LOC110486240 (LOC106601006)


Basic Information

Item Value
gene id LOC110486240
gene name LOC106601006
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36525639 ~ 36547943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940937.1
AAATGTCATTATTTGTGTCCATAATAAAGAAGGCTAATGCTAAAAGCAGTGTTCACAGATAAAGGGGGAACGGTGGAGGGGAGGGCGAACTAGTGAGCGGAGATATAAGAGTTCGGGTTGTTGGCTGGGGCAGTTGTCGAGAGGTAGGCTATTGCAATTGTGTTACAAACCGAAAAAAACGATTAAATCCGCCGTCGCAGCTGCCGAAACAACGGTAGCATGGTAGCTTTGGACTGGGGTTTCCAAGACGAGCGCCGATATCTACACGTTACTGTAATTTTAACACCGAATTACTTATCCCCCTGATCGAGTCGGGTAAACCACCGTCCGAGATGGGGAAGGAGGTTAATGGTGTTTCGCGGAGCCGGTTTGAGATGTTCTCAAACAGCGACGAGGCCGTCATCAATAAGAAACTGCCCAAGGAGCTGTTGCTACGAATCTTCTCCTTTCTGGATGTGGTGACACTCTGTCGCTGTGCCCAGGTCTCACGGTCGTGGAATGTGCTCGCCCTGGACGGCAGTAATTGGCAGAGGATTGACCTTTTCGACTTTCAGAGAGATATTGAGGGGCGAGTGGTGGAGAACATTTCGAAACGATGTGGGGGATTCCTGAGGAAGTTGAGTCTGCGGGGCTGTCTGGGGGTGGGGGACAGCGCTCTGAGaacctTCTCCCAGAACTGCAGGAATATTGAGCTGCTTAGTTTAAATGGCTGCACCAAGATTACTGACAGCACATGTAATAGCCTCAGTAAGTTCTGTCCCAAGCTCAAGCACTTGGACCTCGCGTCCTGTACCTCAATCACCAACCTGTCACTCAAAGCACTTAGCGAGGGCTGTCCTCTGTTAGAGCAGCTCAACATCTCGTGGTGTGACCAGGTGACTAAGGATGGCATCCAGGCCTTGGTACGATGCTGTCCCGGACTCAAAGGCCTTTTCCTCAAGGGCTGCACACAGTTGGAGGATGAAGCACTGAAGCACATTGGTGCACACTGTCCAGAGCTGGTCACTCTCAACTTACAGACGTGTTCGCAGATCACAGATGAAGGTCTCATTACTATATGCCGGGGCTGTCACCATCTGCAGTCGCTGTGTGTCTCAGGTTGTGCCAACATCACAGACGCCATCCTCCACGCCTTGGGACTGAACTGCCCGCGCCTCAGAATATTAGAGGTGGCTCGCTGCTCTCAGCTCACAGATGTGGGCTTCACTACACTGGCAAGGAATTGTCATGAGCTGGAAAAGATGGACCTGGAAGagtgtgtgcagATCACGGACGGCACACTCATCCAGTTGTCCATCCACTGCCCTCGTCTGCAAGTTCTGagcCTGTCTCACTGTGAGCTGATTACTGATGATGGCATCAGACATCTGGGCAGCGGGCCCTGTGCCCACGACCGGCTGGAGGTGATCGAGCTGGACAACTGCCCCCTGATCACGGACGCCTCGCTGGAGCACCTGAAGACCTGCCACAGCCTGGACCGCATCGAGCTCTACGACTGCCAGCAGATCACCCGCGCAGGCATTAAGAGACTAAGGaccCATCTACCTAACATCAAAGTGCACGCGTATTTCGCCCCAGTCACCCCACCACCCTCGGTCGGGGGGAGTCGCCAGAGATTCTGTCGTTGCTGTATCCTGCTATGATGTGAAGACtgcgccccccccaaaaaaaaaaaaatctgccctTCCACCCAACCTGGCTCGGCCTGGTCCGATCCGGCCTCCAGGTATACATGCtggtgtgcccccccccccccccccccccgattggagctgcagagagagggagagagcccaACCACCACAGGGTCTGGGAAGAACCTTCCCCACGACGTTCCCAAACCCACTCACAACAGCCTTTGtcaaacacacaaataaacacacacccacacacacatcaccacagATGAGCGTCAGTACATTCCCTGCTGTCCCCAGGCCCATGTGCTAAAGACCACCCAGCATTACAGGGAGGATTACATAATAGAACCACTGCTGTTTACAGATTAGGCTCCTGATACACTGTATGGACTACATGAAACTAGGGCTCACTGGATACAAGGTTCCCAATGGACTAGTATGACCTTTTACTGAAGGATCAGGAAGATAGGTTTGGATCAGAAACTCACATCCAATGTGTCTGGGTGTTGGGAGGATAACCAGAAACATGGCTAGAGCTATGAGGATATTGGTTTGGTAGGAATGCCCTCAGAATCTTTCAACGACTGACAAGCTACCTCTAGACATAACTGCTCTTTGTTATCCTCTGGTTCCAGACTGCCCACTCCAAACATATAGCTAggccagttttttttttattacaaaagACCGGTTTCCATTGGCACTTTGAAGTCAACCCAGGTTGGACTGTCCTTGGTGGGCAAGCTGAAATTGCGTTTCCGCTGCCTCCAAATAGAATAAATGATGTCATGTTGCTATGTAGTCAATATGTGACTGCAGCTGGCTTCGCTAATGTTGCTAACTGGCAAGATGTTGACGAAGTTAAAGCATTGTGAGGGTGAATTTAAATAACTTTAACCCATACTCCTGTCAGTGCTAGCCATACTCGGAGCCATGTATTTAGCTTGCTAACTAGCCAAACGGTTAGCGTTGCCATTCGCAAACCAGGCAACCGGTTTAATATGATGCAACTACGACCTGGCCAGCTACAATTCCTGCTAGCTcattttagctagctacagtagcttgtTTTAACTCTGAAATGCTAGCTAATAATGGTAGCTATCATTTTAGGGCtgactgttgtcataaaggtttGTGTAGTGCAAAGATATATGGATCCAGCTGTGGTGGTAATTCGTGTCATGTCTAACTACTGCATTACTGCTTGTCCATGTGCTAGCTGTCAGCTCACACACCCAGATGAGCTAGCTAAACGTTGGGAGCACCCAGCAGTGATTTTTTaatttacatatatttttttttttaactgcgttACCAGCTTGACCAGTTGTGAAACTGGCCTGCTCTGGCTCGAATTTGGGAATTCCATTCGAAACAGTTCTAATTTGGCCCTAATTTTAAGTGCTAGTGGAAAATGGTGTCTTCTACAACCAttaaactgcccccccccccccccccaaacacacacactcacaaacatagTGTAGATGCAGTAGGTGGTAGTTCTTATCTAGACTCAAAGTAGCTGCAAAGTAGCTGCAGCTTAATGCAGGCCTGCTAGGGGATATGCTGAGTTTATCCAGCAAAATTATGACAGAGTCTCTGACTCACCTAATAGTTTACTGCCACATGACTACACACACTTgaacatgcgcgcgcacacacacacacagctcaataccctttcccccttcccctttctctgTTACAATCAGAAGCTTCATTGtacaaaaaaaaagagagaatggTGAATATTTTTCTAAAAAGGACACCAATTGAGACTTACACGTGGGGACTTGAGAAGATGCCAAATGTTGCATGTAACAATTctagttttttaaatgtaatatatGTAAGTACTGTGGAAATCCAGCCCCGCAGCCAGCTAAACCACACCACAGACCATGGTGTGAAGGAGAGATTTACATCAATGGGTCTCGCACTATGAACTATGTTAAGCCAAAcacgtactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagaatgttCCGGGGCTATGGGGAGTAGTTTGGACAGTGAACCATTTTGGAGACATAATAAACCAGGCCCCTGGCAAGCTAGTCTTAACAACAGCAAAATATAGAATACAGACACAAACtcataaaataaaaaagattGACGTCACTGCGAGTTTGTGATGCCAGACAGACCAGGAGAACGGAAAGAAAAAGCAAACCGAAAACAAAGTAtctgtatttttattttgttgctTTTAGTCTTTTTTTTCCCTTGTTGATGAACATTATTTATGAATGCGAGCTGGTGAACCACACATGGGTAGGAGGAGATGCCCAGTGTTGCTCGCGGGCACCGGGATCTGGTCAGTGACAGTGATGCCCCTTCAACTCCCATGAGGTCTTGCAGGGGAGAGGGTGCCATTGAAGTTGACCCTGCCACCAGCGCAACGCCCCCTCTTTCTGCCTGGATCCAGTGacatgagaggaggaggggcCGCTGGGATTGGATAGGAACAAGGAAGTTGTTTAGAATCTTGACCTGGAGTGAGCTGAGCACACAACACTGGCCTGCTGACAGATGTTGGAGTGCAGGGGTATGTGTCCCAAAACGCCACAACTACCACCTTATGAAAAGACTTTGACCCCTGTTCATGAGTATCAAAGCCTTTCATCTggatccttcctcctctcccacaCTTTAACCttctctgttttctgtctctcctcttcgattctctctgttctgtttttctttttgtagttgtctttgttttagCCTTTTTCTGTTCAAGTTGGTGACTTCTACATCTCGTTCTCACCCCTCGCCACTCTCTTTTCTGTTTGGTGTGTTTTGGGGTGGGGCTGTTTTTGTTTTGCATTCAGTCATGAGTTCAGTGTTAAGTTTGAGCCCTCTTGCAGTCCTTGGTTTTTGGTCTTATGCGGTTTGTGTTCTATTACGAGTTCTTGTTACCTACTGTCCAGAGTGTAGCCTTTGTACAGGGGGAAGGGTTGGACACAGTGCAATTTGTAAAATAAGTTAATGATGAGGATGAACCGGTGTCCATTGTATGTATAATGGATGCTATACAACGTGTTGAATGTGTTTCCATGAAGGTGTTGTCTGGGAACGTGGGGAGTTAGGGCCTAGGTTGTGTGCTGATGTAGCAGAAACAGATTCCTCTCCTGATGTGCTTTCCCTTTACTTGTTATGCCTTGCTTTGGGGATCCCCTAACACCATGATGCAGCCCAGCCCACTGTAGAAACAAATCTGAGTTGGTACGCCCAATAGGAACGTTTTAATGTTCCCTAAAAATGCATATTTCCTTCTAAGATTCAAACAAACCAACAGGCAAAACATTTAATGATGATTATTTTCTATTTTGTGATTTGTCAGCCAGGGGTAGAAGTGGGAGGGGGATAATACAAACTGAGATGAATCTAGTCTGATCTGTTTTGTTGAATGTGGGTTTATGGGGGATTAGAGAACATACAGGAGCCAAGATGGCAGAGATGCATAATGTACTCTCGTACTACTCACCCTCTGGCTACGTGCAACTGTGCTTCCACTGCTCTGTACGGTCTGAAGTTACTGGAAGGAAAGTCATGGTGAAGCCTGGATCCAGAACACCTGTTTGCCCTCTTCACACAGTTGCTGAGTCACAGGCACCACTTCTACTCGCTTAgtcatacacagacacactgagacacacacggTACGCACTGACCATTTGCACTCCCATGGTCCTCTCTGAATCATAACTCAGTTGAGAGCGAAGGTATGCAGAGTAGACATGCaagcctacacatacacactattGACAGCACAGACAACAGGCAAATTCAGACTCGAGCAGTACCTTTTAGAATGTATTCAGTATACAAACACATGAGAACATGTCCATACCGGGTTCTCATAAACTACACAAACTATCCTGTAGAATGTCAAGACGAAACACATGCAAAACAATTATACTGCTTCATTCCACTTTTTTCCCCAGCAGTTTACATGAAAGATGACAGATGACTGAATTCTGGATCGGTCCACTCAGTCCCTATGACTAGGCTGTGTGTTGGAGGGGGTAGGGGAGGAGGGATGGCTGCGTGAACAAGATGGTGGATCTAAAGTGTGTCCTTGGTAGTTTGACACCCGGGGATTACTttacttttttaattttttttttatttactttacACAATGACTGTAGTTCATATAAATTAATGTCAatcttttttcctttttttttcttttctttttttttttttacaattaactgattataaataaatatgtatgtatgaataaatatataactatatattattaA
>TU1333542
