LOC110486237 (LOC106601002)


Basic Information

Item Value
gene id LOC110486237
gene name LOC106601002
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36413019 ~ 36470174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557683.2
TCTCAATTACTCTTGTTGCACAGGTTgtgagcgagggaaagagagggaggagagatagagagataaacaCACTCCACCTAGAACGTCAAACACGAGTAAGTGTCAGACAGAaacaggcagagaggaagaagggagggaacAGGGGAGATAAAGGATAGGAGAAATAGCTGACCGtgagtgaaagaggagagggacaaaGATAAACAAAGAGAAGTTCTTCTGTTTTGTTTTTGAAGGGAGACAGTGGCAGAgaggtatatatagagagaggtagaCCCAGCAGAAGCAGGACTACTGTACAGTGTGTTGTGTTGGGACCTTCCTCCAGGGAGCCTAGTGGAGCAGAGCTTTGTGCTTGGTGAGAGAGTGACCCCCCTGGGACACAGACACAGCCATGGATCCCTCTGCGTTGGATGAGGTTGGAGACGAGTGCAAGGAGAGCAGGAAGATCCACTTTGCTGTGCAGTCCTCGGCACCCACCCAACTGGACCCCCGGCAAGTAGAGATGATCCGGCGCCGGCGGCCCACACCTGCAACACTGTTCAGAGTGGCAGACCAGTGTTCTCCTGAGGATGATCAGTCCAGCCATCAGTGGATTGTAGGAGAGAATGGGGTACTCAAGCCCAAGCGAGTTAACCCAAATGTGTATCAGCCACCATCCCTGAAAGCCGTCCAGAAGATGGCTGAGGCACACATGCAGAACCTGGGTGTCTACCCCCCCTTGGAAGACCCCTTTGAGGGGGAAGAGTACGACGACTACCCCTGtcatgaggagagggaggagagattcCCCACCAAAGCTGCTGAACCCCAAGCGACCAGCACCACAGACCAATCAGAGGAGCcggatgaagaggaagagggggaagagaaagaagaggagaaagaggaggaaacgACAGAAGAAAAGACAGCGGAGAAGGCAAAGAAAGTGCGCAAAAGTGTAAAGTTTTAACACTTCTTTTGAAGGGAacaaaggaagggagagagatggtggcaGATATGTGAACGACTGAGTGAATGAATGAGTGACTTTAATGTGTGAACgtgtgagtgagaaagagagcttcTAAGTTTGAATGGTAAGTATTCAaatgaaatgaatgaatgaatgaatgtagGTACTGTCGCGCAAATCTGTGAGCAAAAACatctggaaagagagagggagagagggagagagaatgtatAATAGATATGGCCCTTGTGAAGAGGTGAGGAGTGGCTCCTTAGAACTAATGAGACGAGGGGATAGGGCAAGGTCACCGTGACCTTGAGGTCCCCCTCACTGCAAAGCTAGTCTTCTCTTCCATGTCAGGGGAACCATTCATTCACTTCTCACTTTCTTACTTTGCTCTTTAATGTTACAAAGCAATGGAATAATGGCTAGAAATAATTACACAGCACTCAAAATAACTGCAAACAGACAAACAGCTTGATGAACAGCTTCCGtatagagcacacacacacacacacacacacacacacacacacacacatacagaggagATATCTTCTCACTGTCAGTTCAGACTATATTCTAAAGCTGCTCCGTTACTGTGCAGGTATGATAATACAGACTCCCATATGGGTTCCTTTCAAAATCACAAAGACCTGTATAATGTGTACCAAATTTCACTCTGGCCTAGATTGGATATCTCTGCAGCCTAATCATATTGAGATCTTGTTCTTGGAAGAAGTGAGcaactgctgccatcttgtggcaaGATAGGGGATGTAGAATAACCAGAGCGTGTGTATTGACGTGGATTTACATACGATAAACTGTGCACTGCATAGGCCTTCAGATAATATGCATCTATATAATTGAAATGATCTAGATTTGCAATGTATTTGAAACATTTGTGATGCATTTGAAGTTATTTTTGGCGTCCATCAAAGCTATGTGTGTCAATGATGTACTCTGGGTGTATGTGAGGATGCCATGCTTTTGTAAAAGTAGTccaatttagtttttttttttgtgagaaaaaaaatgtattcattttgtatgcagAATCAGATTcgtattgtttgtttgtttaaataATTTCCTGTGTAAAGATGCATTAATCAACTTAGCTGCATATGGTCTCTTTCTGTTGAACAATCGTCACAACATTTAGTAACCTTTTCGTCGTGACTTGGATAACTGTGTTTTTCATATTCTCGTGGAAAACAACGCAGACAATACAATACATAGtgactctctttctcttcctgctgAAATGGAATGACACATTTGAATATTCAAATATTCACCCTCAGAATGTCATTACCATCATATGCTCATTGATAATGTCAGTCTAATAAACCGTTTTCTTTATTTCCATCGCATCTGTTCTCCAACTGCAGGATTGCTTGAGTCAGCGGAATACATTTTGGTAGTGGCACCGCTGAATGTCTCAATCTGTACCAAACTGCtaatatattgtaattgttttgatTCTCTTTTTGTTGGACAATTGAACATTTGTATGCTCTTTCTCTCTTGCCTGGGTGTGTGGGCTGGGCAGCCCTTTAAAGTGTTGAGACATATGGCACCTACTCCCTCCATTCTCTCACTGTCTGGCTGGAGTGagcatcctctccttctccaagTCTCTCTATCCTCCACGGTCAATAGGCGAGTGCCATGGCAAGAATGAACTCGAATCGATAATATTCTTCTTTATTTCATTCTTTTTTTCTGTTCTTGTTAAAGATGTAGACATTTCAATGTGAGCCACAATAACAATATctaaataaacacattttcctGATTTGAAA
>TU1335342
AtgtagagcacacacacacacacacacacatacagaggagATATCTTCTCACTGTCAGTTCAGACTATATTCTAAAGCTGCTCCGTTACTGTGCAGGTATGATAATACAGACTCCCATATGGGTTCCTTTCAAAATCACAAAGACCTGTATAATGTGTACCAAATTTCACTCTGGCCTAGATTGGATATCTCTGCAGCCTAATCATATTGAGATCTTGTTCTTGGAAGAAGTGAGcaactgctgccatcttgtggcaaGATAGGGGATGTAGAATAACCAGAGCGTGTGTATTGACGTGGATTTACATACGATAAACTGTGCACTGCATAGGCCTTCAGATAATATGCATCTATATAATTGAAATGATCTAGATTTGCAATGTATTTGAAACATTTGTGATGCATTTGAAGTTATTTTTGGCGTCCATCAAAGCTATGTGTGTCAATGATGTACTCTGGGTGTATGTGAGGATGCCATGCTTTTGTAAAAGTAGTccaatttagtttttttttttgtgagaaaaaaaatgtattcattttgtatgcagAATCAGATTcgtattgtttgtttgtttaaataATTTCCTGTGTAAAGATGCATTAATCAACTTAGCTGCATATGGTCTCTTTCTGTTGAACAATCGTCACAACATTTAGTAACCTTTTCGTCGTGACTTGGATAACTGTGTTTTTCATATTCTCGTGGAAAACAACGCAGACAATACAATACATAGtgactctctttctcttcctgctgAAATGGAATGACACATTTGAATATTCAAATATTCACCCTCAGAATGTCATTACCATCATATGCTCATTGATAATGTCAGTCTAATAAACCGTTTTCTTTATTTCCATCGCATCTGTTCTCCAACTGCAGGATTGCTTGAGTCAGCGGAATACATTTTGGTAGTGGCACCGCTGAATGTCTCAATCTGTACCAAACTGCtaatatattgtaattgttttgatTCTCTTTTTGTTGGACAATTGAACATTTGTATGCTCTTTCTCTCTTGCCTGGGTGTGTGGGCTGGGCAGCCCTTTAAAGTGTTGAGACATATGGCACCTACTCCCTCCATTCTCTCACTGTCTGGCTGGAGTGagcatcctctccttctccaagTCTCTCTATCCTCCACGGTCAATAGGCGAGTGCCATGGCAAGAATGAACTCGAATCGATAATATTCTTCTTTATTTCATTCTTTTTTTCTGTTCTTGTTAAAGATGTAGACATTTCAATGTGAGCCACAATAACAATATctaaataaacacattttcctGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557683.2 False 2769 mRNA 0.44 5 36413019 36443038
TU1335342 True 1293 lncRNA 0.38 2 36413026 36470174

