LOC110486235 (LOC106607388)


Basic Information

Item Value
gene id LOC110486235
gene name LOC106607388
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36389870 ~ 36397697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557679.2
CATTCTGCGTGGATAGAATCTAGTCTTTTTATAAATAGGAGCACTGATTATCTTGTTTACTGATGAAACGGTTCTCTGATATATTTGCTATTTTACCATTTCCACTACGTGTAGAATACATCCAGGTTATTGGCCTAGGGGCGATGACATCTAGCGACAAATATTTTACTTTGAAGAAGCTTGTTTTGTTTAAATGCAATATGTAGCCTTTTTTCGTCTGTAGAGTGTGTGGTTTTAAATGGATGGCTGAAGGAGATAAGTATGTGGGTCGCAAGGTGGGGGGTACAGTAGCTAGGGCCTTGCTATTGCTGCTGGGGGGCAGAGGATCGTTCAGCTCACATGACTGGGCTGTGACTGAGTTGGGTCTTGTGTGTGCATCTGGATCTGTGGTGATGAGTGAGAGGGGAGTGACTACTCAGTGCTCTCTTTGTGGCGAGACAATCCCTGGGTCATCCTCTCTTCCAGCTTCTCTGATCCAGGAGGAAAGTCTCTGGGCCAGGATTTGGAGACCTTAGCTGGCTACCTCTTCTGGTCCTCAGTCATCGGGACCTGGAATGAGAAGAGGATTCCACACCAGTATATACAGCGTGGATGTCGGATGGAGATTGGAACCCATAGATCTGTAACTTTTGTATCTGGAAACTAGTTGTTGGAAATGACCTCGACTCTCTTTAGAATGGTTTCTGTCTGAACGGGATCTTTTTCTTGAAACTCATTTTTGTCAGCGTGGAGGCAGGGTATCAACAGAGTGAGAATCGTGGGTGTTCACCAGCTCTGTGAGTGCTTGACAAACTTTTTCTCTTTACTCCTGTGGATATTGTTTTGGAATCAAACTCGGAGGGCGTGACCAGGGTTTCAGGTCCGAACCCTCATCCTACACCACTGGGTCACCTATCCTCAGCAGGGAACTGGTAGACAGAAAGAGGTGGATATAGTGCGTTGGACCAACTTCACTGGTTGGAGAAGACATTTTTTCCTTCTTACCTGTCCTGTACCTGGATAGGACTTGAGAAACGagaTGGGGGCTGCCTTCAAGAGGTTCTGTGCTCGgttctgttgctgctgctgctttaGCGATGATGaaagtgaggaggagaaggagcctTTAATCAGTCCTGACACTTTGGAGTACTTTGACCGCGAGGCGAAGAAGCGAAGGGAGCAGGAGCAGAACCTATGGAGTGAGCCAGGCGACCCGAGCCACTCCGAGAGAGACGATGACCGGATCCTGTACAACCTCATCCAGAACAGGAACCAGACACGCAGGGGCTCGCTGGCGCACCGGCGTCTGAGTGTGGACATTGAGGGTATGAGAGATCTGCGTCGGGAGGTCAGAGACAAGTGGAAGATGATCCTGGAGAATTTAGGATTCATGGCGGAGGCGGAGTCTCTGCTGACGGTGTCTGCCAGTGCTTCGTATGACCGTATGAAGAACGCCTCGGCGTCACGCACACTACTGCACACACTCCACTCTGAGACATCCATCTTTaacacccgggaggccccacctGAGAGATACCTCTTCATCCTGGATCGTCTCATATACCTGGATGCTGCTGAGGACTTCTTGGCGAAGGCTAGACGCTTCTACCCCAAGCGTGATActgatgatgaagatgaggacAACCCATTAGCAGTCAACCTGCCGTTGCTACTGGCCAGAGTGAACCGCACCATGAACAGAGAAGGGAGCGATGATGAGGACAAGAGGCTGGATGAGGAAGATGGGAGCGGAAGAGAGGAGGACAACTTCTAGACGGAACAGGAGCTGCAATGACCTCAAACAGTAGACAGGGGGCAATAGTTAGTTGTTTATGTTGCAGAGTTGGGAGTATACAAGGACTAGGATGTCTGATTCTGAATATACTCTGTTGAAAATACTCTCCCAATTTACACTAACActaggggctctattcaatctgtgttGCTGAAGTGTTACAGATTGTGCGATAGAAATGTTAACGTAATTTCTGACTGAACAGACATATGCCATGTTTACCTGCTAACACGGGAACATTGCCTTCacatttcaatcacgctgtaacgcTGAACTTCCGCCATACAAACTGAATAGAGCCCGAGGTTTGAACAAAAAATATACAGCTTTCCTTTCACCTCATCAGAACCATGATCCAATATGATTCTGTTTCTCTGTTTAGGCAGACTTAGCTGGGTCTCAGGTATATTAGGGAGAGTTTGAGGTTATCACCCTGCCATTTTTTAAAATCCATCCAGACAGTGTTAGTTACCCAACTCCCTGGGTCTGTTCATTATTCGTCTCCGCCAGGGAACACAGTGGACACAGTTAAACACAGCACTGAAACCCGTAGGGCACAGCTGTCCTGTTCCACATCAGCACTTTGTCTCATGATTATCAGCACTTGTTTTATCGAGTCACAAGACAGTCTTTTAAAACCAGTAGTTAAGATTACCTTGGAATAAATGTGTGTTAAACCAAT