GTAGCTGCAGCTTAATGCAGGCCTGCTAGGGGATATGCTGAGTTTATCCAGCAAAATTATGACAGAGTCTCTGACTCACCTAATAGTTTACTGCCACATGACTACACACACTTgaacatgcgcgcgcacacacacacacagctcaataccctttcccccttcccctttctctgTTACAATCAGAAGCTTCATTGtacaaaaaaaaagagagaatggTGAATATTTTTCTAAAAAGGACACCAATTGAGACTTACACGTGGGGACTTGAGAAGATGCCAAATGTTGCATGTAACAATTctagttttttaaatgtaatatatGTAAGTACTGTGGAAATCCAGCCCCGCAGCCAGCTAAACCACACCACAGACCATGGTGTGAAGGAGAGATTTACATCAATGGGTCTCGCACTATGAACTATGTTAAGCCAAAcacgtactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagaatgttCCGGGGCTATGGGGAGTAGTTTGGACAGTGAACCATTTTGGAGACATAATAAACCAGGCCCCTGGCAAGCTAGTCTTAACAACAGCAAAATATAGAATACAGACACAAACtcataaaataaaaaagattGACGTCACTGCGAGTTTGTGATGCCAGACAGACCAGGAGAACGGAAAGAAAAAGCAAACCGAAAACAAAGTAtctgtatttttattttgttgctTTTAGTCTTTTTTTTCCCTTGTTGATGAACATTATTTATGAATGCGAGCTGGTGAACCACACATGGGTAGGAGGAGATGCCCAGTGTTGCTCGCGGGCACCGGGATCTGGTCAGTGACAGTGATGCCCCTTCAACTCCCATGAGGTCTTGCAGGGGAGAGGGTGCCATTGAAGTTGACCCTGCCACCAGCGCAACGCCCCCTCTTTCTGCCTGGATCCAGTGacatgagaggaggaggggcCGCTGGGATTGGATAGGAACAAGGAAGTTGTTTAGAATCTTGACCTGGAGTGAGCTGAGCACACAACACTGGCCTGCTGACAGATGTTGGAGTGCAGGGGTATGTGTCCCAAAACGCCACAACTACCACCTTATGAAAAGACTTTGACCCCTGTTCATGAGTATCAAAGCCTTTCATCTggatccttcctcctctcccacaCTTTAACCttctctgttttctgtctctcctcttcgattctctctgttctgtttttctttttgtagttgtctttgttttagCCTTTTTCTGTTCAAGTTGGTGACTTCTACATCTCGTTCTCACCCCTCGCCACTCTCTTTTCTGTTTGGTGTGTTTTGGGGTGGGGCTGTTTTTGTTTTGCATTCAGTCATGAGTTCAGTGTTAAGTTTGAGCCCTCTTGCAGTCCTTGGTTTTTGGTCTTATGCGGTTTGTGTTCTATTACGAGTTCTTGTTACCTACTGTCCAGAGTGTAGCCTTTGTACAGGGGGAAGGGTTGGACACAGTGCAATTTGTAAAATAAGTTAATGATGAGGATGAACCGGTGTCCATTGTATGTATAATGGATGCTATACAACGTGTTGAATGTGTTTCCATGAAGGTGTTGTCTGGGAACGTGGGGAGTTAGGGCCTAGGTTGTGTGCTGATGTAGCAGAAACAGATTCCTCTCCTGATGTGCTTTCCCTTTACTTGTTATGCCTTGCTTTGGGGATCCCCTAACACCATGATGCAGCCCAGCCCACTGTAGAAACAAATCTGAGTTGGTACGCCCAATAGGAACGTTTTAATGTTCCCTAAAAATGCATATTTCCTTCTAAGATTCAAACAAACCAACAGGCAAAACATTTAATGATGATTATTTTCTATTTTGTGATTTGTCAGCCAGGGGTAGAAGTGGGAGGGGGATAATACAAACTGAGATGAATCTAGTCTGATCTGTTTTGTTGAATGTGGGTTTATGGGGGATTAGAGAACATACAGGAGCCAAGATGGCAGAGATGCATAATGTACTCTCGTACTACTCACCCTCTGGCTACGTGCAACTGTGCTTCCACTGCTCTGTACGGTCTGAAGTTACTGGAAGGAAAGTCATGGTGAAGCCTGGATCCAGAACACCTGTTTGCCCTCTTCACACAGTTGCTGAGTCACAGGCACCACTTCTACTCGCTTAgtcatacacagacacactgagacacacacggTACGCACTGACCATTTGCACTCCCATGGTCCTCTCTGAATCATAACTCAGTTGAGAGCGAAGGTATGCAGAGTAGACATGCaagcctacacatacacactattGACAGCACAGACAACAGGCAAATTCAGACTCGAGCAGTACCTTTTAGAATGTATTCAGTATACAAACACATGAGAACATGTCCATACCGGGTTCTCATAAACTACACAAACTATCCTGTAGAATGTCAAGACGAAACACATGCAAAACAATTATACTGCTTCATTCCACTTTTTTCCCCAGCAGTTTACATGAAAGATGACAGATGACTGAATTCTGGATCGGTCCACTCAGTCCCTATGACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940937.1 False 5977 mRNA 0.47 15 36525639 36547943