Neighbor

gene id symbol gene type direction distance location
LOC110486236 star3 coding downstream 523 36397822 ~ 36412496 (-)
LOC110486235 LOC106607388 coding downstream 15322 36389870 ~ 36397697 (-)
LOC110486234 LOC106607269 coding downstream 36473 36373524 ~ 36376546 (-)
LOC110486231 LOC106607266 coding downstream 81351 36307625 ~ 36331668 (-)
mettl2a LOC106600997 coding downstream 109851 36296868 ~ 36303168 (-)
LOC110486239 LOC106607271 coding upstream 62581 36505619 ~ 36522760 (-)
LOC118938608 NA coding upstream 73503 36516541 ~ 36516677 (-)
LOC110486242 NA coding upstream 178049 36621087 ~ 36628399 (-)
LOC110486245 LOC106607276 coding upstream 222107 36665145 ~ 36671427 (-)
LOC110486248 LOC106607280 coding upstream 237427 36680465 ~ 36684617 (-)
G1170933 rprml non-coding downstream 73496 36338083 ~ 36339523 (-)
G1170911 NA non-coding downstream 108532 36304212 ~ 36304487 (-)
G1170852 NA non-coding downstream 241195 36171615 ~ 36171824 (-)
G1170842 NA non-coding downstream 243470 36169219 ~ 36169549 (-)
G1170849 NA non-coding downstream 262357 36149951 ~ 36150662 (-)
G1171001 NA non-coding upstream 52462 36495500 ~ 36495714 (-)
G1171006 NA non-coding upstream 59676 36502714 ~ 36503399 (-)
G1170962 NA non-coding upstream 100685 36543723 ~ 36544857 (-)
G1171039 NA non-coding upstream 129199 36572237 ~ 36572450 (-)
G1170826 NA other downstream 302580 36110102 ~ 36110439 (-)
G1170811 NA other downstream 321602 36090762 ~ 36091417 (-)
LOC110485158 LOC106607258 other downstream 412071 35995257 ~ 36000992 (-)
G1170691 rl19 other downstream 548375 35862152 ~ 35864644 (-)
LOC110486204 LOC106607517 other downstream 1230372 35170206 ~ 35182762 (-)
G1170998 NA other upstream 50051 36493089 ~ 36493524 (-)
G1171050 NA other upstream 151016 36594054 ~ 36594526 (-)
G1171051 NA other upstream 152794 36595832 ~ 36596641 (-)
G1171057 hsp70b other upstream 301734 36665169 ~ 36828425 (-)
G1171149 NA other upstream 440980 36884018 ~ 36884340 (-)

Expression


Co-expression Network