LOC118938070 (LOC106601019)


Basic Information

Item Value
gene id LOC118938070
gene name LOC106601019
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36733118 ~ 36735718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118938070
ATGGCCTCCAAACTTGGTGAAAGCTGGGAGGAAAAGATCCCGCTGGCCAGTGGCGGCCCGGGACTACGGCGTTCGCTCACTCGCCGTGGCCGATGACATCGCTGATGAGAAGTGGCAACTGAACGCCTGTGTGTTGGTGGCACAGTCAGAGATGAAGCTTGTCAACTTTAAATCCGGTGTTGCCCACTTTGAAAGAGCTTTGGACAGGGCTAAGGTTCTCCAGGATGACCCTGCTAGGGATGCCATCCAGAAGGCTCTCCGTGAGGCAAGGCAATGTTTATGAGCGCTCATCAGAAGATGACTGAAGAGTAGCCACAGACAGATGGTCAAGGACAATGTAATAAAAACAGTCTTTTAAACATGCTTCTCCGACCTCCACTTGAGTTTTTGTTGTATACTTttattttctttgcttatttatGTATAGAAAAATTGCACACATACAAAATGTACATACCCCTTACAGAATAAACTTAGGAGATACAGCTGAGGAAAGGACTTCACTTGGGTGGGAACAAAATTGAATTATGCTATGATGTATTACTTTGAAAATCTATTATTCATCTACACTGGAATTCAATCCTTACAGCTGTGTAGTATAAGTTGATGTCTTCCTTTTCATTGATGTGTTTCCTGTAGTACTGCAACACATGCACGTTTCCAATGTAATATTTTGTAGTGTCTCATTAATAAAGCGTTTTGTTAAGCC

Function

NR:

description
tetratricopeptide repeat protein 25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118938070 True 709 mRNA 0.43 4 36733118 36735718

Neighbor

gene id symbol gene type direction distance location
LOC110486251 cn37 coding downstream 911 36726699 ~ 36732207 (-)
LOC110486250 LOC106607281 coding downstream 10507 36693180 ~ 36722611 (-)
LOC110486249 LOC106607278 coding downstream 40478 36688159 ~ 36692640 (-)
LOC110486248 LOC106607280 coding downstream 48501 36680465 ~ 36684617 (-)
LOC110486245 LOC106607276 coding downstream 61691 36665145 ~ 36671427 (-)
LOC110512845 hsp70b coding upstream 7576 36743294 ~ 36746458 (-)
LOC118938280 hsp70b coding upstream 14507 36750225 ~ 36760370 (-)
LOC118938281 hsp70b coding upstream 21390 36757108 ~ 36760119 (-)
LOC118938277 hsp70b coding upstream 28263 36763981 ~ 36767309 (-)
LOC118938282 hsp70b coding upstream 35157 36770875 ~ 36774178 (-)
G1171101 LOC106607274 non-coding downstream 76021 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 122071 36610764 ~ 36611047 (-)
G1171049 NA non-coding downstream 140669 36592167 ~ 36592449 (-)
G1171042 NA non-coding downstream 154883 36577070 ~ 36578235 (-)
G1171040 NA non-coding downstream 159540 36573041 ~ 36573578 (-)
G1171122 NA non-coding upstream 18511 36754229 ~ 36762017 (-)
G1171132 NA non-coding upstream 95202 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 95538 36831256 ~ 36831589 (-)
G1171068 NA non-coding upstream 120159 36855877 ~ 36856985 (-)
G1171051 NA other downstream 136477 36595832 ~ 36596641 (-)
G1171050 NA other downstream 138592 36594054 ~ 36594526 (-)
G1170998 NA other downstream 239594 36493089 ~ 36493524 (-)
G1170826 NA other downstream 622679 36110102 ~ 36110439 (-)
G1170811 NA other downstream 641701 36090762 ~ 36091417 (-)
G1171057 hsp70b other upstream 9054 36665169 ~ 36828425 (-)
G1171149 NA other upstream 148300 36884018 ~ 36884340 (-)
G1171337 NA other upstream 462510 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2445056 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2512434 39248150 ~ 39250310 (-)

Expression


Co-expression Network