LOC110486242


Basic Information

Item Value
gene id LOC110486242
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36621087 ~ 36628399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110486242
TCAGTCAGCCTGGAACACGGCCATTCACTGCAAACACTGACACCTGACTTTAGCAATTAATTTGGCAAACGTGCAACCTGGGTCAATTAACCTCAGTGCACTCTTAGAGGCTACAAGAGTTGTTGGCGTGGGGAACACTATCCTCTTGATTGTCAGTGTGTAACCGAATAGACGACTGTTTTCAGGAGGCAATGAACGCCGTAGCCCACGAACAGGACTCGGGTCTTCGACAACAGTTTTTCAACTGCAACCATGCTGATTGTGGGGCGACGTTCAAACGGGAGTGGCGTTTGAAAGAGCACGAGACCGTGCACACAGGAGCACAACCTTTTCAATGCGAAGTGGCTGAATGTGGCGGTAGTTTCTCACGGAAATCTCACCTGAGCCGCCACGCACTTTGCCACACCGGGATGCACATTTGTGAGTTGGACAACTGCTTTCTTCAACACGGACAAGTTGAAGAGACACGCCCATTATGCCCACGGCGAAAAAGACAAGTACATCCTCTATTCCCTTTTAAACGGATCCCCTTGGCCCTGGCATGTtgcaGTTTCCCAAATTGCTTATTGACATTCAAGAAACGGAGGGTGTATAAATTACATTTGAAGGAGCATGGAATATCTTCTGGTTTCAAATGTTCAAAGAGAGGATGTGGAGTCAGGTTTGACACGCATGTCGCTCGCGAAGCCCATGAGGAGAAACATGCAGGTTACCGTTGCCCACAGCCTGAATGCAATCATTTTGAGCAAACCTGGGGTAAAATGCACAAGCACATGGCCAAACACTCAGTAATGGACAACTTGTTGGGCAGGAATCCAGTAGTGGCATTTGTCACTCTCCTGTCCCTGCAGCCACATTCACCTGTAAAGCTGTGCCAGAAGGTGTTTAAGCATGTGGACTCTCTGCGTAGACACAAGCGGACCCACGCCCTGCAGAAGCCTGTCCTGCTGTGCCCCAGCAGTGGCTGCAAGACCTACTTCTCCACTACCTTCAACCTGCAGCACCATATCCGCAAGGCCCACCTGCAGCTCCTCAAGTACCATTGCTACTTCCCCTACTGCCACAGGACCTTTGCCATGCGGGAGAGCCTAAGCAGACACCTGGCTCACCACGACCCAGATGCCAACCCTGAGAAGCAGAAGCGCAAGCGACCCAAGAAGGACTGCCCCTGGTGGAGGACGACCTGCGGCGCCTCATCGCATTGCGCATGAGGGTGTCACGATGGGCCACGGTGGAGGTTAACCTCTCGGGCCTCTTCAACGAGCGCAAGATCCCTCACTTTGTGGAATCGGAGGTCAACCTGTGTAACCTCTTCAGCATCAATCCTCCTTCCCTGCAGAGCCAGGCCCTGTGGAGGTCACACAGCCAGAGGTCACTGTGGTCAAGGGTTTAACTTGTAGTCTGAAAGTGCCGTAGTACTATATTGAGGTTAAGTTGTAAATACTAGTGAAGTACCATTGCTCTTTTAGTTGCACTAAACTGAGCTCTTgaattatttaaaacattttttttatggtACATATAAAGCTATTTGTCTCATTGTTTTCCTGTCTAGAAGCACTTGAGTTTTGTTTGTATCCTTTGCCTGATCAGACCTGAcccaatataaataaataatttgaaGTTGTTTGTCTAAATGTTCAGGGAAGATGGAATTGTGCCACCTAGTTTCTCTCCAACTAAATCATTAATGACGTGTCAGGGTGATCAATCACCCTGCATCAGTCCTTAGTGTAAATACGGCTTGGGTCGTGTCTCTTGATCAGAGGGAGGTAATGACTCGGTTGcattttaatgatgccaaagaatGCTACCGGAACCAGTGAAGCAAATTTTGGCACAAACCATTTTGTGTGATGTCAGTTTACAGACCTAGTGCCACCATGGGTGTGCAGGTTGACTTGCATTGATGTGAACTTTTCCTGACCTATGAGTGATGAGTCCCCCACCATTGATTCTTCAAAGCGCAGGGCTCTGTTCAGGCACCAGGTCCACGTCACTAGAAGACTCCTCAATTCAAATCCCCGGTAGAGGGGGAGAGCTGAGAACTGGCAGTACAAAATTGTCAGCTTTACAATTGGTGTGCCTTTTGAAAGACTGCAGAATAATTTAAGTCTGACCAGTGACGGATTGTATCAAACATTTCTTCCATCAGTCTCTGCCCCTATCTGCCACTTCAACTGAATTGCTCTGTAATGTGGCTAGCTTTCTAGTGTTTGTTCCATCAGAAGCCTGTATGACTTCAGCTGACTGCTAATGGCTAGTCTGCTGTGTTGCTGCCTACAGAGTGCGCTTCGTGATTAAATCACAGTTTccacctgaacttgtccaataaagctatactgaa

