LOC110486241 (LOC106607273)


Basic Information

Item Value
gene id LOC110486241
gene name LOC106607273
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36551021 ~ 36582092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940938.1
GAAGAaagagaaaatgtgtgtgtgtgtgcatgaatgcttgcgcgtgtgtgtgtgggtggcgtGCGGACGGTGTCTCTTCCGACGTTATTCATTTAGACTTAGGGGAAGTTTCCCAGCAGGTTATTTATACTGTATCGTCTGCCAATCGTTTCTCTTGCATCTCCAGACAGAGAAAACCCaagcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGACCCTGATGCGCAGTAAGAGCGTGGAGAACTTCTTCCAGAGGTCCTACAGTGACGCCCGTCTCCCCCCTGACTTCATCACCGACCCGCCACCCCCCTCCCCGCCCCCTGGCTCTCCCCTCGCCAGTGAAcgctcaccctccctctctccgtcactcagccccaacccctccctctgctcccACTCCCCGTCTCTAAGCTCCTCCCCCTCGCTGTCTTCCAAGGCCCCGCCCCCACCCCACCTGACGCAGGTGACCCACTGCTTCCAGGAGCACGTGTTCCGCAAGCCCACCCACTGCCAGCTCTGCAAGCACCTGATCGTGGgtaaCTCTAAACAGGGTCTTCGGTGTAGAACCTGTAAGATGGGTGCTCACCTGTGGTGCACCTCAGAATTGTCCCAGCAGCCCTGCAATGGAAAGtctgggGTCGGGGTGTTCAAGCGGAACTTCAGCTCTCCCATGCTGGTCAACGAACAACTGGCTGTCGTCAAGGAGGTGCAGCCCACCCAAGGGGCAGGCCGGGGGCGTGGGGTGGACCCTATTTACGCAGCCCTGCGCTATGGGACGTCCCTGGCACAGATGAGCCGCTCCAGTTTTGGGAGCGTGTCCGAGTCACCCACGCACAGCCAGggtgaaggaggagaggagggggagcagaggcagtacagcatggaggaggagatgccaCAGGAGACAGGGGATCTGCCTCCGTGTGAAAACGAGAAGGCTGAACCTGAGGGTGGGGGCAGCGAGCAGCTCCAGGAGCCTGTAGAGGAAACCAGCgtgaagGTTCCCAGGCGTATTGAGGTTCACTCCATCCACACGTATGTAGCGCTCTTCAAGTTCCTGCCTCAGGAGCACAACGACCTCGGACTAGAgcctGGTGATCGGGTGCTGGTCACTGATGATTCTAATGAAGAGTGGTGGAAGGGTAAGAGTGGAGACAAGGTGGGCTTCTTCCCTGCTAACTTCGTTCAGAGGGTGCGCCCAGGGGAGAGGGTGTGGAGGGTCACCCAGCCTGTCCCTGCCAGCCGAGGGATGGGCCACATGCCAGTGAAGGAGGATCAGatCTGTGTGGGGAAGAGTGAGGACAGTGATGGTTTTCTGAAGCTGAGCAGTGGGAAGAAAAGAGGACTGGTCCCTGCTAAATCCATTGAGGAGATCTAACCTCTGTCTCAACACcagccccccttctctctctctctcttaccagcACCCTGTAACCTCCCCACACACCCCTGAGGAGGACCAGCCAGTCCGGGGGTCCTCCAACACCACCATCGTGAGGCCCACCACCCTACTAAACTGAGTGGGGAGCCGTGATAGTTCAGCTTGTGAATTCCAGGTGATGTGGAGGATGCCTCAGCTTTATCCTTGCTGACCTTGTCTCCTCCACCCCAATGTAGCTGACAACCCAGACTTGAAAGAGTTGGCCTAGGTGTTGTGGAGGACTATCTAAGACCCCAGTACCCCATGTTTTCCTGCTGTAATGTACCTTAGTCTATGAGTGAACTGGGTTGGTCTGTAGTCCACACCACAGGGGTATGAGTTTTAGGACTGAAGGACTGGCTGCTGTGGACTCCAGTAACTTCCCTCAGGATGGAAGGAACTTTGAGACTATCTTCTGTCTGATgagtctggtctctctgtgtgtgatttgACCAGTTCTTTTTCACTGTCCTCTATGGCTGGATATCACGAGGCTGAAGAATGCAGGATTAAGGCCGTCGCACACTATACAGTCGAAACATGGCGCGCTCCGTTTCGCGCATATATAATGACTCAAATGTGTGCCGTTTTTGTTCGTTTTGGTGTTTggcaggttttttttttgtctgttcgCTCACACAACATCTTTTATTGGGGCAAGTTGAAGTTCAGTAGCCAATGTCTACGCCCTTTCGTCTGTCATTGGTCAACTGTAGTGTTTTCAAATGAAGGTCCTTTAAGGGAGTATGAGAGCACAGTCGTGCGCGCACACCTAACCGAGTTCTGCCAAGAGCAAACAGAACCTAGTATTAGTATACGTTGCCTTAATCAGGAGGATGTACTTGTGTTGTGTGTGGGGGTAATGTTCCTGGTCACTGCATGGAAGAAAACATTTGTTCTTTCTCTGATGAACTAGAACAAGTGTCACACTCCTGATGGCAGCATCACAGATGGACGCCCACTATGATCACAGTAATTCATTTAAGAGGTGACCGTGAAGGAGATAATTGCATGCTGAAGGATGCACTTGTTTCAATGTCGGTGTCAGTGAGATGTTCAAGATACTGCCGATGGTTGTAGGTTTCGGTGCTCGCGTTTTCTCTCCCCCGTTCCTTTggtccaccttctctctctctctgtcgctctcggtctctatctctctctctctctctctgtcgctctcggtctctctctatctctccttccctcttccatcTTTCTCAGCTATCACATTGGTCCCTTGGCTGGGATTTGACTTCAGCTTAATTTAGACTGGCACAGAACTTAACTGCTCTGCAAGGACGGATGGACGGGCAGGTGGGTGGGTGACACTGGGCAGAGTACACCCTGCTCAGACCGACCAGACAGCCAGCAGAGGACAGGACAAACTAGGTCTATTTcgacacacactctctcagatCCTGACTCACTGGCTGACTCACTGACATTTGACCTCGCACTTGGCAGGTTCCAGAAGGTCATGGATGTAAGCCACGTCATTCTATTGTACAGGTCAATCAGTCGCACACTTCAGAGAATGTGTTTTTCTATGTCCTATTTATGAAAAATACAAGAGACGACATTAGATTGGGGCagtgaatacttacataaatactTCAGTGTTTTTTGTTCTCTCCCTCAGTAGTGTTTGAATAGCCTAGACTGTAGAAAACATCTATGAATAGAGacattgtttaaaaaaagaagaagaaacaaaTGGagcaacaacacattttttttaactgcTCTAAATTTGTTTCAATTTTCTGGCCAATTTAGCAGACGGGCACTGAGGAGCCGTGGAAGACTTGGGAAGTGTTTTCGTGTCTTTTGGCTTGTCTGTTTGGTCCACCGCTGGTAAACAAACAACAGCCAAGAGCCAGTCGGCTGGAAAACCACATGAACAGACCTTGTAAGTGTGACAACCGGACATGGTCCCGCTGGTCTgagggacagggagcgagggatatggagggacagggagcgagggatatggagggacagggagggatgTAGACAAAAGGGGTTGACCCAGGTGTTGAACCATCATGAATCAATGTGTCTGTATGCAGGTTTCTTTGTCTATGGATGACCAATTCAACATTGATCAAATgtcagtccatctctctctctctccattccccactcactttccctctgtctctgacACTATTGGGCATTTTTGCTGCTAGTGGGAAGGGTGGCTGGACTGTTGTATTGTACATGTAATGTAAGCATGTTTAATGATAGGATAATGGGTTGGATTTCAACGTTTCCATAATGTACTGATCATTTATTGATTTAGACAGATATCTATCTACTTGCTGAGTTGCAGCACGTAGCGGTCACACTGTTGGCATTAACGGCCAATAAcatgtcccctccctcttcctgtaGTATAagaatgcagtatatacagtaagtCATCGGAAGTGTAAAATAAGTACGATGATGAACATattgggtgcgttcgtaaattcagattgttgtcagattgtccgttggtaaacgctctcagagcgttcagagcTCACGCTGGACGCTCCGGCCGAGGAGGTTTGATCCAAGCGTTCAGACCCCACAacgacagtcaagcacccaagctaactggctaacttgcTAGGTACTTATAGACAcgaatgagagaacacctcactctgaccagtttactcgccctagcagagctggttaggctgttttcatgttatccagagtgttggggACTGTAACTGTTCTGccggcaacaatttaattacgctttctttgccgacgtttactgacgccggccatattcaacgggtgttgcgtgttcgtaaattcatcagttatgctctggcacactcagacgagagtgctctgaaatcagtgTAGATGGGCAGAGCGAACTTACGAACGCACCCATTATTTCATGTTTTGTTCATCACATTGTGCATGATAATATGATCATCTTTGGGTCTATATCCTCCGTGTGTGTGAATGGATGAAGTTTCACAGACTGTGATGAATATTGTATTTTCCTTCCATTGGGTCCATGTGTTCCTATGTGTAGCAAGGACTTCTCTGGTCCTCACAGTCCCAGACCAGGAGCTAACAAGACCTCAGTATAGTCACTGGGTGTATAACTGGATTAATTGTTTGTTAGCTTATTCTCTACCGAATTTTCACATAAAATGTACATTATCGGTGTGTTCATGTAGATTTAAGAGTCTGTCACCCTTTGTGGACCCTGTTTGATTCGCTCTTCGTGTAGCATTTCTGTGTACAGGCCCTGGCCTCGTTTCCCAGTTGCGATGTAACTTAAGCATTACGACGATTTGAGCAACTTTTTAAAGAGCTACTGCCTCTGAAATTTTGGTCATAAATGGTATGTCACGGAATGAAGGGTACAGGAACAGTGTTTCGTGTTTTATTTTTATATCCGGCCCATAGATAGCAGCACTCAAGTAATCATCTATTCAAAGCGACGCTGCACGCGACCCGATCATAATGCCCatggtcaatttggtttgacaGTCAATATCCCTATGGGGCAAGTTAGGGACCGTCAGTAAATTACAGAATTTTGGGACAACATTTTAAAACTTTAATAGCTCCAAAATTCAATGACTTAAAAAACTCAAACCAATTGTAAAAATTAATATACAAATATTGGAAGcatttaaccttttactgcagtgggctaaatctgggtcacacagagtgtttcttggtagtcttaaacaaatctgcTTAGAaacaaagtatacacctcacacacatggtcatGGGCTTAAAAATAAGAAGACGCCTTTACcttgtcagatatagagtttaaatgtattccattttgagtttgcatcccaatattacacgttatatacatcacagaatactgaaatgtaacaaaactTTTTGACATAGAAACAAGATTTTCAGAAGTTTTTTCAAAATAATGTTGATttgtgaaattatgaaaaatatgaataacattccactcactcatgaggccactaggtaatTTGACTGCATGAAAGAGATACTGAGACAAAAAAAGAATACGCAACATtaaaatattgtcccatttacattgtgtaatttattgataTCCCTAACTATCCCCAGAGATAGGCTGTCCAAAGTCAAACCGTCTTTTCCCCGATTAGCTGAAGCTGATTGGCTAAATAATTTGGCTAACTATTCCCACCTGCAAACACACAAGACACCCACATTAAACCACACCCCAAAACCAACTCAAGTTTGAATTCAGTCATGGCCGCTAGCATTTGCTAATGAACCAAATCCAGAACAAGGCCAAATTAGGAAGTGCAGTCACCTTTTAAGAGTGTTTCCCAAACAAGCATGTAGAGAGGCATACCGCTCGCGTCATTAGACCATGTGTCAATACTGATTGGATCAAAAGAAAAGCATCACTCTCaaatcagctttctccattcaaatcttaccttaacattataattataattatccCACAATCCTGACGATGGATCACTTCCTATGAGATATTACCACCTACAGTATGGCTGCAAATAAGCTATTGATGCGGTTTATTATGCTTCCCCAataataatgcactaaatcacAGAGTGGGCCCATCACTGCACAAGTGTGACGTGACGCAGAAGGGCACTTTGGGCACGAGTGGTCTGCAAAAGGTTTTTAAGAGCCACGTTACTAACGAAGGCTCTGGGAAAACACCTCGGCTACTAAAGACACATCGTCTAGAAAGTTCTAAGGATCTGATCTGTCAAGATGAAGGCTCTGGGAAACAAGGCTCTGCACAGTAAGTgtatgttttagtgtgtgtgtgtgtgtgtgcgggatATAGCCTTAGTTAATATCACTGGAAGAACACATGCctcaataataaaaaataaaaaactcttTAACCTTGAATGAAA
>TU1333650
GAGGAACCTTCCTGGAACGTCTACTTGTTTTTGGAAATCTAATGGACTATAAGCCCTCAGATTCGAACACATTATTAATATTTGTTCTTCTTTAGTAGAGTCGCACCTGCTTGTTCCAACATTAGGTATTTGGATCAGAGTTTAGTTGACTACTATAGTACTATCAGAGTGAATAGCAGTTGGTAGGTTACTTGCCTCGCAGGGCAGGATAGGACCGTTATTTGCTGATGCGTAACTAAGGTCCAATCTTTCGAATACCGCCACAGACTGCACCCTTTCTGCAGCCCTGACCTAAAATGCCTTTAGACCTGTGATGTGTATTAATTGGATGTATCCCTGTGCATCTCGTGGCGCATAATCCTCAACAGCCTGCCTATTACCCGCGCGCGAATCGTTAAAACGTGCAGTAACAGCCGACTGTCTCATTTCATCCCGTGAAGAGACTGATGATGACGGAGAACAGCGAGATGGAGACCGAGACGCAGCTCCAGCGCTCGCCAAGCAACTTGTCCATCACACCGGTGTCAAAGcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGACCCTGATGCGCAGTAAGAGCGTGGAGAACTTCTTCCAGAGGTCCTACAGTGACGCCCGTCTCCCCCCTGACTTCATCAC
