LOC110486217 (LOC106600984)


Basic Information

Item Value
gene id LOC110486217
gene name LOC106600984
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35814277 ~ 35819297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557649.2
CCTTTTTCCGTGACTCGCTCCAgtcaccccccaaaaatctagCTAGCGAAGTAAAAGAATGCAATGCCTGTTTTGATCTCAGAATCAATTTGGTATCGATAGACAACACATGGGCACATATCTAGTTTTGTTTGTGTCGATGAAcgtaaaaataataattttctaGACTGTGCTACCTAATGTTTTCCAGGTAGCTGGGATTAAAAGTAACGAAGCACAGCACAGGGTTAGTTATCAGTAcagtaatttagctagctaacgttagctcgaaTTGTGGGGTGCCTAttgtgttagctagccagctaacgttaacgGCTTTTCTGATTTGCTCTTGTTGGAAATATTTTCATACTTCTTTGAGTTGCTTTCATTCTCATCACCGGTGGATATGGGACTACTTTTTACCAAGCTGATGACTGTCTTCGGAGACAGAGAGCACAAAGTGATCATAGTGGGCCTGGACAATGCTGGGAAGACCACTATCCTCTACCAATTCCTTACCAAAGAGGCGGTCCACACCTCCCCCACCATTGGCAGTAACGTAGAGGAGATCTCTGTACGCAAGACCCGCTTCCTGGTGTGGGACGTCGGAGGCCAGGAAAGCCTGAGAGCCAGCTGGAACTCCTACTACTGCAACACAGAGATTGTTATTCTGGTTGTGGACAGCACAGACCGTGAGCGCCTAACTCTGAACAAAGATGAACTTCACCGCATGCTTGAACATGAGGACCTACAGAATGCTGCGATTCTAGTTCTGGCCAACAAGCAGGACATGAAGGACTCTATGACAGTGGCAGAGATCTCCCAGTGCCTCACCCTCAGCTCCATCACAGCCCACTCCTGGCATGTACAGGCCTGCTGTGCCCTCACAGGGGAGGGaCTACCTGCCAGTCTGGACTGGATGAGGTCTCGTGTCCTGGCCAGTTAGAACTCCTTCTGTGGGCTCATCCCAATTGGAACCAGGACAGCTATCCTTTGACCCAACAAACACAACCTCATAGACATTGCAGCTAAAGCCACAGTGCCCAGATCAGGACCTCCACTATCTGTTGTGACGCTGCCCCTCTGAGCCCCAGGGCTGGCCCCAGACCTGCCCTGTCACCCGCATGCCTTACCCAGGACTTACTGTGTCTGCAAGGGCTGACCAGGGTCCAGATCTGCATCGCGATAGAGGAGGCCTGGAGGAACCTGGCAGAACCTCAACTAGGCATGCCAGGGTATGCCATTGTGCATTTGCGTtagcatgggtgtgtgtgttatagtgtgtgagACTCTGTTCTAGATGCCCACCATGTTTACATAAGAATCCTACCTGTCAGACCTGATTCCATGAGGGTGACACAGTATGTCCCACATAAGCTGAATAGGGACCTATCTAAGTATTTAAGCCTGCTGTCCTCATGAACTCCACAGAGATTGAATGAGAGGTTGCATTGGATTTCTTTAACATACAGTTTTGTACCTCTGACTTGAAGAAAGCCACAGTACACATGTTAAGAGGCCAGACCGAATGGGGATCAGACTGGTGCTCAGTCTTCTAAGCTATCAATGCACAAATTACTTGGAAGTATTTATATCAAAGAAGGAACAAGGTTGTTTGCTTGACAGTGAAAAATAGCATCATGATTTCTGTTAAAAAAGCAAGATGACAAACAAGTATTGTCTGATTTAAAACAGGTTAATCATGTGTATTTttgtatacatatacagtattttacGGTGTACAAAATATTTTTTGTACAAATAAATGTTATTATTGATAAA
>XM_036940922.1
GCCTTTTTCCGTGACTCGCTCCAgtcaccccccaaaaatctagCTAGCGAAGTAAAAGAATGCAATGCCTGTTTTGATCTCAGAATCAATTTGGTATCGATAGACAACACATGGGCACATATCTAGTTTTGTTTGTGTCGATGAAcgtaaaaataataattttctaGACTGTGCTACCTAATGTTTTCCAGGTAGCTGGGATTAAAAGTAACGAAGCACAGCACAGGGTTAGTTATCAGTAcagtaatttagctagctaacgttagctcgaaTTGTGGGGTGCCTAttgtgttagctagccagctaacgttaacgGCTTTTCTGATTTGCTCTTGTTGGAAATATTTTCATACTTCTTTGAGTTGCTTTCATTCTCATCACCGGTGGATATGGGACTACTTTTTACCAAGCTGATGACTGTCTTCGGAGACAGAGAGCACAAAGTGATCATAGTGGGCCTGGACAATGCTGGGAAGACCACTATCCTCTACCAATTCCTTACCAAAGAGGCGGTCCACACCTCCCCCACCATTGGCAGTAACGTAGAGGAGATCTCTGTACGCAAGACCCGCTTCCTGGTGTGGGACGTCGGAGGCCAGGAAAGCCTGAGAGCCAGCTGGAACTCCTACTACTGCAACACAGAGGACCTACAGAATGCTGCGATTCTAGTTCTGGCCAACAAGCAGGACATGAAGGACTCTATGACAGTGGCAGAGATCTCCCAGTGCCTCACCCTCAGCTCCATCACAGCCCACTCCTGGCATGTACAGGCCTGCTGTGCCCTCACAGGGGAGGGaCTACCTGCCAGTCTGGACTGGATGAGGTCTCGTGTCCTGGCCAGTTAGAACTCCTTCTGTGGGCTCATCCCAATTGGAACCAGGACAGCTATCCTTTGACCCAACAAACACAACCTCATAGACATTGCAGCTAAAGCCACAGTGCCCAGATCAGGACCTCCACTATCTGTTGTGACGCTGCCCCTCTGAGCCCCAGGGCTGGCCCCAGACCTGCCCTGTCACCCGCATGCCTTACCCAGGACTTACTGTGTCTGCAAGGGCTGACCAGGGTCCAGATCTGCATCGCGATAGAGGAGGCCTGGAGGAACCTGGCAGAACCTCAACTAGGCATGCCAGGGTATGCCATTGTGCATTTGCGTtagcatgggtgtgtgtgttatagtgtgtgagACTCTGTTCTAGATGCCCACCATGTTTACATAAGAATCCTACCTGTCAGACCTGATTCCATGAGGGTGACACAGTATGTCCCACATAAGCTGAATAGGGACCTATCTAAGTATTTAAGCCTGCTGTCCTCATGAACTCCACAGAGATTGAATGAGAGGTTGCATTGGATTTCTTTAACATACAGTTTTGTACCTCTGACTTGAAGAAAGCCACAGTACACATGTTAAGAGGCCAGACCGAATGGGGATCAGACTGGTGCTCAGTCTTCTAAGCTATCAATGCACAAATTACTTGGAAGTATTTATATCAAAGAAGGAACAAGGTTGTTTGCTTGACAGTGAAAAATAGCATCATGATTTCTGTTAAAAAAGCAAGATGACAAACAAGTATTGTCTGATTTAAAACAGGTTAATCATGTGTATTTttgtatacatatacagtattttacGGTGTACAAAATATTTTTTGTACAAATAAATGTTATTATTGATAAA

