LOC110486250 (LOC106607281)


Basic Information

Item Value
gene id LOC110486250
gene name LOC106607281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36693180 ~ 36722611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940942.1
CAGATAGGAAGAGGGGAGAAAACGGAGAACCCAGAAGTGAAATCAGTGGTCCACGCCGACAGCGAAGCCACAGATAGAAGGAGCAGTTAGCGGGATCATTGCCGGCTCATATCGTTTCTCAACCGAAACAATCCAAATCTTCTCAACAGAAAACCTGGGAGATCTTTTCCACAACTCTCAAGATATAAAGaccaCTGTTCTCTGATCTACCATGTCAGCCAAAGCCATCTCGGAGCAGACGGGGAAGGAGTTCCTCTATAAGTATATCTGTACATCTGCAGCGGTCCAGAACCGGTTCCGCTATGCCAACGTGACGACTGAGACCGACTTTGACCGGCTGGCACAGGACCACCCCTGGCTGCTCACTGAGCGGCTGGTAGTGAAGCCAGACCAGCTGATCAAGCGACGGGGGAAGCTGGGACTGGTAGGTGTCAACCTGGACCTGAAAGGTGTCCGAGAGTGGCTGAAGACCCACCTCATGAGAGAGACCATGgtGGGAAAAGCAAAGGGGATCCTGAAGAACTTCCTCATCGAGCCATTCGTAGCCCACAAGCAGGAAGAGGAGTTCTACGTGTGTATCTACGCCACACGGGAGGGAGACTACGTGTTGTTCCACCATGAAGGAGGGGTAGACGTGGGGGATGTGGACGCTAAGGCCAGTAAGCTTCTGGTAGGAGTGGACGAGAAGCTGACTGAAGACGCAGTGAGGAaacagctcctgacccatgtcgcTGCGGACAAAAGAGCGGTTCTGGCCAGTTTCATCGTTGGATTGTTCAACCTGTATGAAGACCTGTACTTCACCTACCTTGAGATCAACCCACTGGTGGTCACGAAGGATGGCGTGTTTGTGCTGGACATGGCGGCTAAGATCGATGCCACGGCGGACTACCTCTGTAAGGCCAAGTGGGGCGACGTGGAGTTCCCTCCACCCTTTGGCAGGGAGGCCTACCCTGAGGAGGCCTATATTGCAGACCTGGATGCCAAGAGTGGTGCCAGTCTCAAACTCACCCTGCTCAACCCCCGTGGAAGAATCTGGACCATGGTGGCAGGAGGAGGGGCTTCCGTCGTCTACAGTGACACCATCTGTGACCTGGGTGGAGTTGACGAGCTGGCCAATTACGGGGAGTATTCAGGAGCGCCCAGCGAACAGCAGACCTATGACTATGCCAAGACCATCCTGTCCCTGATGACCCGCGAGAAACACCCCGACGGAAAAGTCCTGATCATCGGAGGAAGCATTGCAAACTTCACTAACGTTGCAGCCACATTTAAGGGCATTGTCCGAGCCATTCGGGACTACCAGGGCCCCATAAAGGAGCATGAGATCACCATATTTGTCCGACGTGGGGGCCCCAACTACCAGGAAGGCCTCAGGGTCATGGGCGAAGTGGGTAAGACTACTGGCATCCCCATCCATGTCTTCGGCACAGAGACTCACATGACTGCCATTGTCGGCATGGCGCTGGGCCACCGACCAATACCCAAAGAGCCTCCCGTCGCCGCCCACACCGCCAACTTCCTGCTCAACTCCAGTGCCAGTTCATCTacCCCAGCCTCCAGCAGGACAGCCTCCTTCTCTGAGAACAAGGCTGGCACCGGGGCCTCTGCTGCCAAGAAGGCCAAGTCAGGGGCCCCTCCAGAGCGACAGGTGACGTCAGACAGTCCAGGAGTCAAGGCGTCAACTCTCTTCAGCAAGCAGACCAAGTCCATCGTGTGGGGCATGCAGACTCGGGCCGTGCAGGGCATGCTGGACTTTGACTACACCTGCTCCAGGGATGATCCCTCTGTGTCTGCCATGGTCTACCCATTCACtggGGACCACAAGCAGAAGTTCTACTGGGGCCATAAGGAGATCCTGTTGCCTGTCTATAAGAACATGGGCGACGCCATGAAGAAACACCCGGAGGTGGACGTGCTCATCAGCTTCGCCTCGCTCCGCTCTGCCTTCGACAGCACCATGGAGACCATGCAGTACCCGCAGATCCACACCATCGCCATCATAGCCGAGGGCATCCCTGAAGCCCAGACCAGGAAGATCATTAAGAGGGCGGACGAGAAGGGTATCACTATCATCGGCCCGGCAACGGTTGGAGGGATCAAGCCTGGCTGTTTTAAGATCGGGAACACAGGGGGCATGCTGGATAACATCCTGGCCTCTAAGCTGTACCGTCCAGGCAGTGTGGCCTACGTGTCCCGCTCTGGAGGCATGTCCAACGAGCTCAACAACATCATCTCCCGCACCACCGACGGAGTCTACGAGGGAGTGGCCATTGGAGGAGACCGATACCCAGGCTCAATCTACACAGACCATGTGCTGAGGTACCAGGACACCCCAGGGGTAGAGATGATCGTAATGCTGGGAGAGATTGGCGGCACAGAGGAGTATAGGATCTGCCAGGGCATCAAGTCAGGCAGGATCACCAAGCCTGTGGTGAGCTGGTGCATCGGGACCTGTGCCACCATGTTCTCCTCAGAGgTCCAGTTTGGTCATGCTGGAGCGTGTGCCAACCAGGCCTCGGAGACAGCCGTGGCCAAGAACCTGGCTCTGAAGGAGGCCGGAGCCTTTGTACCCAAGAGCTTTGACGAGCTGGGAGATGTCATCAAATCAGTGTATGACGACCTCGTTGGCAAAGGAGTCATCGTTCCAGCTATGGAGGTGCCCCCGCCCACTGTGCCAATGGACTACTCTTGGGCCCGGGAGCTGGGTCTGATCCGTAAGCCAGCCTCCTTTATGACCAGTATCTGTGATGAGAGGGGCCAGGAGCTCATCTACGCTGGAATGCCCATCACTGAGGTGTTCAAGTCAGAGATGGGCCTGGGAGGAACCCTGGGACTGCTCTGGTTCCAGAGGAGGCTGCCCAGTTATGCTGCCAAGTTCATTGAGATGTGTCTGATGGTGACTGCTGACCATGGTCCTGCCGTCTCCGGTGCCCACAACACCATCGTGTGTGCCCGTGCTGGCAAAGACCTCATCTCTAGCCTCACCTCTGGCCTGCTCACCATCGGGGACCGGTTCGGAGGGGCCCTGGACGCTGCAGCCAAGCAGTTCAGCAAGGCGTTTGACAGTGGCATGCTGCCCATGGAGTTTGTCAataagatgaagaaggagggcaACCTGATCATGGGCATCGGACACCGGGTCAAGTCGATCAACAACCCAGACATGCGGGTGCAGATCCTGAAGGACTTTGTGAAGAAGAACTTCCCCTCCACCCAGCTGTTGGACTACGCTATGGATGTAGAGAAGATCACCACCGCCAAGAAACCCAACCTGATCCTGAATGTGGACGGTTTCATCGGAGTAGCCTTTGTGGACCTGCTCAGGAACTGTGGTGGATTTACACGGGACGAGGCTGATGAGTTTGTGGAGATCGGAGCACTGAATGGAATCTTTGTCCTGGGGCGGAGCATGGGCTTCATCGGACACTACCTGGATCAGAAGAGGCTGAAACAGGGTCTGTACCGTCACCCTTGGGACGACATCTCCTACGTTCTCCCCGAACACATGTCCATGTAACCACGGAAACCAGgccatggaccccccccccccccctccccccagttaCCCCACCACCACTGTACCCTAACCTCCACCCCCACCTGTGCTGTGTTTGGTCAGCCCCAAGTGGTGGGAGAGCAACAATGAGGACTGATATTATTATAGATGTGTCTTTCCAACAGTAATAAGGACAACCCTTTTAAATGAATACAGTTTCAGTTTTTAAAAATCAGTTGGCTGATCTAACATGCTGCAACCCCATTAATAATAGCAAGGCCTGCAAAACTGTGAAGCcactctgactgtgtgtgtgtctgctagaGAGATCAAGCAAGCTGCAGAGAGTGTGAAAAGAGGCTCATTCGTTGGTTGACCCTTAATAGTGTGGGAGTGCAGTTAATGCAATTCTCTTCCCAAGATTACCAGTAGGGATACAGATGATTGTCTTCCTATTTActgccaatactactactactactactactactactactactactactactactactactactacttctatacCACACCTATGCCTACAGTGAAGTACGTTGATGAGACTATCTCCCACTATCATCTCTCTCCGTAAACCAAGCATGTGTCTGTGTATCACAGACTTCCTGTGTGTCGCTGTGCAGTTCTCTTTCTTAAGTGTGTCGGTGCCATATTAAAATCATACGCTTTCTATCAGGGGTGAGCTGTAGTGCAATAATACTAGCTACTGCTTTACAGTTATATAGATTATAACTTTATTTATGTATAGATGTTTTAACAGCCGAGTAAATAAATGTAATAGATAGTATTAGCATACATTTTTGATGTACTGTAAATGCCCATGAAACTGTTGTGTTTAGACCGTTCGATATGCAGCTGACCGAGCATATTGGGCTGTAAATACAGTGAAAAGCTCATACTGTGTCCAGTATGGCAAAGGTACCATAGAATGCAGCATTATTTATCTGAACGTTACTAGCTAGACTAGCTCCATTGTGACCGGCTATTTCTCGTAAGATCTGCCTGTACTATTTGTGTTGTCATGTCAACACAATTTGTTTGATTTGTGATTAGTGAACTGAACGTGCCTCTGTAGAGATGTGTTGTAATATATTTTCAGAACGTTGTGACTGAGTATATTAAAGATGACCCATTGGAACACA