Function

NR:

description
melanoregulin-like

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557679.2 True 2459 mRNA 0.47 6 36389870 36397697

Neighbor

gene id symbol gene type direction distance location
LOC110486234 LOC106607269 coding downstream 13324 36373524 ~ 36376546 (-)
LOC110486231 LOC106607266 coding downstream 58202 36307625 ~ 36331668 (-)
mettl2a LOC106600997 coding downstream 86702 36296868 ~ 36303168 (-)
LOC110486229 LOC106607265 coding downstream 93132 36286050 ~ 36296738 (-)
LOC110485159 LOC106607264 coding downstream 107896 36237911 ~ 36281974 (-)
LOC110486236 star3 coding upstream 125 36397822 ~ 36412496 (-)
LOC110486237 LOC106601002 coding upstream 15322 36413019 ~ 36470174 (-)
LOC110486239 LOC106607271 coding upstream 107922 36505619 ~ 36522760 (-)
LOC118938608 NA coding upstream 118844 36516541 ~ 36516677 (-)
LOC110486242 NA coding upstream 223390 36621087 ~ 36628399 (-)
G1170933 rprml non-coding downstream 50347 36338083 ~ 36339523 (-)
G1170911 NA non-coding downstream 85383 36304212 ~ 36304487 (-)
G1170852 NA non-coding downstream 218046 36171615 ~ 36171824 (-)
G1170842 NA non-coding downstream 220321 36169219 ~ 36169549 (-)
G1170849 NA non-coding downstream 239208 36149951 ~ 36150662 (-)
G1170937 NA non-coding upstream 21565 36419262 ~ 36492284 (-)
G1171001 NA non-coding upstream 97803 36495500 ~ 36495714 (-)
G1171006 NA non-coding upstream 105017 36502714 ~ 36503399 (-)
G1170826 NA other downstream 279431 36110102 ~ 36110439 (-)
G1170811 NA other downstream 298453 36090762 ~ 36091417 (-)
LOC110485158 LOC106607258 other downstream 388922 35995257 ~ 36000992 (-)
G1170691 rl19 other downstream 525226 35862152 ~ 35864644 (-)
LOC110486204 LOC106607517 other downstream 1207223 35170206 ~ 35182762 (-)
G1170998 NA other upstream 95392 36493089 ~ 36493524 (-)
G1171050 NA other upstream 196357 36594054 ~ 36594526 (-)
G1171051 NA other upstream 198135 36595832 ~ 36596641 (-)
G1171057 hsp70b other upstream 347075 36665169 ~ 36828425 (-)
G1171149 NA other upstream 486321 36884018 ~ 36884340 (-)

Expression


Co-expression Network