>TU1333649
ATGAAGTTTCACAGACTGTGATGAATATTGTATTTTCCTTCCATTGGGTCCATGTGTTCCTATGTGTAGCAAGGACTTCTCTGGTCCTCACAGTCCCAGACCAGGAGCTAACAAGACCTCAGTATAGTCACTGGGTGTATAACTGGATTAATTGTTTGTTAGCTTATTCTCTACCGAATTTTCACATAAAATGTACATTATCGGTGTGTTCATGTAGATTTAAGAGTCTGTCACCCTTTGTGGACCCTGTTTGATTCGCTCTTCGTGTAGCATTTCTGTGTACAGGCCCTGGCCTCGTTTCCCAGTTGCGATGTAACTTAAGCATTACGACGATTTGAGCAACTTTTTAAAGAGCTACTGCCTCTGAAATTTTGGTCATAAATGGTATGTCACGGAATGAAGGGTACAGGAACAGTGTTTCGTGTTTTATTTTTATATCCGGCCCATAGATAGCAGCACTCAAGTAATCATCTATTCAAAGCGACGCTGCACGCGACCCGATCATAATGCCCatggtcaatttggtttgacaGTCAATATCCCTATGGGGCAAGTTAGGGACCGTCAGTAAATTACAGAATTTTGGGACAACATTTTAAAACTTTAATAGCTCCAAAATTCAATGACTTAAAAAACTCAAACCAATTGTAAAAATTAATATACAAATATTGGAAGcatttaaccttttactgcagtgggctaaatctgggtcacacagagtgtttcttggtagtcttaaacaaatctgcTTAGAaacaaagtatacacctcacacacatggtcatGGGCTTAAAAATAAGAAGACGCCTTTACcttgtcagatatagagtttaaatgtattccattttgagtttgcatcccaatattacacgttatatacatcacagaatactgaaatgtaacaaaactTTTTGACATAGAAACAAGATTTTCAGAAGTTTTTTCAAAATAATGTTGATttgtgaaattatgaaaaatatgaataacattccactcactcatgaggccactaggtaatTTGACTGCATGAAAGAGATACTGAGACAAAAAAAGAATACGCAACATtaaaatattgtcccatttacattgtgtaatttattgataTCCCTAACTATCCCCAGAGATAGGCTGTCCAAAGTCAAACCGTCTTTTCCCCGATTAGCTGAAGCTGATTGGCTAAATAATTTGGCTAACTATTCCCACCTGCAAACACACAAGACACCCACATTAAACCACACCCCAAAACCAACTCAAGTTTGAATTCAGTCATGGCCGCTAGCATTTGCTAATGAACCAAATCCAGAACAAGGCCAAATTAGGAAGTGCAGTCACCTTTTAAGAGTGTTTCCCAAACAAGCATGTAGAGAGGCATACCGCTCGCGTCATTAGACCATGTGTCAATACTGATTGGATCAAAAGAAAAGCATCACTCTCaaatcagctttctccattcaaatcttaccttaacattataattataattatccCACAATCCTGACGATGGATCACTTCCTATGAGATATTACCACCTACAGTATGGCTGCAAATAAGCTATTGATGCGGTTTATTATGCTTCCCCAataataatgcactaaatcacAGAGTGGGCCCATCACTGCACAAGTGTGACGTGACGCAGAAGGGCACTTTGGGCACGAGTGGTCTGCAAAAGGTTTTTAAGAGCCACGTTACTAACGAAGGCTCTGGGAAAACACCTCGGCTACTAAAGACACATCGTCTAGAAAGTTCTAAGGATCTGATCTGTCAAGATGAAGGCTCTGGGAAACAAGGCTCTGCACAGTAAGTgtatgttttagtgtgtgtgtgtgtgtgtgcgggatATAGCCTTAGTTAATATCACTGGAAGAACACATGCctcaataataaaaaataaaaaactcttTAAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940938.1 False 6319 mRNA 0.47 11 36561330 36582092
TU1333650 False 643 TUCP 0.49 3 36551021 36566778