Function

NR:

description
PREDICTED: P43 5S RNA-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110486242 True 2347 mRNA 0.48 10 36621087 36628399

Neighbor

gene id symbol gene type direction distance location
LOC110486239 LOC106607271 coding downstream 98327 36505619 ~ 36522760 (-)
LOC118938608 NA coding downstream 104410 36516541 ~ 36516677 (-)
LOC110486237 LOC106601002 coding downstream 178049 36413019 ~ 36470174 (-)
LOC110486236 star3 coding downstream 208591 36397822 ~ 36412496 (-)
LOC110486235 LOC106607388 coding downstream 223390 36389870 ~ 36397697 (-)
LOC110486245 LOC106607276 coding upstream 36746 36665145 ~ 36671427 (-)
LOC110486248 LOC106607280 coding upstream 52066 36680465 ~ 36684617 (-)
LOC110486249 LOC106607278 coding upstream 59760 36688159 ~ 36692640 (-)
LOC110486250 LOC106607281 coding upstream 64781 36693180 ~ 36722611 (-)
LOC110486251 cn37 coding upstream 98300 36726699 ~ 36732207 (-)
G1171056 NA non-coding downstream 10040 36610764 ~ 36611047 (-)
G1171049 NA non-coding downstream 28638 36592167 ~ 36592449 (-)
G1171042 NA non-coding downstream 42852 36577070 ~ 36578235 (-)
G1171040 NA non-coding downstream 47509 36573041 ~ 36573578 (-)
G1171039 NA non-coding downstream 48637 36572237 ~ 36572450 (-)
G1171101 LOC106607274 non-coding upstream 24360 36652759 ~ 36657097 (-)
G1171057 hsp70b non-coding upstream 36770 36665169 ~ 36828425 (-)
G1171116 LOC106601019 non-coding upstream 104857 36733256 ~ 36734575 (-)
LOC118938280 hsp70b non-coding upstream 124617 36750225 ~ 36760370 (-)
G1171122 NA non-coding upstream 125830 36754229 ~ 36762017 (-)
G1171051 NA other downstream 24446 36595832 ~ 36596641 (-)
G1171050 NA other downstream 26561 36594054 ~ 36594526 (-)
G1170998 NA other downstream 127563 36493089 ~ 36493524 (-)
G1170826 NA other downstream 510648 36110102 ~ 36110439 (-)
G1170811 NA other downstream 529670 36090762 ~ 36091417 (-)
G1171149 NA other upstream 255619 36884018 ~ 36884340 (-)
G1171337 NA other upstream 569829 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2552375 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2619753 39248150 ~ 39250310 (-)

Expression


Co-expression Network