LOC110486219 (rl19)


Basic Information

Item Value
gene id LOC110486219
gene name rl19
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35862093 ~ 35864645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557658.2
tctCCTGTAGTTTTAATGGTAGTGCCCTGTCCGTCTCGCAACCCTTCCTTTTTCTATCGCAATAGCAGCCATGAGCATGCTCAGGCTTCAAAAGAGGCTTGCCTCCAGCGTCCTACGCTGTGGCAAGAAGAAGGTATGGCTGGACCCCAACGAGACCAATGAGATTGCTAACGCCAACTCCCGCCAGCAGATCCGTAAACTGGTAAAGGATGGTCTTATCATCCGCAAGCCTGTCACGGTGCACTCTCGCGCCCGCTGCCGCAAGAACACGCTGGCACGTCGCAAGGGAAGGCACACAGGAATTGGTAAGAGAAAGGGTACAGCCAATGCCCGTATGCCAGAGAAGCTGTCCTGGATGCGTCGCATGAGAATCCTGCGTCGTCTTCTCCGTCGATACAGGGAGTCCCATAAGATTGACAGGCACATGTACCACAGCCTCTACCTTAAGGTGAAGGGTAACGTGTTCAAGAACAAGCGTATCCTCATGGAGCACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTTCTGTGTGACCAGGCTGAGGCCCGTCGTTCCAAGACAAAGGAGGCCCGTAAGCGCAGAGAGGAGCGCCTGGCAGCAAAGAAAGAGGAAATCATCAAGACCCTGTCAAAGGAGGAGGAGACCACCAAGAAGTAAACAGCTTCTTGTCCCTGGCATGCACCTGCTGTACCTCGCTCTGTCGAGTGCTGACAATAAAGTGTATGAAAGACACAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02885 RP-L19e, RPL19; large subunit ribosomal protein L19e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557658.2 True 742 mRNA 0.53 6 35862093 35864645

Neighbor

gene id symbol gene type direction distance location
trnac-gca-9 NA coding upstream 49868 35812154 ~ 35812225 (+)
trnac-gca-8 NA coding upstream 54855 35807167 ~ 35807238 (+)
LOC110486213 hexim coding upstream 238772 35621377 ~ 35623321 (+)
LOC110486207 LOC106600795 coding upstream 364366 35487925 ~ 35497727 (+)
LOC110486205 LOC106607518 coding upstream 624659 35197261 ~ 35237434 (+)
st8sia6 LOC106607255 coding downstream 36187 35900832 ~ 35909243 (+)
LOC110486225 LOC106607261 coding downstream 177126 36041771 ~ 36052964 (+)
LOC110486228 LOC106607263 coding downstream 266923 36131568 ~ 36167388 (+)
LOC110486232 rprml coding downstream 473421 36338066 ~ 36339755 (+)
LOC110486233 LOC106607267 coding downstream 498910 36363555 ~ 36368288 (+)
G1169045 NA non-coding upstream 1371 35860410 ~ 35860722 (+)
G1169025 NA non-coding upstream 41533 35820352 ~ 35820560 (+)
G1169018 NA non-coding upstream 56145 35805442 ~ 35805948 (+)
G1168987 NA non-coding upstream 63643 35753817 ~ 35798450 (+)
G1168974 NA non-coding upstream 112683 35726325 ~ 35749410 (+)
G1169047 NA non-coding downstream 2965 35867610 ~ 35867817 (+)
G1169048 NA non-coding downstream 3602 35868247 ~ 35868500 (+)
G1169050 NA non-coding downstream 4762 35869407 ~ 35869742 (+)
G1169062 NA non-coding downstream 8664 35873309 ~ 35873530 (+)
G1169070 NA non-coding downstream 18484 35883129 ~ 35883383 (+)
LOC110486188 LOC107665142 other upstream 1174443 34680909 ~ 34687670 (+)
G1166779 NA other upstream 2058428 33790640 ~ 33803665 (+)
G1166318 NA other upstream 2612885 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 2631610 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 3139631 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 125211 35989856 ~ 35992600 (+)
G1169207 NA other downstream 302983 36167628 ~ 36168331 (+)
G1169208 NA other downstream 305251 36169896 ~ 36171571 (+)
LOC110486241 LOC106607273 other downstream 686376 36551021 ~ 36582092 (+)

Expression


Co-expression Network