LOC110486232 (rprml)


Basic Information

Item Value
gene id LOC110486232
gene name rprml
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36338066 ~ 36339755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557676.2
ACGAAAGCGCACTCAAGCGGGCACATGTGCGCATGCAGGGCAGTCTTACGTACAGATTTACACCTCCTTCGAGATGTCCAAGGGGACCCGCTTGAGAGGTTCGAGCTACGTAGAAGTTGTGTTCAGTTTATTACTTTGACTCGCAAGTATGATGCTGAATAGGGCATCTGGTTAGGGTTGGGATAGTTTCTCTCCGCTGACACGCACCTACATATCAGCTTTTGGCCGTGCTGCTATTATCGAATTTAAAAGAAGGTTATACATTTCTCATTTGGTTTTTACTTTGGTTTGTTTTCCCAGTCACATGACGCAAATTGAAACTGCGAGCCAGGTTTTAgccgtgagtgtgtgtctgtggaacCGCGTGCGCCCATATCTGCCAAGCGCTGTCAGATTGACATCCACGGAGACATGAACAGCTCCTTCTTCGACCAAGCCCAGGGCGTACTATTCAACAGGAGCCAAGTCCTCGCTGGTACTCTGGCGAACTGCTGCAACGCGACCGACGTGGCAACCAGTGACGGCGGCTCGCTGGCGCTACCTCCGGACGAGCGGAAACTCTTCATCAGTCGCGTCGTACAGATCGCCGTCCTGTGCGTACTGTCGCTCACCGTCATGTTTGGTATCTTTTGCCTCGGCTGCAACCTCATGATCAAATCAGAGAGTATGATTAACTTTATGGTGAAGGACCGGAGACCTTCCAAAGACGTAGAGGCGCCGGGGATGATAGGACTCAGCTAGTCTCTGGCGCCGGGATGGAGAATGGTGTGTAGCAGCGCGCCACGGACTCATAGCCTCACCACGCTGTATTTTGGGCAGCACGCTGATATGCAATGCGTTTGATTTCCTTACGAAATATGTTTGCCAATAAAGACTGCAATTGCAGTCAAGCGCGGACAATTCCTCACATCAAAAGTTCAAGGAGGACAAGGAATGCATCGTTGTTTACGCATAGGCTGTTGGATATGGTTTTGTTTTTGACTGTCAACTTGAACAAAGTAATGGACTCTTGTGATATAAGTGTTTACACGTTGTTACCTCAAATTCTATTTGCAAAAGTCGATATTTCATAATTGTTCAAGTAACAAAACTAACTCGTCAGCAACTTTACGCATGCAGATGTTATGTTTTTTTCCCTTTCCAGTTCTGACAGTAGGCTGTGGATGTTTTGGATGTGGGAATTctctgaaaatatatttttcttgGTCCCGTTTCTTAGTAGCATGTCGGGCAAACACCCAAGGTGCTGGGATCTTGCATGTTTAACAAACCCCATCACTGCTTCAGATAGTGTTTTCTTGTTCAGTTCCAGCATGCACGCGGCTTGGTCTGTAGCCTACCGTACAAGGTGGTATTTGGACCTACTGTTTTTGCACTTTTTGAAAGCACCTGATGCTGCATGATTTTTGTACCACGATGAAACTTGAATGAAAAGTGCAGCATGCTACGAATAAACGTGACGTTGTcgtatctcttcattgatatccATTGTACATAATGTACCTAGACTACCTGTTGCAGTAGATTCGATTTATTAATGTATGGCATAGGCCTATCGCACAAAGCAGCATAAATATGCAGTATAAATTAAACAAATGAATTACATTTAAATGTGATCGAGGATCTTGTGCatgttatactgtactgtaataccaataacagtaacaacaacaataataatataagATAA
>TU1333509
TGCGCATGCAGGGCAGTCTTACGTACAGATTTACACCTCCTTCGAGATGTCCAAGGGGACCCGCTTGAGAGGTTCGAGCTACGTAGAAGTTGTGTTCAGTTTATTACTTTGACTCGCAAGTATGATGCTGAATAGGGCATCTGGTTAGGGTTGGGATAGTTTCTGCTTTTGGCCGTGCTGCTATTATCGAATTTAAAAGAAGGTTATACATTTCTCATTTGGTTTTTACTTTGGTTTGTTTTCCCAGTCACATGACGCAAATTGAAACTGCGAGCCAGGTTTTAgccgtgagtgtgtgtctgtggaacCGCGTGCGCCCATATCTGCCAAGCGCTGTCAGATTGACATCCACGGAGACATGAACAGCTCCTTCTTCGACCAAGCCCAGGGCGTACTATTCAACAGGAGCCAAGTCCTCGCTGGTACTCTGGCGAACTGCTGCAACGCGACCGACGTGGCAACCAGTGACGGCGGCTCGCTGGCGCTACCTCCGGACGAGCGGAAACTCTTCATCAGTCGCGTCGTACAGATCGCCGTCCTGTGCGTACTGTCGCTCACCGTCATGTTTGGTATCTTTTGCCTCGGCTGCAACCTCATGATCAAATCAGAGAGTATGATTAACTTTATGGTGAAGGACCGGAGACCTTCCAAAGACGTAGAGGCGCCGGGGATGATAGGACTCAGCTAGTCTCTGGCGCCGGGATGGAGAATGGTGTGTAGCAGCGCGCCACGGACTCATAGCCTCACCACGCTGTATTTTGGGCAGCACGCTGATATGCAATGCGTTTGATTTCCTTACGAAATATGTTTGCCAATAAAGACTGCAATTGCAGTCAAGCGCGGACAATTCCTCACATCAAAAGTTCAAGGAGGACAAGGAATGCATCGTTGTTTACGCATAGGCTGTTGGATATGGTTTTGTTTTTGACTGTCAACTTGAACAAAGTAATGGACTCTTGTGATATAAGTGTTTACACGTTGTTACCTCAAATTCTATTTGCAAAAGTCGATATTTCATAATTGTTCAAGTAACAAAACTAACTCGTCAGCAACTTTACGCATGCAGATGTTATGTTTTTTTCCCTTTCCAGTTCTGACAGTAGGCTGTGGATGTTTTGGATGTGGGAATTctctgaaaatatatttttcttgGTCCCGTTTCTTAGTAGCATGTCGGGCAAACACCCAAGGTGCTGGGATCTTGCATGTTTAACAAACCCCATCACTGCTTCAGATAG