Function

NR:

description
ADP-ribosylation factor-like protein 5C isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557649.2 False 1764 mRNA 0.46 6 35814277 35819296
XM_036940922.1 True 1681 mRNA 0.46 5 35814277 35819297

Neighbor

gene id symbol gene type direction distance location
LOC110486215 LOC106607251 coding downstream 9213 35789454 ~ 35805064 (-)
lasp1 LOC106607249 coding downstream 26819 35745704 ~ 35787458 (-)
LOC110485157 LOC106607247 coding downstream 88046 35626050 ~ 35726231 (-)
LOC110486211 LOC106607244 coding downstream 197039 35583606 ~ 35680880 (-)
LOC110486212 LOC106607243 coding downstream 231854 35565730 ~ 35582423 (-)
LOC118938069 LOC106607229 coding upstream 3439 35822736 ~ 35825104 (-)
cacnb1 LOC106607253 coding upstream 7445 35826742 ~ 35856636 (-)
LOC110486220 LOC106607256 coding upstream 99635 35918932 ~ 35974113 (-)
eftud2 LOC106607257 coding upstream 159108 35978405 ~ 35992660 (-)
LOC110485158 LOC106607258 coding upstream 175960 35995257 ~ 36000992 (-)
G1170671 NA non-coding downstream 7717 35806355 ~ 35806560 (-)
G1170590 NA non-coding downstream 7963 35805639 ~ 35806314 (-)
G1170578 NA non-coding downstream 68847 35743956 ~ 35745430 (-)
G1170628 NA non-coding downstream 93537 35700471 ~ 35720740 (-)
G1170627 NA non-coding downstream 94134 35719703 ~ 35720143 (-)
G1170679 NA non-coding upstream 1045 35820342 ~ 35820616 (-)
G1170697 NA non-coding upstream 41059 35860356 ~ 35860860 (-)
G1170691 rl19 non-coding upstream 43630 35862152 ~ 35864644 (-)
G1170698 NA non-coding upstream 46496 35865793 ~ 35866058 (-)
G1170699 NA non-coding upstream 47728 35867025 ~ 35867257 (-)
LOC110486204 LOC106607517 other downstream 631630 35170206 ~ 35182762 (-)
G1168629 NA other downstream 703266 35097452 ~ 35111011 (-)
G1168539 LOC106600802 other downstream 805980 35002513 ~ 35008297 (-)
G1168559 NA other downstream 863968 34949237 ~ 34950309 (-)
si:dkey-89b17.4 LOC106607502 other downstream 948881 34855625 ~ 34879901 (-)
G1170811 NA other upstream 271465 36090762 ~ 36091417 (-)
G1170826 NA other upstream 290805 36110102 ~ 36110439 (-)
G1170998 NA other upstream 673792 36493089 ~ 36493524 (-)

Expression


Co-expression Network