAGCAAATGCGTTACcagaacaaataataataaaaactgtTGATGGAATTTAAAA

Function

symbol description
socs7 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS7 (suppressor of cytokine signaling 7).

NR:

description
suppressor of cytokine signaling 7

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001195172.1 True 2795 mRNA 0.57 8 35025113 35039469

Neighbor

gene id symbol gene type direction distance location
LOC110486198 LOC106607509 coding upstream 2094 35002505 ~ 35023019 (+)
LOC118938632 NA coding upstream 5421 35019549 ~ 35019692 (+)
LOC118938634 NA coding upstream 6025 35018945 ~ 35019088 (+)
LOC118938633 NA coding upstream 6894 35018076 ~ 35018219 (+)
LOC110486197 LOC106607508 coding upstream 26697 34975115 ~ 34998416 (+)
LOC110486200 LOC106607513 coding downstream 1066 35040535 ~ 35073933 (+)
LOC110486205 LOC106607518 coding downstream 157792 35197261 ~ 35237434 (+)
LOC110486207 LOC106600795 coding downstream 448456 35487925 ~ 35497727 (+)
LOC110486213 hexim coding downstream 581908 35621377 ~ 35623321 (+)
trnac-gca-8 NA coding downstream 767698 35807167 ~ 35807238 (+)
G1167984 NA non-coding upstream 25167 34999736 ~ 34999946 (+)
G1167972 NA non-coding upstream 52579 34972299 ~ 34972534 (+)
G1167969 NA non-coding upstream 73869 34950341 ~ 34951244 (+)
G1167961 NA non-coding upstream 89195 34935670 ~ 34935918 (+)
G1167960 LOC106584099 non-coding upstream 90227 34934672 ~ 34934886 (+)
G1168035 NA non-coding downstream 83957 35123426 ~ 35124568 (+)
G1168013 NA non-coding downstream 85156 35124625 ~ 35125327 (+)
G1168133 NA non-coding downstream 244556 35284025 ~ 35292246 (+)
G1168134 NA non-coding downstream 245302 35284771 ~ 35293174 (+)
G1168755 NA non-coding downstream 262123 35301592 ~ 35301815 (+)
LOC110486188 LOC107665142 other upstream 337463 34680909 ~ 34687670 (+)
G1166779 NA other upstream 1221448 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1775905 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1794630 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2302651 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 950387 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1128159 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1130427 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1298624 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1511552 36551021 ~ 36582092 (+)

Expression


Co-expression Network