LOC110486209 (LOC100196171)


Basic Information

Item Value
gene id LOC110486209
gene name LOC100196171
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35537274 ~ 35547651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557638.2
TATAAAATCTGGGAGAATGAGCAGAGTTTTTTTTATCAACTATGGGCGTTGTTCTTTTTACGCTATTTAATAATCCCGATGTTCTTTGGCTGAAAACGACGGAGATACGACAAATACCATTAAACAACTGTGCTATCTGTCATGCGTGGGTGGGTTCCAAGTGGCCTGGAACCATTGCAGACCTTGTTCGCAAGCGGAAGTGTGTATCCACTTAAATTGAGAAGGTGCGCTGATTTAAAATTCGTAAAATGTGGATCATTGTAGCAATCATTTGTGCTGCTCTAGCTGCATTCGTATACAACTATGTGTTCCGTACGTCCGGACCAAATCCTTTTGATATCGACACTCGTGAGCCGCTTAAAccactggtcacccaaaagaaggAGAAAAACAAAGTTCTGAAGCAGGGTTTCTTGGCCAGTAAAGTACCCGAGAAACTAGATGCCATTGTCATTGGCAGTGGAATTGGTGGTCTTGGGCTGGCGGTGCTGCTGGCTAAGGTTGGAAAGCGGGTCCTGGTTCTGGAGCAGCATGATCGGGCCGGAGGCTGCTGCCACACCTTTACAGAGAAAGGCTTTGAGTTTGACGTGGGTATCCACTACATTGGGGACCTGTTGGAGCATAAGCCCTTCCGCTGTATGCTTGACCAGCTGACCAATGGTCAGCTGCAGTGGGAGCCGCTGGACAACCCATTTGACCAGGTGGTGCTGGGCCCTCCTGAGAACAGGCGCACCTATCCCATCTACAGCGGCAGGAACCGTTTCCCTGACGAGCTGAAGAAGTTCTTCCCTGGGGAGGAGGCGGCCATCGATGAGTACATGAGGCTGGTCAAGAAAGCAGGACGCAGCGTTTGGTTCCTGTGTCTGCTGAAGCTCGTTCCTGTCCCCCTGGCCAAGTTCCTGGTGTACACAGGCCTCGCCAATCGTCTGTCGTTCTTCTTCCGCATGGCGTCTCGCAGCGTGACTGAGGTGGTCAACGAACTGACTGAGAACAATGACCTCAGGGCCGTCTTCAGCTACGTCTTTGGCACTTACGGTAACATGCCCAAGGATGGCAGCTTCTCCATGCACAGCCTGCTGGTCTGCCACTACCTGACTGGCGCCTGGTACCCAATAGGAGGAGCCAGTGAGATCGCCTACCACATGATCCCTATCATTGAGAAAGCAGGGGGGGCCGTGCTCGTCCGCGCCCCAGTCAACCGCATCCTGTTCAACGACAACAAGGAGGCTATTGGTGTGAGCGTGATGAAGGGTCAGGAGGAGATCCATGTGCATGCTCCAATGGTCATCTCCAACGCCGGCATCTTCAACACCTACCAGAAGCTGCTGCCCAAGGAACTCCAGGCCATGCCAGCCATCCAGAAGCAGCTTGGTATGATGAAAAACGGGGCAGGAGGTCTGAGCATCTTCGTGGGCCTGACTGGAACCAAGGAGGACCTGGGCCTCAAAGCAGACAACTATTGGATCTTCAAAGAGCACAACCTGGATGAACTGGTTGTCACCTATCTGAAGGGAAACAGGGAGGAGTCAGCGAGAAGTGTGCCCCTCCTCTTTGTGGCCTCTCCATCAGCCAAAGATCCCACCTGGGAGGAACGATCACCAGGCAAGTCCACCCTGAGTCTGGTGAGCTTTGCTAACTATGAGTGGTTTGAGGAGTGGAAGGATGACAAGGTGACCAACAGAGGGACTGATTACAATGAGCTGAAGCAGATCTTCTGTGACTCGATTCTGGAGGTGGTGATGAGCGTCTTCCCCAAGATTACCAGGGACAAGGTTGAGTTCATAGAGGCTGGAACACCCATAACAAACACGCACTACATTGGAGCCCCTAAAGGGGAGATCTATGGAGCAGACCATGGCACAGCTCGTTTCAGCGCTGAGTGCAGTGCCACCGTGAGGCCCCAGACACCCCTGAAGAACCTCTACCTCACAGGTCAGgacgtgtttgtgtgtggctTTGCTGGTGCGCTGGCTGGGGCTCTCACCTGTGGTTCTGTCATCCTCAACCGTAACCTGCACCTGGATACCATTGCTCTGGCCAAGAAGACCAAACGTGTCGACACTAAGAAGTTGGAGTAACACAAGACTGACCACCTCCCTCAACCCGTTGTGGCTTCGGGTGAAGTTTcccttaggtacagatctaggataaacttcccctcccccaatccacATTAATGGGGAAAATgcctaactgacccaagatcaccatctaggggcaacttcacccagCTCACTGAAAGCTTTAATAACACAAGTCCAGGGGACAGGCTTCGATCTCTGGTCCTACAGTCAACGTGGTGAAAAGATCCCTCAAGACGGTTACtgtgtgtttgagggtgtgacTATTCTAATCAATGAGTGAAGagaactctgctctctctcactgttgAGGGAAAACACATTTGAAAGTCTATGAATCTTTCTGTGGATGCTATCTGCATCAGATCTGGGAAATGAAGTTTACAACCAATCGACCTTTGAAAATGATAGCCCAGGGATAGATAGCTTTttttttttccattgtgttttcaTAAATCAAGTGTGCAGATGGATGTGATTTAATACTAAATATTTTCACTCTTAATATATTGAGAACAAGTGTTGGGTGGAGTAGATTAAGTTACCAATACTTTTGATACCAGTACCAATAACCACTGCAAACATGTTAATAATTAATCATTACTCAATATACTGTGGATGGATAACAGTGGCTTCTGTCTGAGTTTTCAGACGGTCTTCCAACCAGCTATGCTAAATTCACCTATGCAATAAtgttgggtgaaaaaaaaagCCATGACGCAACAAAATTGTGAACCAGGTTTAAAAGCTCTATGCTGTAACTCTAACCACTGTAAATGTCTATTGCCTCCATTCGAACACAGATGTAAAGACTGGATTGTTTTGAATGAACATGCCTTGAGTTATTAAACATGGAATACAAAAATA

