LOC110486248 (LOC106607280)


Basic Information

Item Value
gene id LOC110486248
gene name LOC106607280
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36680465 ~ 36684617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557694.2
TACTTCCTCAATTTATGCAAGTAAATGCGCGCCCTCAGTATAGACTGGTTATTGCAGCATAGCTGACTAGCTAGCTATATAACTTATTGATTGCATTTCTAGCTAGGTCCATCGTTTGGCTCTTTGATCTTTTCTTGAATTAAACAACATCTCTCTAGAAAAATGATCCCAGAGCTGTCCAGTCCCTCAGTGTGTATGAGGGACCCTCCCAGGGTGGAGGAGATCATCAAGACCATGCAGAAGGCTGGCACCAGCAAGATTCAGGTCATTTCAGACTTTGACATGACCCTCACACGGTTTGCCTACAATGGGAAGCGGTGCCCTACCAGTCACAATATCCTGGACAACAGCAAGCTCATCAGTGAGGAGTGCAAAGCACAGCTGAAGGACCTGCTCAACACATATTACCCCATAGAGATTGATTCCAAACGGACAGCGGAGGAGAAGCTGCCCCTCATGGTGGAGTGGTGGACTAAAGCCCATACTCTTCTGGTGCAGCAGCGCATCAGGAAAGACCTGCTGCAGGATGTGGTGAAGGAGTCTGATGCTATGCTCAGGGAGGGCTACCAGCTGTTCTTTGACCACCTGCAGGAGCACAGCATCCCTCTGCTCATCTTCTCTGCTGGGCTAGGAGACGTGCTGGAGGAGGTGATCCGCCAGGCCGGGGTCTTTCACCCCAACGTCAAGGTCTTCTCCAACTACATGGACTTTGATGAGACTGGAGTGCTGAAGGCCTTCAAAGGGGAGCTGATCCACATCTATAACAAGAGGGAGGGAGCTCTGCTGAACACGGGCCACTTCCAGGAGCTCAAGTCACGCCACAACGTCCTGCTGTTGGGAGACTCTCTGGGGGACCTGACCATGGCTGATGGGGTGCACAGCATGGAGAACATCCTCAAGATCGGCTTCCTCAACGACAAGgtggaggagaggaagacgtcCTACCTGAATGCTTATGACATCGTGCTGGTGAAGGATGAGACCATGGAAGTGCTGAACGCCCTGCTGCTCCACCTCACCAGCACCAAGTGACCTGGCCATGAAATTAatctcactggccaatcagtAACGAGCCTTCCGACGCTACAGGAAGTATGTCGTACTGGTTAAGGAAGCTCTTGCTCAGGAAGTGCCAGTAGTCAGATACCATGAGTCAAGTCAGAATGGTATTGTTTTTGGTTTGTCTTTTACTAAAGCTCCAATGGCTGTTTGTGTGGGCCGCTGGGATGGATCCCAGACTGTGTTTTGGAGTCTCCCTTCCATGCTCCTCCAGTTGAATCCTTGTTGAACACTTACAACTTGAGAGCAGCATCCTTTACAGTCCTACAATTTGATTCGATTTCCTCGACAGCCCTACTGTCACATTCTGAATTGTTTACGAACCGTCATTAGTCCAACTGAAATGGGACAGGAAAACTAGGTGACTTCCCCATCTGGTAAATGTGTATTGGGTTCGTGGGGAGAGAAATGTTACTGGTGATATGTCTACATATGAGGAATAtgcagtagcagtcaaaagtttggacacacctacacattcatgggtttttctttatttttactattttctacattttagaataatagtgaagacatccaaactatgaaataacacatttggaatcctgtagtaaccaaacaggtgttaaa

Function

NR:

description
cytosolic 5'-nucleotidase 3-like

GO: NA

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557694.2 True 1650 mRNA 0.48 9 36680465 36684617

Neighbor

gene id symbol gene type direction distance location
LOC110486245 LOC106607276 coding downstream 9038 36665145 ~ 36671427 (-)
LOC110486242 NA coding downstream 52066 36621087 ~ 36628399 (-)
LOC110486239 LOC106607271 coding downstream 157705 36505619 ~ 36522760 (-)
LOC118938608 NA coding downstream 163788 36516541 ~ 36516677 (-)
LOC110486237 LOC106601002 coding downstream 237427 36413019 ~ 36470174 (-)
LOC110486249 LOC106607278 coding upstream 3542 36688159 ~ 36692640 (-)
LOC110486250 LOC106607281 coding upstream 8563 36693180 ~ 36722611 (-)
LOC110486251 cn37 coding upstream 42082 36726699 ~ 36732207 (-)
LOC118938070 LOC106601019 coding upstream 48501 36733118 ~ 36735718 (-)
LOC110486258 NA coding upstream 49954 36734571 ~ 36737505 (-)
G1171101 LOC106607274 non-coding downstream 23368 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 69418 36610764 ~ 36611047 (-)
G1171049 NA non-coding downstream 88016 36592167 ~ 36592449 (-)
G1171042 NA non-coding downstream 102230 36577070 ~ 36578235 (-)
G1171040 NA non-coding downstream 106887 36573041 ~ 36573578 (-)
G1171116 LOC106601019 non-coding upstream 48639 36733256 ~ 36734575 (-)
LOC118938280 hsp70b non-coding upstream 68399 36750225 ~ 36760370 (-)
G1171122 NA non-coding upstream 69612 36754229 ~ 36762017 (-)
G1171132 NA non-coding upstream 146303 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 146639 36831256 ~ 36831589 (-)
G1171051 NA other downstream 83824 36595832 ~ 36596641 (-)
G1171050 NA other downstream 85939 36594054 ~ 36594526 (-)
G1170998 NA other downstream 186941 36493089 ~ 36493524 (-)
G1170826 NA other downstream 570026 36110102 ~ 36110439 (-)
G1170811 NA other downstream 589048 36090762 ~ 36091417 (-)
G1171057 hsp70b other upstream 60155 36665169 ~ 36828425 (-)
G1171149 NA other upstream 199401 36884018 ~ 36884340 (-)
G1171337 NA other upstream 513611 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2496157 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2563535 39248150 ~ 39250310 (-)

Expression


Co-expression Network