LOC110486233 (LOC106607267)


Basic Information

Item Value
gene id LOC110486233
gene name LOC106607267
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36363555 ~ 36368288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557677.2
GATGGCGCACACATTGATTAATTACACCGTTTGAAATGCTGCGGTGGGGGCGGATGGGATCCGCGTGGGAGACAGTGACAGCATGTAGGAgaaggaaagaagagagaaacaCTGAGGAGGAGAACGGAGATAGCGAGAGTCAGAGCGAAAAACTCGTCAAATGAAAGCTGCAATTAGTGGTCTATGAAGTGAAAGAGAGCTGGCCCAGGCTTATCCCAGGTGTCCGTAACTTAGCCCACTCAATTTAGAGTGAGAGACCTACGTAGCGGCGGCCCACCTGTTCCCTGCCCCTCCCGTCAACATTGATGCATGCGACCATATGGATTTGCCAAGCTTATTGTCTAGGGGCGGGAAATCCCAATTATAGGCTACTTTTGTGAATTCACTCACTTCGCTACATGGAAGACGGCTACCTTTGTGCCACAGCTGTCAAAATCAATTCAAGTGTGACCACCTCATTTGCTCTTTTAGAAACGTTTAGAACTCGATTATATCATATAGGCCTAAATGCTAAGAAAATAGATGTGATAGAGAGAGTGACTAATTAGTCCTAGTTTAAATATCCCATAGCAGCATAATCATTGCAGTAAGTGACGCACCAGCCTATGTGTGCGCAACAACCTGCGCATATTTCTCGCACTTGTTGTTTGCGTTTTGAAGCCTTGGCAACCCAACTGGTGAGTGTATACTCCAAGCCTGGGTTGGATCAAAACAAGGTTTATCTTCAGTCACTGTTTAcagctctctctttttttttttaccgacATATGAAACTCAATGGCAGGGAGAGATGATACTGACCCACAGTTTCAGCAGTGGAACCAGGACGCACAGAATGTGCAGATAATTCAACAGCCTGCTTCCCAGCAGCCCACAACCATCCTCCAGCAGCTCCCTGCTGCTGTGTCATCTCCCACTCCCTCCATCCGGCCAGGACACGTTAAGCAGGACCTGGTGGAGCTGATGATGATCCAAAATGCTCAGATGCACCAGGTCATCATGAACAACATGACCATGTCAGCCCTCAGCTCATTTGGCCATTCCCAGTTCCACCCTCCGTCTACCTCTGAGGAGGAGGATCCAGAGGTGTACCACTACCATTACCAGCCTACCCCGGCCTACCTGCCCTACCCAACCTGGttgcctccacccctgcctcacCCTAGCCTGGTCTACCGCAACACCCATGAACCCCTAGAGCTAGCACCCtcaccacacagagacaccacCAGGAGGGCGGtcccacctcctcccccacccAGCGCTACCAGGACTGTGGGGGCTGACGTCCCTCCAGCAACAGATTACTATGATGCTGCGGAGAGAAGACAGTGACAAGAAGAGCAGAAATCTACAGCATCCATTCATCGTTAGCCTTGTTTTTACAAGATGGAATCCTTCTAAACGTGTCACAGTAAACGGAACTACATTTCAGAGGCGATGCAGTTTTGTTCTTCATAATAGTTATTCATAATATCATGTTTCTGTATCTTATAATGCTCACCATagttcagtttttttttctccgtgtTTTAATGTGTGTCTTTTTAGATTTGTTATTTCAAGTAAAGAAAAGGCCAAGATCATCATTGTTCAGCATTGTTCAATGTTTTTAAGCTCACTTCCAGACTTGtgctgtagctcagttggtagagcatggcacttctaacactagggttgtgggtttgaatcCCGACACCAACCATACATAAGATGTATGatgtatgatatgatatgatgtatgTATAAGTCGCTTTGGATATATGCCTGCTAAATGACATATATTATAGTCGTTTTggccttgtttttttttacatgcatTACACAAAATACCCAGCAGGGTGCAGCATCATCTTTGTAATGACAAAGTCAGAGGGCGCTTTTCTATGACTGGGAGTTAGTTTTtagcaggttgacatttattgttGTGAATCTTgatctggaggcagctctgcagagagGTCACAAGCTAACACAGACAGAAAGTCATAAAATCAGTTTTtaaacctaacattaaccacactgctaaccctaatgcctaaccttaaattaagaccagaAAGCACATTTTTGTATTCATACATGTTTGCGATttagacaattttgactttgcaactGGCCCATCTTGCAgaaattgctcagttttgcctacagggcaagattcatgacaataaatgtcaagCTGCTTGTTTA

Function

NR:

description
proline-rich protein 29-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557677.2 True 2193 mRNA 0.45 6 36363555 36368288

Neighbor

gene id symbol gene type direction distance location
LOC110486232 rprml coding upstream 23800 36338066 ~ 36339755 (+)
LOC110486228 LOC106607263 coding upstream 196167 36131568 ~ 36167388 (+)
LOC110486225 LOC106607261 coding upstream 315747 36041771 ~ 36052964 (+)
st8sia6 LOC106607255 coding upstream 454312 35900832 ~ 35909243 (+)
LOC118938606 NA coding upstream 499551 35863923 ~ 35864004 (+)
LOC118938276 LOC106607270 coding downstream 89066 36457354 ~ 36460939 (+)
LOC110486240 LOC106601006 coding downstream 157351 36525639 ~ 36547943 (+)
LOC110486241 LOC106607273 coding downstream 193042 36551021 ~ 36582092 (+)
LOC110486244 LOC106607274 coding downstream 264158 36632446 ~ 36664344 (+)
LOC110486247 LOC106607277 coding downstream 304020 36672308 ~ 36677819 (+)
G1169315 NA non-coding upstream 56891 36306456 ~ 36306664 (+)
G1169286 NA non-coding upstream 96650 36266470 ~ 36266905 (+)
G1169247 NA non-coding upstream 153434 36209485 ~ 36210121 (+)
G1169194 NA non-coding upstream 251123 36112232 ~ 36112432 (+)
G1169192 NA non-coding upstream 253080 36110249 ~ 36110475 (+)
G1169366 LOC106607269 non-coding downstream 5278 36373566 ~ 36425661 (+)
G1169444 NA non-coding downstream 134448 36502736 ~ 36503327 (+)
G1169371 NA non-coding downstream 137342 36505630 ~ 36507309 (+)
G1169489 NA non-coding downstream 201377 36569665 ~ 36569882 (+)
G1169208 NA other upstream 191984 36169896 ~ 36171571 (+)
G1169207 NA other upstream 195224 36167628 ~ 36168331 (+)
G1169121 LOC106607257 other upstream 370955 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1675905 34680909 ~ 34687670 (+)
G1169532 LOC106607276 other downstream 302071 36670359 ~ 36671403 (+)
G1169542 NA other downstream 333984 36702272 ~ 36703736 (+)
G1169468 hsp70b other downstream 402500 36743291 ~ 36819540 (+)
G1169472 NA other downstream 416524 36784812 ~ 36812201 (+)

Expression


Co-expression Network