LOC110486228 (LOC106607263)


Basic Information

Item Value
gene id LOC110486228
gene name LOC106607263
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36131568 ~ 36167388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940932.1
GAGTTTGAAGGGAGGGACCCGCGTGCTGCTGCTGAGTGCTGAGGCGAGCAAAGCGGGTGTAAACCGGCATAGAGAGGATAGCTAGTGTAACGGTGGGAACCGAGGGCTTCACGGGGTGGACAGGGGAGGACAACCGGGGGAGGACACATAGTAGGGCGCGCCACAACCGGGGCATGTACCTGCTGGTTTTTCCTTGAGTTCCTTATATCCACATCGGGTGGTGAATGAAACCGATCCGCGTCCAGAACAGACACACTGACAAAGATGGAAAGTCAAGGCAGCCGCTGTAAGATCGTGGTGGTCGGAGATACGCAATGTGGTAAAACGGCGCTCCTACATGTTTTTGCGAAGGACTGCTATCCCGAGAACTATGTCCCCACCGTTTTTGAAAACTACACGGCCAGTTTTGAAATCGACAAACAGAGGATTGAGTTGAACATGTGGGACACGTCAGGTTCCTCGTATTATGACAACGTGCGGCCGTTGGCCTATCCTGACTCAGACGCCGTGCTCGTCTGCTTTGACATCAGTCGCCCAGAGACCCTGGACAGTGTCCTGAAGAAGTGGCAGGGGGAGACCCAGGAGTTCTGTCCCAATGCCAAGGTGGTTCTGGTGGGTTGTAAGCTGGACATGAGGACCGACGTGGGCACCCTGAGAGAGCTGTCCAAGCAACGCCTCATCCCCGTCACACACGAACAGGGTAGTGGGTTGGCCCGTCAGATAGGTGCGGTAGCCTACGTGGAGTGCACCTCCAAGGTGTCGGAGAACAGCGTACGGGACGTGTTCCACATCACCACGCTGGCGTCTGTGCGGCGGCCACACAAGCCTCAGCTGAAACGCAGCAGCTCCCGCCGGGGCCTCAAACGGGTGTCCCAGCTGCCCCTGCCCCCCCTGCCTGGTCGGACTGATACCCTGGATCCTGCCCCTGCCATGCAGAAGGACCGGGCCAAGAGCTGTGTGCTCATGTAGAGACCCACCaagacaaatatatatatatatacagtacagtatgatacACAGAAATATATGACAGACAGAGGAACTCTATTTATTGGTTTTGTTTTGTtcaattttatttaattttttaaaaagaAATCCTCTATTATTCTCGTTTTGCACTGCTGAGGAACAaggacaaaaaaagaaaaaaatatgcttttgtgtgtgtttgcgaaTCTTTTTGGAGCtgtttacattattattatttttttttgacTGATGGACGGTGAAGTGGACTGGTTTTCTCGAGGCAAAGTCtcagggtggagagaggagaggaggggaatagGAAGTGCTGCATGGTCCTGGGGTAGGGTTTGTGGAGTGCACTGACTGGGGGGGATCAATCCTTCACACAAGGACGGCACAACAGCCATCTTTACTGGACGGCTGGAGTAGAAGACTTTCATTCTGTGGAGAAGGTAGTGGAGGAGTTGGATCAGGAAGATGGAATAAGAAACTTCTCACTGGACAATGGACATGGTTGCTTTTGCTATGCTATATTGTGATGATACTTCCTGTTGCCATGTGTGAATAGAAATGTGTAAAAACAAAAATGCTGAAAAGGGACTCTTATTGAGTGGGTAAATGATGGGAGTAGGTCAAACAGACAGAACTACAGAAGTCAGTTGGACGTTGCTTTTGTAACCAGAGTTAACATGAAGAATGTGCGGAGTTTTCCTCAGATTATTCGAACCACAAGTGCTTTTTAGAAAAAAGTCACTTTGCATATCTGTTTTTGTAATAATTTAACACTATTCTATGCGTCAATTCCGATCATGTCAATTTGATTCAATGAAACTATTGCTGTTGTCGTTATGTTAAGATGTTACTTTGTGGGAAATTTAGCGGTAAAATGTTAGGGCTATTTTACTGTATTTTCACATACTCTAAAAGTCTAAAATAAAGCAACAGCTTGACTGTAGGGAGAAGAGACTTCCTCTCTGA

Function

NR:

description
rho-related GTP-binding protein RhoN-like isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07858 RND2; Rho family GTPase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940932.1 True 1947 mRNA 0.48 5 36131568 36167388

Neighbor

gene id symbol gene type direction distance location
LOC110486225 LOC106607261 coding upstream 83760 36041771 ~ 36052964 (+)
st8sia6 LOC106607255 coding upstream 222325 35900832 ~ 35909243 (+)
LOC110486219 rl19 coding upstream 266923 35862093 ~ 35864645 (+)
LOC118938606 NA coding upstream 267564 35863923 ~ 35864004 (+)
LOC118938605 NA coding upstream 268584 35862905 ~ 35862984 (+)
LOC110486232 rprml coding downstream 170678 36338066 ~ 36339755 (+)
LOC110486233 LOC106607267 coding downstream 196167 36363555 ~ 36368288 (+)
LOC118938276 LOC106607270 coding downstream 289966 36457354 ~ 36460939 (+)
LOC110486240 LOC106601006 coding downstream 358251 36525639 ~ 36547943 (+)
LOC110486241 LOC106607273 coding downstream 393942 36551021 ~ 36582092 (+)
G1169194 NA non-coding upstream 19136 36112232 ~ 36112432 (+)
G1169192 NA non-coding upstream 21093 36110249 ~ 36110475 (+)
G1169185 NA non-coding upstream 30338 36100951 ~ 36101230 (+)
G1169182 NA non-coding upstream 36741 36094608 ~ 36094827 (+)
G1169160 NA non-coding upstream 78140 36053078 ~ 36053428 (+)
G1169247 NA non-coding downstream 42097 36209485 ~ 36210121 (+)
G1169286 NA non-coding downstream 99082 36266470 ~ 36266905 (+)
G1169315 NA non-coding downstream 139068 36306456 ~ 36306664 (+)
G1169366 LOC106607269 non-coding downstream 206178 36373566 ~ 36425661 (+)
G1169444 NA non-coding downstream 335348 36502736 ~ 36503327 (+)
G1169121 LOC106607257 other upstream 138968 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1443918 34680909 ~ 34687670 (+)
G1166779 NA other upstream 2327903 33790640 ~ 33803665 (+)
G1166318 NA other upstream 2882360 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 2901085 33001356 ~ 33230495 (+)
G1169207 NA other downstream 240 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2508 36169896 ~ 36171571 (+)
G1169532 LOC106607276 other downstream 502971 36670359 ~ 36671403 (+)

Expression


Co-expression Network