LOC110486258


Basic Information

Item Value
gene id LOC110486258
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36734571 ~ 36737505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940956.1
aactgaaatcataacCTAACAATGCAAGCGATGGCTGCAGGATGAAGTTATGAAGATGAACTGCAGAAACGTGCAGTTGACTGCAGTCAAAACGTCATGACCTTTTGATGACATGATTTTTGTAATGTTCATGCTGTTGACATGTTGGCGCAAGTCGGAGAATTATTATCCCCATAATGCAACATACTTTGAAAGGGCGACAAAAGTGATCCGCTCGAACGTGCCCTCTTGGGGACAGGGCAGCACAAGTTAACAATGCAGTGTGTGCATGCTCGGTTGCTCGTTTGTTGACTGAGTGGCATGACAAAAGATGCATTACCTCTCCCTGCTGTGGAGTTTGTGTAATGAGTGATCTGATTCAATCGCGGGTGTCCAGGAACCGACTAGTAGCGTAGATGATATATCTGGGAAAGCTCTAATGATAGCGAAACAATAAACATTTAGCCATTCATAGCTAGCTATTTAGCTATGACCATTTACTATATTTGCTGAGAGTTATGCTTGTGGTTGAATGCAATCTCTGTGTATATGCATTTAGACAATTTCTTCTGTTACACAGCTGTCAATCGAAAACGTATGCACTGGTTGCCAAGTCGTTTGGGCTGTCTTCTCAGTCAGTGGCTTTTTTGCTACCTCAAGTCCACACTATATGCATGTCAAGTTTGTATTCGTAGCTAATGACAGTTTATACATTTCTTTCAGACATTGATTCTTCAGCCAGATGACAAAAATGGTCTGGTTGCCAGATCCAAATGTTATGTAAAGATGAGAGATTGTGATAATGCATTGAGGGACGCAGAGGCCTCTCTCTATGAGGACAAATCATTCTTAAAGGGTTTGTATCAGAAAGCGGAAGCTTTATACACCATGGGAGACTTTGAGTTTGACCTGGTGTTTTACCACAGGGGGCACAAACAGTGGCCAGAGCTGCAGGAATTTAGACTGGGAATCCAGAAGGCCCAAGAGGCTATCGACAACTCTGTGGGCTGGAAGAAGGGACGGCCGAAGGGGCTGATTCACCCCCTGAGAAGGGAGATGAGGCAGCAGAACAAGAAGACGCCTATGAGTGAGAAGACAGCCAAGCAGCTTCTGGGAGAGTCTACAGCGATAAGGAGAAGCTACTGAAAGATGAAGGTAGGGCAGCCAGAAATATTTTACTTAGCCTGTTTCTGTATGTTCACTATTTTGTCTTAGTTTCAGTACACAATCAATACACTGTCACACTTGGGAAGATGCTCTTTTATCACGTACCCTATCTGGAGAATTGGCCTCTACGTGTCCTTTGATTCCCTTTACACATTCATTATTATCAGCATGAATTACAGAGCCCAGTGTGTGGTAAAGGGCAAATATTCCACTCAAGTCATAAATGGCCTCCAAACTTGGTGAAAGGTAAGATGCGGGGAGGGGAGAGACTGCAGGACCTATCTGGACACACGCACTGATTTCTGGCGCCAGCAGAAGCCCATCTATGCGCGGGAGAGAGACCGCAAGCTCATGCAGCAGAAGTGGAACAAGACCCGGCAGAACCCTCCCTCTGATCCCACCCGTTTTGTACTCAAGAGCCTGGAAGAGATTGATGCTGATAAGACAGAACAGACCCAAGGATGAATATGGTAGTTTGATGCTTATCAATACATCCTGGTCAACGGTAAACTCTTATTAGCATGTATTGGGGGCATGATCTTTGGTAcatctttctcactcatcattattcacgattcattcatatCCTTAATCATGGTAGCATTCATATTAATGTAGACGTGTTCAGAAACATtctgttcttatttacaattagtcactccaaaatgacacaatacattatttaccattcgtttctattgggcacaacataaccaaaacaaacagcaaatgcatccaacaagtttgtagagtcacaagcttggtGTCGTCATTGCgtactaggaatatgggaccaaatactacgcTTTTGACTCCATTTAATAcactaagtgaatttgtccaaatacttgacACCTTCAAACgaggggactagatacataaagtgcattCATATCTAAaaggtaaaacagatatgtatgaaaataacctcaaataaaaaggtgacattctgtactgtcggctcataaaacatttgatctcaagtccaaaatgctggagtacagagccaaattAAGAGTATTAGCTTCACTATCCAAATAAACACGTAGGGGAGCGTATGTGATTTTTCTAACGTCCCACATTTCAAATCAAGTGCTTTTCACACACTGCATCTTATTGTTTTAACAGTGTTCTTTCGCTTTCTTTGTTGTCCAACAGCAAACTCCCAGACGCAAAGTCAAGGGCACTTGATAATGTCGGCCGGGTGTACGCCAGAATATGAAAGTTCCCACAGGCTATTGATGCGTCGGTGGAAACTCAAAGTATATGGCACATCTGTGTTTTTATGTTTGGGTTGTGTGATGAAGCAAATAGTTTAATACAAAGGACTCCTAATATATGTATCCTATTCACTGTTGTTTGTGTATTTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24254 TTC25; tetratricopeptide repeat protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940956.1 True 2517 mRNA 0.42 3 36734571 36737505