Function

NR:

description
putative all-trans-retinol 13,14-reductase

GO: NA

KEGG:

id description
K09516 RETSAT; all-trans-retinol 13,14-reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557638.2 True 2948 mRNA 0.49 11 35537274 35547651
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485156 LOC105007255 coding downstream 777 35534436 ~ 35536497 (-)
LOC110486206 LOC106607239 coding downstream 5238 35497549 ~ 35532036 (-)
trnac-gca-7 NA coding downstream 54219 35482984 ~ 35483055 (-)
LOC110486204 LOC106607517 coding downstream 354512 35170206 ~ 35182762 (-)
LOC110486203 LOC106607515 coding downstream 388938 35123432 ~ 35148336 (-)
LOC110486210 LOC106600792 coding upstream 3360 35551011 ~ 35556137 (-)
LOC110486212 LOC106607243 coding upstream 18079 35565730 ~ 35582423 (-)
LOC110486211 LOC106607244 coding upstream 37966 35583606 ~ 35680880 (-)
LOC110485157 LOC106607247 coding upstream 78399 35626050 ~ 35726231 (-)
lasp1 LOC106607249 coding upstream 198053 35745704 ~ 35787458 (-)
G1170535 NA non-coding downstream 10613 35526278 ~ 35526661 (-)
G1170534 NA non-coding downstream 12192 35524607 ~ 35525082 (-)
G1168835 NA non-coding downstream 56359 35393076 ~ 35480915 (-)
G1168834 NA non-coding downstream 58567 35381483 ~ 35478707 (-)
G1168832 NA non-coding downstream 62927 35372545 ~ 35474347 (-)
G1170546 NA non-coding upstream 16859 35564510 ~ 35572006 (-)
G1170611 NA non-coding upstream 135324 35682975 ~ 35683256 (-)
G1170612 NA non-coding upstream 135962 35683613 ~ 35683825 (-)
G1170616 NA non-coding upstream 141539 35689190 ~ 35689463 (-)
G1168629 NA other downstream 426263 35097452 ~ 35111011 (-)
G1168539 LOC106600802 other downstream 528977 35002513 ~ 35008297 (-)
G1168559 NA other downstream 586965 34949237 ~ 34950309 (-)
si:dkey-89b17.4 LOC106607502 other downstream 671878 34855625 ~ 34879901 (-)
G1170691 rl19 other upstream 314501 35862152 ~ 35864644 (-)
LOC110485158 LOC106607258 other upstream 451272 35995257 ~ 36000992 (-)
G1170811 NA other upstream 543111 36090762 ~ 36091417 (-)
G1170826 NA other upstream 562451 36110102 ~ 36110439 (-)
G1170998 NA other upstream 945438 36493089 ~ 36493524 (-)

Expression

LOC110486209(LOC100196171) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110486209(LOC100196171) Expression in each Bioproject

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LOC110486209(LOC100196171) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network