TU1333542 True 2518 lncRNA 0.44 2 36545142 36547679

Neighbor

gene id symbol gene type direction distance location
LOC118938276 LOC106607270 coding upstream 64700 36457354 ~ 36460939 (+)
LOC110486233 LOC106607267 coding upstream 157351 36363555 ~ 36368288 (+)
LOC110486232 rprml coding upstream 185884 36338066 ~ 36339755 (+)
LOC110486228 LOC106607263 coding upstream 358251 36131568 ~ 36167388 (+)
LOC110486225 LOC106607261 coding upstream 477831 36041771 ~ 36052964 (+)
LOC110486241 LOC106607273 coding downstream 13387 36551021 ~ 36582092 (+)
LOC110486244 LOC106607274 coding downstream 84503 36632446 ~ 36664344 (+)
LOC110486247 LOC106607277 coding downstream 124365 36672308 ~ 36677819 (+)
LOC110487537 LOC106601013 coding downstream 137153 36685096 ~ 36687505 (+)
LOC110486255 LOC106607286 coding downstream 302127 36850070 ~ 36854713 (+)
G1169371 NA non-coding upstream 18330 36505630 ~ 36507309 (+)
G1169444 NA non-coding upstream 22312 36502736 ~ 36503327 (+)
G1169366 LOC106607269 non-coding upstream 99978 36373566 ~ 36425661 (+)
G1169315 NA non-coding upstream 218975 36306456 ~ 36306664 (+)
G1169286 NA non-coding upstream 258734 36266470 ~ 36266905 (+)
G1169489 NA non-coding downstream 21722 36569665 ~ 36569882 (+)
G1169496 NA non-coding downstream 40565 36588508 ~ 36588731 (+)
G1169498 NA non-coding downstream 46067 36594010 ~ 36594465 (+)
G1169499 NA non-coding downstream 46778 36594721 ~ 36595178 (+)
G1169208 NA other upstream 354068 36169896 ~ 36171571 (+)
G1169207 NA other upstream 357308 36167628 ~ 36168331 (+)
G1169121 LOC106607257 other upstream 533039 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1837989 34680909 ~ 34687670 (+)
G1169532 LOC106607276 other downstream 122416 36670359 ~ 36671403 (+)
G1169542 NA other downstream 154329 36702272 ~ 36703736 (+)
G1169468 hsp70b other downstream 222845 36743291 ~ 36819540 (+)
G1169472 NA other downstream 236869 36784812 ~ 36812201 (+)

Expression


Co-expression Network