TU1333649 True 1907 lncRNA 0.39 1 36580175 36582081
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486240 LOC106601006 coding upstream 13387 36525639 ~ 36547943 (+)
LOC118938276 LOC106607270 coding upstream 100391 36457354 ~ 36460939 (+)
LOC110486233 LOC106607267 coding upstream 193042 36363555 ~ 36368288 (+)
LOC110486232 rprml coding upstream 221575 36338066 ~ 36339755 (+)
LOC110486228 LOC106607263 coding upstream 393942 36131568 ~ 36167388 (+)
LOC110486244 LOC106607274 coding downstream 50354 36632446 ~ 36664344 (+)
LOC110486247 LOC106607277 coding downstream 90216 36672308 ~ 36677819 (+)
LOC110487537 LOC106601013 coding downstream 103004 36685096 ~ 36687505 (+)
LOC110486255 LOC106607286 coding downstream 267978 36850070 ~ 36854713 (+)
LOC118938285 NA coding downstream 595414 37177506 ~ 37178602 (+)
G1169371 NA non-coding upstream 54021 36505630 ~ 36507309 (+)
G1169444 NA non-coding upstream 58003 36502736 ~ 36503327 (+)
G1169366 LOC106607269 non-coding upstream 135669 36373566 ~ 36425661 (+)
G1169315 NA non-coding upstream 254666 36306456 ~ 36306664 (+)
G1169496 NA non-coding downstream 6416 36588508 ~ 36588731 (+)
G1169498 NA non-coding downstream 11918 36594010 ~ 36594465 (+)
G1169499 NA non-coding downstream 12629 36594721 ~ 36595178 (+)
G1169504 NA non-coding downstream 27086 36609178 ~ 36609443 (+)
G1169506 NA non-coding downstream 34379 36616471 ~ 36616756 (+)
G1169208 NA other upstream 389759 36169896 ~ 36171571 (+)
G1169207 NA other upstream 392999 36167628 ~ 36168331 (+)
G1169121 LOC106607257 other upstream 568730 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1873680 34680909 ~ 34687670 (+)
G1169532 LOC106607276 other downstream 88267 36670359 ~ 36671403 (+)
G1169542 NA other downstream 120180 36702272 ~ 36703736 (+)
G1169468 hsp70b other downstream 188696 36743291 ~ 36819540 (+)
G1169472 NA other downstream 202720 36784812 ~ 36812201 (+)
G1169476 NA other downstream 209819 36791911 ~ 36799968 (+)
G1169489 NA non-coding upstream 10293 36569665 ~ 36569882 (+)
LOC110486241 LOC106607273 other upstream 13397 36551021 ~ 36582092 (+)

Expression

LOC110486241(LOC106607273) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110486241(LOC106607273) Expression in each Bioproject

Bar chart with 19 bars.
LOC110486241(LOC106607273) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network