>XM_036940943.1
CAGATAGGAAGAGGGGAGAAAACGGAGAACCCAGAAGTGAAATCAGTGGTCCACGCCGACAGCGAAGCCACAGATAGAAGGAGCAGTTAGCGGGATCATTGCCGGCTCATATCGTTTCTCAACCGAAACAATCCAAATCTTCTCAACAGAAAACCTGGGAGATCTTTTCCACAACTCTCAAGATATAAAGaccaCTGTTCTCTGATCTACCATGTCAGCCAAAGCCATCTCGGAGCAGACGGGGAAGGAGTTCCTCTATAAGTATATCTGTACATCTGCAGCGGTCCAGAACCGGTTCCGCTATGCCAACGTGACGACTGAGACCGACTTTGACCGGCTGGCACAGGACCACCCCTGGCTGCTCACTGAGCGGCTGGTAGTGAAGCCAGACCAGCTGATCAAGCGACGGGGGAAGCTGGGACTGGTAGGTGTCAACCTGGACCTGAAAGGTGTCCGAGAGTGGCTGAAGACCCACCTCATGAGAGAGACCATGgtGGGAAAAGCAAAGGGGATCCTGAAGAACTTCCTCATCGAGCCATTCGTAGCCCACAAGCAGGAAGAGGAGTTCTACGTGTGTATCTACGCCACACGGGAGGGAGACTACGTGTTGTTCCACCATGAAGGAGGGGTAGACGTGGGGGATGTGGACGCTAAGGCCAGTAAGCTTCTGGTAGGAGTGGACGAGAAGCTGACTGAAGACGCAGTGAGGAaacagctcctgacccatgtcgcTGCGGACAAAAGAGCGGTTCTGGCCAGTTTCATCGTTGGATTGTTCAACCTGTATGAAGACCTGTACTTCACCTACCTTGAGATCAACCCACTGGTGGTCACGAAGGATGGCGTGTTTGTGCTGGACATGGCGGCTAAGATCGATGCCACGGCGGACTACCTCTGTAAGGCCAAGTGGGGCGACGTGGAGTTCCCTCCACCCTTTGGCAGGGAGGCCTACCCTGAGGAGGCCTATATTGCAGACCTGGATGCCAAGAGTGGTGCCAGTCTCAAACTCACCCTGCTCAACCCCCGTGGAAGAATCTGGACCATGGTGGCAGGAGGAGGGGCTTCCGTCGTCTACAGTGACACCATCTGTGACCTGGGTGGAGTTGACGAGCTGGCCAATTACGGGGAGTATTCAGGAGCGCCCAGCGAACAGCAGACCTATGACTATGCCAAGACCATCCTGTCCCTGATGACCCGCGAGAAACACCCCGACGGAAAAGTCCTGATCATCGGAGGAAGCATTGCAAACTTCACTAACGTTGCAGCCACATTTAAGGGCATTGTCCGAGCCATTCGGGACTACCAGGGCCCCATAAAGGAGCATGAGATCACCATATTTGTCCGACGTGGGGGCCCCAACTACCAGGAAGGCCTCAGGGTCATGGGCGAAGTGGGTAAGACTACTGGCATCCCCATCCATGTCTTCGGCACAGAGACTCACATGACTGCCATTGTCGGCATGGCGCTGGGCCACCGACCAATACCCAAAGAGCCTCCCGTCGCCGCCCACACCGCCAACTTCCTGCTCAACTCCAGTGCCAGTTCATCTacCCCAGCCTCCAGCAGGACAGCCTCCTTCTCTGAGAACAAGGCTGGCACCGGGGCCTCTGCTGCCAAGAAGGCCAAGTCAGGGGCCCCTCCAGTCAAGGCGTCAACTCTCTTCAGCAAGCAGACCAAGTCCATCGTGTGGGGCATGCAGACTCGGGCCGTGCAGGGCATGCTGGACTTTGACTACACCTGCTCCAGGGATGATCCCTCTGTGTCTGCCATGGTCTACCCATTCACtggGGACCACAAGCAGAAGTTCTACTGGGGCCATAAGGAGATCCTGTTGCCTGTCTATAAGAACATGGGCGACGCCATGAAGAAACACCCGGAGGTGGACGTGCTCATCAGCTTCGCCTCGCTCCGCTCTGCCTTCGACAGCACCATGGAGACCATGCAGTACCCGCAGATCCACACCATCGCCATCATAGCCGAGGGCATCCCTGAAGCCCAGACCAGGAAGATCATTAAGAGGGCGGACGAGAAGGGTATCACTATCATCGGCCCGGCAACGGTTGGAGGGATCAAGCCTGGCTGTTTTAAGATCGGGAACACAGGGGGCATGCTGGATAACATCCTGGCCTCTAAGCTGTACCGTCCAGGCAGTGTGGCCTACGTGTCCCGCTCTGGAGGCATGTCCAACGAGCTCAACAACATCATCTCCCGCACCACCGACGGAGTCTACGAGGGAGTGGCCATTGGAGGAGACCGATACCCAGGCTCAATCTACACAGACCATGTGCTGAGGTACCAGGACACCCCAGGGGTAGAGATGATCGTAATGCTGGGAGAGATTGGCGGCACAGAGGAGTATAGGATCTGCCAGGGCATCAAGTCAGGCAGGATCACCAAGCCTGTGGTGAGCTGGTGCATCGGGACCTGTGCCACCATGTTCTCCTCAGAGgTCCAGTTTGGTCATGCTGGAGCGTGTGCCAACCAGGCCTCGGAGACAGCCGTGGCCAAGAACCTGGCTCTGAAGGAGGCCGGAGCCTTTGTACCCAAGAGCTTTGACGAGCTGGGAGATGTCATCAAATCAGTGTATGACGACCTCGTTGGCAAAGGAGTCATCGTTCCAGCTATGGAGGTGCCCCCGCCCACTGTGCCAATGGACTACTCTTGGGCCCGGGAGCTGGGTCTGATCCGTAAGCCAGCCTCCTTTATGACCAGTATCTGTGATGAGAGGGGCCAGGAGCTCATCTACGCTGGAATGCCCATCACTGAGGTGTTCAAGTCAGAGATGGGCCTGGGAGGAACCCTGGGACTGCTCTGGTTCCAGAGGAGGCTGCCCAGTTATGCTGCCAAGTTCATTGAGATGTGTCTGATGGTGACTGCTGACCATGGTCCTGCCGTCTCCGGTGCCCACAACACCATCGTGTGTGCCCGTGCTGGCAAAGACCTCATCTCTAGCCTCACCTCTGGCCTGCTCACCATCGGGGACCGGTTCGGAGGGGCCCTGGACGCTGCAGCCAAGCAGTTCAGCAAGGCGTTTGACAGTGGCATGCTGCCCATGGAGTTTGTCAataagatgaagaaggagggcaACCTGATCATGGGCATCGGACACCGGGTCAAGTCGATCAACAACCCAGACATGCGGGTGCAGATCCTGAAGGACTTTGTGAAGAAGAACTTCCCCTCCACCCAGCTGTTGGACTACGCTATGGATGTAGAGAAGATCACCACCGCCAAGAAACCCAACCTGATCCTGAATGTGGACGGTTTCATCGGAGTAGCCTTTGTGGACCTGCTCAGGAACTGTGGTGGATTTACACGGGACGAGGCTGATGAGTTTGTGGAGATCGGAGCACTGAATGGAATCTTTGTCCTGGGGCGGAGCATGGGCTTCATCGGACACTACCTGGATCAGAAGAGGCTGAAACAGGGTCTGTACCGTCACCCTTGGGACGACATCTCCTACGTTCTCCCCGAACACATGTCCATGTAACCACGGAAACCAGgccatggaccccccccccccccctccccccagttaCCCCACCACCACTGTACCCTAACCTCCACCCCCACCTGTGCTGTGTTTGGTCAGCCCCAAGTGGTGGGAGAGCAACAATGAGGACTGATATTATTATAGATGTGTCTTTCCAACAGTAATAAGGACAACCCTTTTAAATGAATACAGTTTCAGTTTTTAAAAATCAGTTGGCTGATCTAACATGCTGCAACCCCATTAATAATAGCAAGGCCTGCAAAACTGTGAAGCcactctgactgtgtgtgtgtctgctagaGAGATCAAGCAAGCTGCAGAGAGTGTGAAAAGAGGCTCATTCGTTGGTTGACCCTTAATAGTGTGGGAGTGCAGTTAATGCAATTCTCTTCCCAAGATTACCAGTAGGGATACAGATGATTGTCTTCCTATTTActgccaatactactactactactactactactactactactactactactactactactactacttctatacCACACCTATGCCTACAGTGAAGTACGTTGATGAGACTATCTCCCACTATCATCTCTCTCCGTAAACCAAGCATGTGTCTGTGTATCACAGACTTCCTGTGTGTCGCTGTGCAGTTCTCTTTCTTAAGTGTGTCGGTGCCATATTAAAATCATACGCTTTCTATCAGGGGTGAGCTGTAGTGCAATAATACTAGCTACTGCTTTACAGTTATATAGATTATAACTTTATTTATGTATAGATGTTTTAACAGCCGAGTAAATAAATGTAATAGATAGTATTAGCATACATTTTTGATGTACTGTAAATGCCCATGAAACTGTTGTGTTTAGACCGTTCGATATGCAGCTGACCGAGCATATTGGGCTGTAAATACAGTGAAAAGCTCATACTGTGTCCAGTATGGCAAAGGTACCATAGAATGCAGCATTATTTATCTGAACGTTACTAGCTAGACTAGCTCCATTGTGACCGGCTATTTCTCGTAAGATCTGCCTGTACTATTTGTGTTGTCATGTCAACACAATTTGTTTGATTTGTGATTAGTGAACTGAACGTGCCTCTGTAGAGATGTGTTGTAATATATTTTCAGAACGTTGTGACTGAGTATATTAAAGATGACCCATTGGAACACA

