LOC110486245 (LOC106607276)


Basic Information

Item Value
gene id LOC110486245
gene name LOC106607276
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36665145 ~ 36671427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940941.1
GGGAACCCTGACTtttctgtcccctcctctccgtctctccaagCCGTGCCAGGGCTCTGTACGTGTAAACAGACATGACCATTCACCGGTGAAGAAAACCCTGGAGAAATTATCCGGAAATCGTATTTGGTTGGAGAAACGGAGGGCATAATAAAGAATAAGCACAATGGCCCCTACAAACGTTAAAGAAACCTGGCTTTCATTTTGTTTCTGTGTAGTTTTGGTCGCTCCGGTTCTGGTCGAAGCCCAGTATGAGAAATATAGCTTTAAGAGTTTCCCACAGAACGACCTAATGCCACTTGAATCTGCGTATGGACATGCTCTGGACCAGTATGCAGCGCAGAACTGGAGGGACAGCATCAAGTACCTGGAATTGAGTTTGCGTCTTCACCGGCTCCTGAAAGACAGCGAAGCATTTTGCAGCCAGAACTGTAGCACTGTCAGTCGGGACAATGATACCCTCTTCGCGGACAGCAGTCTCCGCATCATGCGGCATTTCTTACTCCGGGCTTCATGCCTTAAAAAGTGCAAAACAACATTTCCAGTGTTTACAGTAGCCTACCCAAAGAGGGATGTTCTGGAAGCCTTTGAGAAGAGGATACCCTACCGGTACATACAATATGCTTACTACCAGTTAAACAACATAGAGAGGGCCGTGTCAGCGGCCCACACGTTCCTCCAGAAGAACCCAGAAGACCCCTTCATCTCCAAGAACATGAATTACTACAAGACTCTGTTTGAGCTGGACGAGTACCTCATCGACCACGAGGAGCGGCCCTACGAGGCTGTGTTCCTGAAGGCTGTGAAACTGTATAACTCTGGAGATTTCAGCGCCAGTACTCGGGACATGGAGCAGGCCACTATGGAGTACCTCAAAATGTACGACCTCTGCCTGGCAGGCTGCGAAGGGTCATATGAGGTCACAGAGTACAAAGACTTCTACCCTACACTGGCAGatctctACACGGAAGTTCTGAAGTGTAAAGTGAAGTGTGAGGAGAACCTGAAGCCCAACGTCGGTGGTTTCTTTGTGGAAAAGTTTGTGGCTACCATGTACCACTACCTTCAGTTTGCCTACTATAAACTGAACGACGTGCGTAACGCGGCTCCGTGTGCGGCCAGCTACATGCTGTTTGACGCTAACGACCAGGTGATGCAGCAGAACATGGTGTACTACCGCTTCTACCGAGAACAGTGGGGCCTGGAGGAGACGCACTTCCTGCCTCGCCCGGAGGCACTGAGGTACTTTAACCAAACGACCAAGCAGAGGGAGATGCTGGAGTTTGCACTGAACTACCTCCAGACAGATGATGAGGATGTGGTGAGTCCAGAGGAGGTGGCTGCTCCCTCGGCCCCCCCTGACGCTGAGTTTGAGGGGATAGGAGATTACGAGGAGTCCTTCGTAGCAGACTGGTGGCAGGAACCCAAAACTAAGGGGGATGCTGGGGAACCTGCAGCCTGACCCCAAACACCAACTCCACCATGAACACAACCCCTCCCCCAAACAGAACACTTCTCAAATCCCCTCTCAAAGAATATGGACAGCCCTACAGAGCCAGACCCATCCAGAAATGCCAGGGTACTATATTTAGTACACCCCACACATTAAATTGTTCCATGGTatatatgcaaacacacacagacacatcattTCACAGCTTAAGGAACGCAAAAGGGAGAATTTACATTGCCAGTTGCACACAGTTCCACCATTAGCAAGatcacacaaacacccacacaggaCTTATTGAAGGTCAGAGCTGTCCATGTCGGAACTGAAAGCTAAGTGGTGCATCTGTTTTTGGCATAAGGAGAGGGaaaagaaagggaaaggggggacacctagtcagttgtacaactgaatgccttcaactgaaatgtgtcttccgcatttaacccaacccctcgaAAGGTGTATTATAAATGTTAATACTGTATgactgttattgttgttgttgccttTCTTATTTCATGAAATGATTTGCCTTTGTGACTTAGCCCTGGTAGTATGGCACTGATCTATGCCTTCTGTCAATATCTAGGATGTTTGATGTTGAATTCTGACCTATTGGAGGTGTATTTTGTTGGTCCAACGGTAAAATAAAAATCCACACAAAATGCTAAGTGAACAACAGCAGAACGTGTGGAATAAAGTGACGTATTATTTTA

Function

NR:

description
synaptonemal complex protein SC65-like

GO: NA

KEGG:

id description
K22461 P3H4; endoplasmic reticulum protein SC65

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940941.1 True 2169 mRNA 0.48 7 36665145 36671427

Neighbor

gene id symbol gene type direction distance location
LOC110486242 NA coding downstream 36746 36621087 ~ 36628399 (-)
LOC110486239 LOC106607271 coding downstream 142385 36505619 ~ 36522760 (-)
LOC118938608 NA coding downstream 148468 36516541 ~ 36516677 (-)
LOC110486237 LOC106601002 coding downstream 222107 36413019 ~ 36470174 (-)
LOC110486236 star3 coding downstream 252649 36397822 ~ 36412496 (-)
LOC110486248 LOC106607280 coding upstream 9038 36680465 ~ 36684617 (-)
LOC110486249 LOC106607278 coding upstream 16732 36688159 ~ 36692640 (-)
LOC110486250 LOC106607281 coding upstream 21753 36693180 ~ 36722611 (-)
LOC110486251 cn37 coding upstream 55272 36726699 ~ 36732207 (-)
LOC118938070 LOC106601019 coding upstream 61691 36733118 ~ 36735718 (-)
G1171101 LOC106607274 non-coding downstream 8048 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 54098 36610764 ~ 36611047 (-)
G1171049 NA non-coding downstream 72696 36592167 ~ 36592449 (-)
G1171042 NA non-coding downstream 86910 36577070 ~ 36578235 (-)
G1171040 NA non-coding downstream 91567 36573041 ~ 36573578 (-)
G1171116 LOC106601019 non-coding upstream 61829 36733256 ~ 36734575 (-)
LOC118938280 hsp70b non-coding upstream 81589 36750225 ~ 36760370 (-)
G1171122 NA non-coding upstream 82802 36754229 ~ 36762017 (-)
G1171132 NA non-coding upstream 159493 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 159829 36831256 ~ 36831589 (-)
G1171051 NA other downstream 68504 36595832 ~ 36596641 (-)
G1171050 NA other downstream 70619 36594054 ~ 36594526 (-)
G1170998 NA other downstream 171621 36493089 ~ 36493524 (-)
G1170826 NA other downstream 554706 36110102 ~ 36110439 (-)
G1170811 NA other downstream 573728 36090762 ~ 36091417 (-)
G1171057 hsp70b other upstream 73345 36665169 ~ 36828425 (-)
G1171149 NA other upstream 212591 36884018 ~ 36884340 (-)
G1171337 NA other upstream 526801 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2509347 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2576725 39248150 ~ 39250310 (-)

Expression


Co-expression Network