Neighbor

gene id symbol gene type direction distance location
LOC110486251 cn37 coding downstream 2364 36726699 ~ 36732207 (-)
LOC110486250 LOC106607281 coding downstream 11960 36693180 ~ 36722611 (-)
LOC110486249 LOC106607278 coding downstream 41931 36688159 ~ 36692640 (-)
LOC110486248 LOC106607280 coding downstream 49954 36680465 ~ 36684617 (-)
LOC110486245 LOC106607276 coding downstream 63144 36665145 ~ 36671427 (-)
LOC110512845 hsp70b coding upstream 5789 36743294 ~ 36746458 (-)
LOC118938280 hsp70b coding upstream 12720 36750225 ~ 36760370 (-)
LOC118938281 hsp70b coding upstream 19603 36757108 ~ 36760119 (-)
LOC118938277 hsp70b coding upstream 26476 36763981 ~ 36767309 (-)
LOC118938282 hsp70b coding upstream 33370 36770875 ~ 36774178 (-)
G1171101 LOC106607274 non-coding downstream 77474 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 123524 36610764 ~ 36611047 (-)
G1171049 NA non-coding downstream 142122 36592167 ~ 36592449 (-)
G1171042 NA non-coding downstream 156336 36577070 ~ 36578235 (-)
G1171040 NA non-coding downstream 160993 36573041 ~ 36573578 (-)
G1171122 NA non-coding upstream 16724 36754229 ~ 36762017 (-)
G1171132 NA non-coding upstream 93415 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 93751 36831256 ~ 36831589 (-)
G1171068 NA non-coding upstream 118372 36855877 ~ 36856985 (-)
G1171051 NA other downstream 137930 36595832 ~ 36596641 (-)
G1171050 NA other downstream 140045 36594054 ~ 36594526 (-)
G1170998 NA other downstream 241047 36493089 ~ 36493524 (-)
G1170826 NA other downstream 624132 36110102 ~ 36110439 (-)
G1170811 NA other downstream 643154 36090762 ~ 36091417 (-)
G1171057 hsp70b other upstream 7267 36665169 ~ 36828425 (-)
G1171149 NA other upstream 146513 36884018 ~ 36884340 (-)
G1171337 NA other upstream 460723 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2443269 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2510647 39248150 ~ 39250310 (-)

Expression


Co-expression Network