Function

NR:

description
ATP-citrate synthase isoform X2

GO: NA

KEGG:

id description
K01648 ACLY; ATP citrate (pro-S)-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940942.1 False 4662 mRNA 0.53 28 36693180 36722611
XM_036940943.1 True 4632 mRNA 0.53 27 36693180 36722611

Neighbor

gene id symbol gene type direction distance location
LOC110486249 LOC106607278 coding downstream 540 36688159 ~ 36692640 (-)
LOC110486248 LOC106607280 coding downstream 8563 36680465 ~ 36684617 (-)
LOC110486245 LOC106607276 coding downstream 21753 36665145 ~ 36671427 (-)
LOC110486242 NA coding downstream 64781 36621087 ~ 36628399 (-)
LOC110486239 LOC106607271 coding downstream 170420 36505619 ~ 36522760 (-)
LOC110486251 cn37 coding upstream 4088 36726699 ~ 36732207 (-)
LOC118938070 LOC106601019 coding upstream 10507 36733118 ~ 36735718 (-)
LOC110486258 NA coding upstream 11960 36734571 ~ 36737505 (-)
LOC110512845 hsp70b coding upstream 20683 36743294 ~ 36746458 (-)
LOC118938280 hsp70b coding upstream 27614 36750225 ~ 36760370 (-)
G1171101 LOC106607274 non-coding downstream 36083 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 82133 36610764 ~ 36611047 (-)
G1171049 NA non-coding downstream 100731 36592167 ~ 36592449 (-)
G1171042 NA non-coding downstream 114945 36577070 ~ 36578235 (-)
G1171040 NA non-coding downstream 119602 36573041 ~ 36573578 (-)
G1171116 LOC106601019 non-coding upstream 10645 36733256 ~ 36734575 (-)
G1171122 NA non-coding upstream 31618 36754229 ~ 36762017 (-)
G1171132 NA non-coding upstream 108309 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 108645 36831256 ~ 36831589 (-)
G1171051 NA other downstream 96539 36595832 ~ 36596641 (-)
G1171050 NA other downstream 98654 36594054 ~ 36594526 (-)
G1170998 NA other downstream 199656 36493089 ~ 36493524 (-)
G1170826 NA other downstream 582741 36110102 ~ 36110439 (-)
G1170811 NA other downstream 601763 36090762 ~ 36091417 (-)
G1171057 hsp70b other upstream 22161 36665169 ~ 36828425 (-)
G1171149 NA other upstream 161407 36884018 ~ 36884340 (-)
G1171337 NA other upstream 475617 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2458163 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2525541 39248150 ~ 39250310 (-)

Expression


Co-expression Network