Function

symbol description
rprml Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood vessel; brain; intestine; notochord; and trigeminal ganglion. Orthologous to human RPRML (reprimo like).

NR:

description
reprimo-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557676.2 False 1690 mRNA 0.45 1 36338066 36339755
TU1333509 True 1238 TUCP 0.47 2 36338093 36339356

Neighbor

gene id symbol gene type direction distance location
LOC110486228 LOC106607263 coding upstream 170678 36131568 ~ 36167388 (+)
LOC110486225 LOC106607261 coding upstream 290258 36041771 ~ 36052964 (+)
st8sia6 LOC106607255 coding upstream 428823 35900832 ~ 35909243 (+)
LOC110486219 rl19 coding upstream 473421 35862093 ~ 35864645 (+)
LOC110486233 LOC106607267 coding downstream 23800 36363555 ~ 36368288 (+)
LOC118938276 LOC106607270 coding downstream 117599 36457354 ~ 36460939 (+)
LOC110486240 LOC106601006 coding downstream 185884 36525639 ~ 36547943 (+)
LOC110486241 LOC106607273 coding downstream 221575 36551021 ~ 36582092 (+)
LOC110486244 LOC106607274 coding downstream 292691 36632446 ~ 36664344 (+)
G1169315 NA non-coding upstream 31402 36306456 ~ 36306664 (+)
G1169286 NA non-coding upstream 71161 36266470 ~ 36266905 (+)
G1169247 NA non-coding upstream 127945 36209485 ~ 36210121 (+)
G1169194 NA non-coding upstream 225634 36112232 ~ 36112432 (+)
G1169192 NA non-coding upstream 227591 36110249 ~ 36110475 (+)
G1169366 LOC106607269 non-coding downstream 33811 36373566 ~ 36425661 (+)
G1169444 NA non-coding downstream 162981 36502736 ~ 36503327 (+)
G1169371 NA non-coding downstream 165875 36505630 ~ 36507309 (+)
G1169489 NA non-coding downstream 229910 36569665 ~ 36569882 (+)
G1169208 NA other upstream 166495 36169896 ~ 36171571 (+)
G1169207 NA other upstream 169735 36167628 ~ 36168331 (+)
G1169121 LOC106607257 other upstream 345466 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1650416 34680909 ~ 34687670 (+)
G1166779 NA other upstream 2534401 33790640 ~ 33803665 (+)
G1169532 LOC106607276 other downstream 330604 36670359 ~ 36671403 (+)
G1169542 NA other downstream 362517 36702272 ~ 36703736 (+)
G1169468 hsp70b other downstream 431033 36743291 ~ 36819540 (+)
G1169472 NA other downstream 445057 36784812 ~ 36812201 (+)
LOC118938606 NA coding upstream 474089 35863923 ~ 35864004 (+)
LOC118938605 NA coding upstream 475109 35862905 ~ 35862984 (+)

Expression


Co-expression Network